44,618 research outputs found
Counterpart semantics for a second-order mu-calculus
We propose a novel approach to the semantics of quantified μ-calculi, considering models where states are algebras; the evolution relation is given by a counterpart relation (a family of partial homomorphisms), allowing for the creation, deletion, and merging of components; and formulas are interpreted over sets of state assignments (families of substitutions, associating formula variables to state components). Our proposal avoids the limitations of existing approaches, usually enforcing restrictions of the evolution relation: the resulting semantics is a streamlined and intuitively appealing one, yet it is general enough to cover most of the alternative proposals we are aware of
Towards a Maude tool for model checking temporal graph properties
We present our prototypical tool for the verification of graph transformation systems. The major novelty of our tool is that it provides a model checker for temporal graph properties based on counterpart semantics for quantified m-calculi. Our tool can be considered as an instantiation of our approach to counterpart semantics which allows for a neat handling of creation, deletion and merging in systems
with dynamic structure. Our implementation is based on the object-based machinery of Maude, which provides the basics to deal with attributed graphs. Graph transformation
systems are specified with term rewrite rules. The model checker evaluates logical formulae of second-order modal m-calculus in the automatically generated CounterpartModel (a sort of unfolded graph transition system) of the graph transformation system under study. The result of evaluating a formula is a set of assignments for each state, associating node variables to actual nodes
Runtime verification for biochemical programs
The biochemical paradigm is well-suited for modelling autonomous systems and new programming languages are emerging from this approach. However, in order to validate such programs, we need to define precisely their semantics and to provide verification techniques. In this paper, we consider a higher-order biochemical calculus that models the structure of system states and its dynamics thanks to rewriting abstractions, namely rules and strategies. We extend this calculus with a runtime verification technique in order to perform automatic discovery of property satisfaction failure. The property specification language is a subclass of LTL safety and liveness properties
A dataflow platform for applications based on Linked Data
Modern software applications increasingly benefit from accessing the multifarious and heterogeneous Web of Data, thanks to the use of web APIs and Linked Data principles. In previous work, the authors proposed a platform to develop applications consuming Linked Data in a declarative and modular way. This paper describes in detail the functional language the platform gives access to, which is based on SPARQL (the standard query language for Linked Data) and on the dataflow paradigm. The language features interactive and meta-programming capabilities so that complex modules/applications can be developed. By adopting a declarative style, it favours the development of modules that can be reused in various specific execution context
Petri nets for systems and synthetic biology
We give a description of a Petri net-based framework for
modelling and analysing biochemical pathways, which uni¯es the qualita-
tive, stochastic and continuous paradigms. Each perspective adds its con-
tribution to the understanding of the system, thus the three approaches
do not compete, but complement each other. We illustrate our approach
by applying it to an extended model of the three stage cascade, which
forms the core of the ERK signal transduction pathway. Consequently
our focus is on transient behaviour analysis. We demonstrate how quali-
tative descriptions are abstractions over stochastic or continuous descrip-
tions, and show that the stochastic and continuous models approximate
each other. Although our framework is based on Petri nets, it can be
applied more widely to other formalisms which are used to model and
analyse biochemical networks
The Complexity of Synthesizing Uniform Strategies
We investigate uniformity properties of strategies. These properties involve
sets of plays in order to express useful constraints on strategies that are not
\mu-calculus definable. Typically, we can state that a strategy is
observation-based. We propose a formal language to specify uniformity
properties, interpreted over two-player turn-based arenas equipped with a
binary relation between plays. This way, we capture e.g. games with winning
conditions expressible in epistemic temporal logic, whose underlying
equivalence relation between plays reflects the observational capabilities of
agents (for example, synchronous perfect recall). Our framework naturally
generalizes many other situations from the literature. We establish that the
problem of synthesizing strategies under uniformity constraints based on
regular binary relations between plays is non-elementary complete.Comment: In Proceedings SR 2013, arXiv:1303.007
Model Checking Spatial Logics for Closure Spaces
Spatial aspects of computation are becoming increasingly relevant in Computer
Science, especially in the field of collective adaptive systems and when
dealing with systems distributed in physical space. Traditional formal
verification techniques are well suited to analyse the temporal evolution of
programs; however, properties of space are typically not taken into account
explicitly. We present a topology-based approach to formal verification of
spatial properties depending upon physical space. We define an appropriate
logic, stemming from the tradition of topological interpretations of modal
logics, dating back to earlier logicians such as Tarski, where modalities
describe neighbourhood. We lift the topological definitions to the more general
setting of closure spaces, also encompassing discrete, graph-based structures.
We extend the framework with a spatial surrounded operator, a propagation
operator and with some collective operators. The latter are interpreted over
arbitrary sets of points instead of individual points in space. We define
efficient model checking procedures, both for the individual and the collective
spatial fragments of the logic and provide a proof-of-concept tool
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