Signal Processing Using Non-invasive Physiological Sensors

Non-invasive biomedical sensors for monitoring physiological parameters from the human body for potential future therapies and healthcare solutions. Today, a critical factor in providing a cost-effective healthcare system is improving patients' quality of life and mobility, which can be achieved by developing non-invasive sensor systems, which can then be deployed in point of care, used at home or integrated into wearable devices for long-term data collection. Another factor that plays an integral part in a cost-effective healthcare system is the signal processing of the data recorded with non-invasive biomedical sensors. In this book, we aimed to attract researchers who are interested in the application of signal processing methods to different biomedical signals, such as an electroencephalogram (EEG), electromyogram (EMG), functional near-infrared spectroscopy (fNIRS), electrocardiogram (ECG), galvanic skin response, pulse oximetry, photoplethysmogram (PPG), etc. We encouraged new signal processing methods or the use of existing signal processing methods for its novel application in physiological signals to help healthcare providers make better decisions

The influence of graphical user interface on motion onset brain-computer interface performance and the effect of data augmentation on motor imagery brain-computer interface

Motor Imagery Brain Computer Interface (MI BCI) is one of the most frequently used BCI modalities, due to the versatility of its applications. However, it still has unresolved issues like time-consuming calibration, low information transfer rate, and inconsistent performance across individuals. Combining MI BCI with Motion Onset Visual Evoked Potential (mVEP) BCI in a hybrid structure may solve some of these problems. Combining MI BCI with more robust mVEP BCI, would increase the degrees of freedom thereby increasing the information transfer rate, and would also indirectly improve intrasubject consistency in performance by replacing some MI-based tasks with mVEP. Unfortunately, due to Covid -19 pandemic experimental research on hybrid BCI was not possible, therefore this thesis focuses on two BCI separately. Chapter 1 provides an overview of different BCIs modalities and the underlying neurophysiological principles, followed by the objectives of the thesis. The research contributions are also highlighted. Finally, the thesis outlines are presented at the end of this chapter. Chapter 2 presents a comprehensive state of the art to the thesis, drawing on a wide range of literature in relevant fields. Specifically, it delves into MI BCI, mVEP BCI, Deep Learning, Transfer Learning (TL), Data Augmentation (DA) and Generative Adversarial Networks (GANs). Chapter 3 investigates the effect of graphical elements, in online and offline experiments. In the offline experiment, graphical elements such as the color, size, position, and layout were explored. Replacing a default red moving bar with a green and blue bar, changing the background color from white to gray, and using smaller visual angles did not lead to statistically significant improvement in accuracy. However, the effect size of η2 (0.085) indicated a moderate effect for these changes of graphical factors. Similarly, no statistically significant difference was found for the two different layouts in online experiments. Overall, the mVEP BCI has achieved a classification accuracy of approximately 80%, and it is relatively impervious to changes in graphical interface parameters. This suggests that mVEP is a promising candidate for a hybrid BCI system combined with MI, that requires dynamic, versatile graphical design features. In Chapter 4, various DA methods are explored, including Segmentation and Recombination in Time Domain, Segmentation and Recombination in Time-Frequency Domain, and Spatial Analogy. These methods are evaluated based on three feature extraction approaches: Common Spatial Patterns, Time Domain Parameters (TDP), and Band Power. The evaluation was conducted using a validated BCI set, namely the BCI Competition IV dataset 2a, as well as a dataset obtained from our research group. The methods are effective when a small dataset of single subject are available. All three DA methods significantly affect the performance of the TDP feature extraction method. Chapter 5 explored the use of GANs for DA in combination with TL and cropped training strategies using ShallowFBCSP classifier. It also used the same validated dataset (BCI competition IV dataset 2a) as in Chapter 4. In contrast to DA method explored in Chapter 4, this DA is suitable for larger datasets and for generalizing training based on other people’s data. Applying GAN-based DA to the dataset resulted on average in a 2% improvement in average accuracy (from 68.2% to 70.7%). This study provides a novel method to enable MI GAN training with only 40 trials per participant with the rest 8 people’s data for TL, addressing the data insufficiency issue for GANs. The evaluation of generated artificial trials revealed the importance of inter-class differences in MI patterns, which can be easily identified by GANs. Overall the thesis addressed the main practical issues of both mVEP and MI BCI paving the way for their successful combination in future experiments

Network Modeling of Motor Pathways from Neural Recordings

During cued motor tasks, for both speech and limb movement, information propagates from primary sensory areas, to association areas, to primary and supplementary motor and language areas. Through the recent advent of high density recordings at multiple scales, it has become possible to simultaneously observe activity occurring from these disparate regions at varying resolution. Models of brain activity generally used in brain-computer interface (BCI) control do not take into account the global differences in recording site function, or the interactions between them. Through the use of connectivity measures, however, it has been made possible to determine the contribution of individual recording sites to the global activity, as they vary with task progression. This dissertation extends those connectivity models to provide summary information about the importance of individual sites. This is achieved through the application of network measures on the adjacency structure determined by connectivity measures. Similarly, by analyzing the coordinated activity of all of the electrode sites simultaneously during task performance, it is possible to elucidate discrete functional units through clustering analysis of the electrode recordings. In this dissertation, I first describe a BCI system using simple motor movement imagination at single recording sites. I then incorporate connectivity through the use of TV-DBN modeling on higher resolution electrode recordings, specifically electrocorticography (ECoG). I show that PageRank centrality reveals information about task progression and regional specificity which was obscured by direct application of the connectivity measures, due to the combinatorial increase in feature dimensionality. I then show that clustering of ECoG recordings using a method to determine the inherent cluster count algorithmically provides insight into how network involvement in task execution evolves, though in a manner dependent on grid coverage. Finally, I extend clustering analysis to show how individual neurons in motor cortex form distinct functional communities. These communities are shown to be task-specific, suggesting that neurons can form functional units with distinct neural populations across multiple recording sites in a context dependent impermanent manner. This work demonstrates that network measures of connectivity models of neurophysiological recordings are a rich source of information relevant to the field of neuroscience, as well as offering the promise of improved degree-of-freedom and naturalness possible through direct BCI control. These models are shown to be useful at multiple recording scales, from cortical-area level ECoG, to highly localized single unit microelectrode recordings

The potential of error-related potentials. Analysis and decoding for control, neuro-rehabilitation and motor substitution

Las interfaces cerebro-máquina (BMIs, por sus siglas en inglés) permiten la decodificación de patrones de activación neuronal del cerebro de los usuarios para proporcionar a personas con movilidad severamente limitada, ya sea debido a un accidente o a una enfermedad neurodegenerativa, una forma de establecer una conexión directa entre su cerebro y un dispositivo. En este sentido, las BMIs basadas en técnicas no invasivas, como el electroencefalograma (EEG) han ofrecido a estos usuarios nuevas oportunidades para recuperar el control sobre las actividades de su vida diaria que de otro modo no podrían realizar, especialmente en las áreas de comunicación y control de su entorno.En los últimos años, la tecnología está avanzando a grandes pasos y con ella la complejidad de dispositivos ha incrementado significativamente, ampliando el número de posibilidades para controlar sofisticados dispositivos robóticos, prótesis con numerosos grados de libertad o incluso para la aplicación de complejos patrones de estimulación eléctrica en las propias extremidades paralizadas de un usuario, que le permitan ejecutar movimientos precisos. Sin embargo, la cantidad de información que se puede transmitir entre el cerebro y estos dispositivos sigue siendo muy limitada, tanto por el número como por la velocidad a la que se pueden decodificar los comandos neuronales. Por lo tanto, depender únicamente de las señales neuronales no garantiza un control óptimo y preciso.Para poder sacar el máximo partido de estas tecnologías, el campo de las BMIs adoptó el conocido enfoque de “control-compartido". Esta estrategia de control pretende crear un sistema de cooperación entre el usuario y un dispositivo inteligente, liberando al usuario de las tareas más pesadas requeridas para ejecutar la tarea sin llegar a perder la sensación de estar en control. De esta manera, los usuarios solo necesitan centrar su atención en los comandos de alto nivel (por ejemplo, elegir un elemento específico que agarrar, o elegir el destino final donde moverse) mientras el agente inteligente resuelve problemas de bajo nivel (como planificación de trayectorias, esquivar obstáculos, etc.) que permitan realizar la tarea designada de la manera óptima.En particular, esta tesis gira en torno a una señal neuronal cognitiva de alto nivel originada como la falta de coincidencia entre las expectativas del usuario y las acciones reales ejecutadas por los dispositivos inteligentes. Estas señales, denominadas potenciales de error (ErrPs), se consideran una forma natural de intercomunicar nuestro cerebro con máquinas y, por lo tanto, los usuarios solo requieren monitorizar las acciones de un dispositivo y evaluar mentalmente si este último se comporta correctamente o no. Esto puede verse como una forma de supervisar el comportamiento del dispositivo, en el que la decodificación de estas evaluaciones mentales se utiliza para proporcionar a estos dispositivos retroalimentación directamente relacionada con la ejecución de una tarea determinada para que puedan aprender y adaptarse a las preferencias del usuario.Dado que la respuesta neuronal de ErrP está asociada a un evento exógeno (dispositivo que comete una acción errónea), la mayoría de los trabajos desarrollados han intentado distinguir si una acción es correcta o errónea mediante la explotación de eventos discretos en escenarios bien controlados. Esta tesis presenta el primer intento de cambiar hacia configuraciones asíncronas que se centran en tareas relacionadas con el aumento de las capacidades motoras, con el objetivo de desarrollar interfaces para usuarios con movilidad limitada. En este tipo de configuraciones, dos desafíos importantes son que los eventos correctos o erróneos no están claramente definidos y los usuarios tienen que evaluar continuamente la tarea ejecutada, mientras que la clasificación de las señales EEG debe realizarse de forma asíncrona. Como resultado, los decodificadores tienen que lidiar constantemente con la actividad EEG de fondo, que típicamente conduce a una gran cantidad de errores de detección de firmas de error. Para superar estos desafíos, esta tesis aborda dos líneas principales de trabajo.Primero, explora la neurofisiología de las señales neuronales evocadas asociadas con la percepción de errores durante el uso interactivo de un BMI en escenarios continuos y más realistas.Se realizaron dos estudios para encontrar características alternativas basadas en el dominio de la frecuencia como una forma de lidiar con la alta variabilidad de las señales del EEG. Resultados, revelaron que existe un patrón estable representado como oscilaciones "theta" que mejoran la generalización durante la clasificación. Además, se utilizaron técnicas de aprendizaje automático de última generación para aplicar el aprendizaje de transferencia para discriminar asincrónicamente los errores cuando se introdujeron de forma gradual y no se conoce presumiblemente el inicio que desencadena los ErrPs. Además, los análisis de neurofisiología arrojan algo de luz sobre los mecanismos cognitivos subyacentes que provocan ErrP durante las tareas continuas, lo que sugiere la existencia de modelos neuronales en nuestro cerebro que acumulan evidencia y solo toman una decisión al alcanzar un cierto umbral. En segundo lugar, esta tesis evalúa la implementación de estos potenciales relacionados con errores en tres aplicaciones orientadas al usuario. Estos estudios no solo exploran cómo maximizar el rendimiento de decodificación de las firmas ErrP, sino que también investigan los mecanismos neuronales subyacentes y cómo los diferentes factores afectan las señales provocadas.La primera aplicación de esta tesis presenta una nueva forma de guiar a un robot móvil que se mueve en un entorno continuo utilizando solo potenciales de error como retroalimentación que podrían usarse para el control directo de dispositivos de asistencia. Con este propósito, proponemos un algoritmo basado en el emparejamiento de políticas para el aprendizaje de refuerzo inverso para inferir el objetivo del usuario a partir de señales cerebrales.La segunda aplicación presentada en esta tesis contempla los primeros pasos hacia un BCI híbrido para ejecutar distintos tipos de agarre de objetos, con el objetivo de ayudar a las personas que han perdido la funcionalidad motora de su extremidad superior. Este BMI combina la decodificación del tipo de agarre a partir de señales de EEG obtenidas del espectro de baja frecuencia con los potenciales de error provocados como resultado de la monitorización de movimientos de agarre erróneos. Los resultados muestran que, en efecto los ErrP aparecen en combinaciones de señales motoras originadas a partir de movimientos de agarre consistentes en una única repetición. Además, la evaluación de los diferentes factores involucrados en el diseño de la interfaz híbrida (como la velocidad de los estímulos, el tipo de agarre o la tarea mental) muestra cómo dichos factores afectan la morfología del subsiguiente potencial de error evocado.La tercera aplicación investiga los correlatos neuronales y los procesos cognitivos subyacentes asociados con desajustes somatosensoriales producidos por perturbaciones inesperadas durante la estimulación eléctrica neuromuscular en el brazo de un usuario. Este estudio simula los posibles errores que ocurren durante la terapia de neuro-rehabilitación, en la que la activación simultánea de la estimulación aferente mientras los sujetos se concentran en la realización de una tarea motora es crucial para una recuperación óptima. Los resultados muestran que los errores pueden aumentar la atención del sujeto en la tarea y desencadenar mecanismos de aprendizaje que al mismo tiempo podrían promover la neuroplasticidad motora.En resumen, a lo largo de esta tesis, se han diseñado varios paradigmas experimentales para mejorar la comprensión de cómo se generan los potenciales relacionados con errores durante el uso interactivo de BMI en aplicaciones orientadas al usuario. Se han propuesto diferentes métodos para pasar de la configuración bloqueada en el tiempo a la asíncrona, tanto en términos de decodificación como de percepción de los eventos erróneos; y ha explorado tres aplicaciones relacionadas con el aumento de las capacidades motoras, en las cuales los ErrPs se pueden usar para el control de dispositivos, la sustitución de motores y la neuro-rehabilitación.Brain-machine interfaces (BMIs) allow the decoding of cortical activation patterns from the users brain to provide people with severely limited mobility, due to an accident or disease, a way to establish a direct connection between their brain and a device. In this sense, BMIs based in noninvasive recordings, such as the electroencephalogram (EEG) have o↵ered these users new opportunities to regain control over activities of their daily life that they could not perform otherwise, especially in the areas of communication and control of their environment. Over the past years and with the latest technological advancements, devices have significantly grown on complexity expanding the number of possibilities to control complex robotic devices, prosthesis with numerous degrees of freedom or even to apply compound patterns of electrical stimulation on the subjects own paralyzed extremities to execute precise movements. However, the band-with of communication between brain and devices is still very limited, both in terms of the number and the speed at which neural commands can be decoded, and thus solely relying on neural signals do not guarantee accurate control them. In order to benefit of these technologies, the field of BMIs adopted the well-known approach of shared-control. This strategy intends to create a cooperation system between the user and an intelligent device, liberating the user from the burdensome parts of the task without losing the feeling of being in control. Here, users only need to focus their attention on high-level commands (e.g. choose the final destination to reach, or a specific item to grab) while the intelligent agent resolve low-level problems (e.g. trajectory planning, obstacle avoidance, etc) to perform the designated task in the optimal way. In particular, this thesis revolves around a high-level cognitive neural signal originated as the mismatch between the expectations of the user and the actual actions executed by the intelligent devices. These signals, denoted as error-related potentials (ErrPs), are thought as a natural way to intercommunicate our brain with machines and thus users only require to monitor the actions of a device and mentally assess whether the latter is behaving correctly or not. This can be seen as a way to supervise the device’s behavior, in which the decoding of these mental assessments is used to provide these devices with feedback directly related with the performance of a given task so they can learn and adapt to the user’s preferences. Since the ErrP’s neural response is associated to an exogenous event (device committing an erroneous action), most of the developed works have attempted to distinguish whether an action is correct or erroneous by exploiting discrete events under well-controlled scenarios. This thesis presents the first attempt to shift towards asynchronous settings that focus on tasks related with the augmentation of motor capabilities, with the objective of developing interfaces for users with limited mobility. In this type of setups, two important challenges are that correct or erroneous events are not clearly defined and users have to continuously evaluate the executed task, while classification of EEG signals has to be performed asynchronously. As a result, the decoders have to constantly deal with background EEG activity, which typically leads to a large number of missdetection of error signatures. To overcome these challenges, this thesis addresses two main lines of work. First, it explores the neurophysiology of the evoked neural signatures associated with the perception of errors during the interactive use of a BMI in continuous and more realistic scenarios. Two studies were performed to find alternative features based on the frequency domain as a way of dealing with the high variability of EEG signals. Results, revealed that there exists a stable pattern represented as theta oscillations that enhance generalization during classification. Also, state-of-the-art machine learning techniques were used to apply transfer learning to asynchronously discriminate errors when they were introduced in a gradual fashion and the onset that triggers the ErrPs is not presumably known. Furthermore, neurophsysiology analyses shed some light about the underlying cognitive mechanisms that elicit ErrP during continuous tasks, suggesting the existence of neural models in our brain that accumulate evidence and only take a decision upon reaching a certain threshold. Secondly, this thesis evaluates the implementation of these error-related potentials in three user-oriented applications. These studies not only explore how to maximize the decoding performance of ErrP signatures but also investigate the underlying neural mechanisms and how di↵erent factors a↵ect the elicited signals. The first application of this thesis presents a new way to guide a mobile robot moving in a continuous environment using only error potentials as feedback which could be used for the direct control of assistive devices. With this purpose, we propose an algorithm based on policy matching for inverse reinforcement learning to infer the user goal from brain signals. The second application presented in this thesis contemplates the first steps towards a hybrid BMI for grasping oriented to assist people who have lost motor functionality of their upper-limb. This BMI combines the decoding of the type of grasp from low-frequency EEG signals with error-related potentials elicited as the result of monitoring an erroneous grasping. The results show that ErrPs are elicited in combination of motor signatures from the low-frequency spectrum originated from single repetition grasping tasks and evaluates how di↵erent design factors (such as the speed of the stimuli, type of grasp or mental task) impact the morphology of the subsequent evoked ErrP. The third application investigates the neural correlates and the underlying cognitive processes associated with somatosensory mismatches produced by unexpected disturbances during neuromsucular electrical stimulation on a user’s arm. This study simulates possible errors that occur during neurorehabilitation therapy, in which the simultaneous activation of a↵erent stimulation while the subjects are concentrated in performing a motor task is crucial for optimal recovery. The results showed that errors may increase subject’s attention on the task and trigger learning mechanisms that at the same time could promote motor neuroplasticity. In summary, throughout this thesis, several experimental paradigms have been designed to improve the understanding of how error-related potentials are generated during the interactive use of BMIs in user-oriented applications. Di↵erent methods have been proposed to shift from time-locked to asynchronous settings, both in terms of decoding and perception of the erroneous events; and it has explored three applications related with the augmentation of motor capabilities, in which ErrPs can be used for control of devices, motor substitution and neurorehabilitation.<br /

Pattern Recognition

A wealth of advanced pattern recognition algorithms are emerging from the interdiscipline between technologies of effective visual features and the human-brain cognition process. Effective visual features are made possible through the rapid developments in appropriate sensor equipments, novel filter designs, and viable information processing architectures. While the understanding of human-brain cognition process broadens the way in which the computer can perform pattern recognition tasks. The present book is intended to collect representative researches around the globe focusing on low-level vision, filter design, features and image descriptors, data mining and analysis, and biologically inspired algorithms. The 27 chapters coved in this book disclose recent advances and new ideas in promoting the techniques, technology and applications of pattern recognition

Intelligent Biosignal Processing in Wearable and Implantable Sensors

This reprint provides a collection of papers illustrating the state-of-the-art of smart processing of data coming from wearable, implantable or portable sensors. Each paper presents the design, databases used, methodological background, obtained results, and their interpretation for biomedical applications. Revealing examples are brain–machine interfaces for medical rehabilitation, the evaluation of sympathetic nerve activity, a novel automated diagnostic tool based on ECG data to diagnose COVID-19, machine learning-based hypertension risk assessment by means of photoplethysmography and electrocardiography signals, Parkinsonian gait assessment using machine learning tools, thorough analysis of compressive sensing of ECG signals, development of a nanotechnology application for decoding vagus-nerve activity, detection of liver dysfunction using a wearable electronic nose system, prosthetic hand control using surface electromyography, epileptic seizure detection using a CNN, and premature ventricular contraction detection using deep metric learning. Thus, this reprint presents significant clinical applications as well as valuable new research issues, providing current illustrations of this new field of research by addressing the promises, challenges, and hurdles associated with the synergy of biosignal processing and AI through 16 different pertinent studies. Covering a wide range of research and application areas, this book is an excellent resource for researchers, physicians, academics, and PhD or master students working on (bio)signal and image processing, AI, biomaterials, biomechanics, and biotechnology with applications in medicine

Computing with Simulated and Cultured Neuronal Networks

Ph.DDOCTOR OF PHILOSOPH