Global Grids and Software Toolkits: A Study of Four Grid Middleware Technologies

Grid is an infrastructure that involves the integrated and collaborative use of computers, networks, databases and scientific instruments owned and managed by multiple organizations. Grid applications often involve large amounts of data and/or computing resources that require secure resource sharing across organizational boundaries. This makes Grid application management and deployment a complex undertaking. Grid middlewares provide users with seamless computing ability and uniform access to resources in the heterogeneous Grid environment. Several software toolkits and systems have been developed, most of which are results of academic research projects, all over the world. This chapter will focus on four of these middlewares--UNICORE, Globus, Legion and Gridbus. It also presents our implementation of a resource broker for UNICORE as this functionality was not supported in it. A comparison of these systems on the basis of the architecture, implementation model and several other features is included.Comment: 19 pages, 10 figure

Tree-Based Overlay Networks for Scalable Applications

The increasing availability of high-performance computing systems with thousands, tens of thousands, and even hundreds of thousands of computational nodes is driving the demand for programming models and infrastructures that allow effective use of such large-scale environments. Tree-based Overlay Networks (TBŌNs) have proven to provide such a model for distributed tools like performance profilers, parallel debuggers, system monitors and system administration tools. We demonstrate that the extensibility and flexibility of the TBŌN distributed computing model, along with its performance characteristics, make it surprisingly general, particularly for applications outside the tool domain. We describe many interesting applications and commonly-used algorithms for which TBŌNs are well-suited and provide a new (non-tool) case study, a distributed implementation of the mean-shift algorithm commonly used in computer vision to delineate arbitrarily shaped clusters in complex, multi-modal feature spaces. 1

Network-aware heuristics for inter-domain meta-scheduling in Grids

AbstractGrid computing generally involves the aggregation of geographically distributed resources in the context of a particular application. As such resources can exist within different administrative domains, requirements on the communication network must also be taken into account when performing meta-scheduling, migration or monitoring of jobs. Similarly, coordinating efficient interaction between different domains should also be considered when performing such meta-scheduling of jobs. A strategy to perform peer-to-peer-inspired meta-scheduling in Grids is presented. This strategy has three main goals: (1) it takes the network characteristics into account when performing meta-scheduling; (2) communication and query referral between domains is considered, so that efficient meta-scheduling can be performed; and (3) the strategy demonstrates scalability, making it suitable for many scientific applications that require resources on a large scale. Simulation results are presented that demonstrate the usefulness of this approach, and it is compared with other proposals from literature

Data Mining Applications in Banking Sector While Preserving Customer Privacy

In real-life data mining applications, organizations cooperate by using each other’s data on the same data mining task for more accurate results, although they may have different security and privacy concerns. Privacy-preserving data mining (PPDM) practices involve rules and techniques that allow parties to collaborate on data mining applications while keeping their data private. The objective of this paper is to present a number of PPDM protocols and show how PPDM can be used in data mining applications in the banking sector. For this purpose, the paper discusses homomorphic cryptosystems and secure multiparty computing. Supported by experimental analysis, the paper demonstrates that data mining tasks such as clustering and Bayesian networks (association rules) that are commonly used in the banking sector can be efficiently and securely performed. This is the first study that combines PPDM protocols with applications for banking data mining. Doi: 10.28991/ESJ-2022-06-06-014 Full Text: PD

GekkoFS: A temporary burst buffer file system for HPC applications

Many scientific fields increasingly use high-performance computing (HPC) to process and analyze massive amounts of experimental data while storage systems in today’s HPC environments have to cope with new access patterns. These patterns include many metadata operations, small I/O requests, or randomized file I/O, while general-purpose parallel file systems have been optimized for sequential shared access to large files. Burst buffer file systems create a separate file system that applications can use to store temporary data. They aggregate node-local storage available within the compute nodes or use dedicated SSD clusters and offer a peak bandwidth higher than that of the backend parallel file system without interfering with it. However, burst buffer file systems typically offer many features that a scientific application, running in isolation for a limited amount of time, does not require. We present GekkoFS, a temporary, highly-scalable file system which has been specifically optimized for the aforementioned use cases. GekkoFS provides relaxed POSIX semantics which only offers features which are actually required by most (not all) applications. GekkoFS is, therefore, able to provide scalable I/O performance and reaches millions of metadata operations already for a small number of nodes, significantly outperforming the capabilities of common parallel file systems.Peer ReviewedPostprint (author's final draft

Efficient layering for high speed communication: the MPI over Fast Messages (FM) experience

We describe our experience of designing, implementing, and evaluating two generations of high performance communication libraries, Fast Messages (FM) for Myrinet. In FM 1, we designed a simple interface and provided guarantees of reliable and in-order delivery, and flow control. While this was a significant improvement over previous systems, it was not enough. Layering MPI atop FM 1 showed that only about 35 % of the FM 1 bandwidth could be delivered to higher level communication APIs. Our second generation communication layer, FM 2, addresses the identified problems, providing gather-scatter, interlayer scheduling, receiver flow control, as well as some convenient API features which simplify programming. FM 2 can deliver 55–95 % to higher level APIs such as MPI. This is especially impressive as the absolute bandwidths delivered have increased over fourfold to 90 MB/s. We describe general issues encountered in matching two communication layers, and our solutions as embodied in FM 2

A Taxonomy of Workflow Management Systems for Grid Computing

With the advent of Grid and application technologies, scientists and engineers are building more and more complex applications to manage and process large data sets, and execute scientific experiments on distributed resources. Such application scenarios require means for composing and executing complex workflows. Therefore, many efforts have been made towards the development of workflow management systems for Grid computing. In this paper, we propose a taxonomy that characterizes and classifies various approaches for building and executing workflows on Grids. We also survey several representative Grid workflow systems developed by various projects world-wide to demonstrate the comprehensiveness of the taxonomy. The taxonomy not only highlights the design and engineering similarities and differences of state-of-the-art in Grid workflow systems, but also identifies the areas that need further research.Comment: 29 pages, 15 figure

Adaptive sampling-based profiling techniques for optimizing the distributed JVM runtime

Extending the standard Java virtual machine (JVM) for cluster-awareness is a transparent approach to scaling out multithreaded Java applications. While this clustering solution is gaining momentum in recent years, efficient runtime support for fine-grained object sharing over the distributed JVM remains a challenge. The system efficiency is strongly connected to the global object sharing profile that determines the overall communication cost. Once the sharing or correlation between threads is known, access locality can be optimized by collocating highly correlated threads via dynamic thread migrations. Although correlation tracking techniques have been studied in some page-based sof Tware DSM systems, they would entail prohibitively high overheads and low accuracy when ported to fine-grained object-based systems. In this paper, we propose a lightweight sampling-based profiling technique for tracking inter-thread sharing. To preserve locality across migrations, we also propose a stack sampling mechanism for profiling the set of objects which are tightly coupled with a migrant thread. Sampling rates in both techniques can vary adaptively to strike a balance between preciseness and overhead. Such adaptive techniques are particularly useful for applications whose sharing patterns could change dynamically. The profiling results can be exploited for effective thread-to-core placement and dynamic load balancing in a distributed object sharing environment. We present the design and preliminary performance result of our distributed JVM with the profiling implemented. Experimental results show that the profiling is able to obtain over 95% accurate global sharing profiles at a cost of only a few percents of execution time increase for fine- to medium- grained applications. © 2010 IEEE.published_or_final_versionThe 24th IEEE International Symposium on Parallel & Distributed Processing (IPDPS 2010), Atlanta, GA., 19-23 April 2010. In Proceedings of the 24th IPDPS, 2010, p. 1-1