Genetic analysis of a parasite contact zone in the southwestern United States

Studies of cophylogeny (the mirroring of the evolutionary histories of two independent species) lies at the interface of ecology and evolution and therefore is inherently interesting to biologists. The actual mechanisms that lead to patterns cophylogeny are poorly understood. Chewing lice (Trichodectidae) and pocket gophers (Geomyidae) are a model system for the study of cophylogeny. The question to be addressed in this study centers around the fine-scale interactions between pocket gophers and chewing lice in the Southwest United States and whether different louse species actually hybridize within a zone of potential contact. DNA microsatellite techniques, DNA sequencing, PCR, and gel electrophoresis were used to test this question. Based on the results of extensive testing, the evidence indicated hybridization between the two louse species examined. Furthermore, this hybridization was detected on a single host. These conclusions provide valuable insight for future endeavors and furthering the understanding of cophylogeny

Phylogenetic Codivergence Supports Coevolution of Mimetic Heliconius Butterflies

The unpalatable and warning-patterned butterflies _Heliconius erato_ and _Heliconius melpomene_ provide the best studied example of mutualistic Müllerian mimicry, thought – but rarely demonstrated – to promote coevolution. Some of the strongest available evidence for coevolution comes from phylogenetic codivergence, the parallel divergence of ecologically associated lineages. Early evolutionary reconstructions suggested codivergence between mimetic populations of _H. erato_ and _H. melpomene_, and this was initially hailed as the most striking known case of coevolution. However, subsequent molecular phylogenetic analyses found discrepancies in phylogenetic branching patterns and timing (topological and temporal incongruence) that argued against codivergence. We present the first explicit cophylogenetic test of codivergence between mimetic populations of _H. erato_ and _H. melpomene_, and re-examine the timing of these radiations. We find statistically significant topological congruence between multilocus coalescent population phylogenies of _H. erato_ and _H. melpomene_, supporting repeated codivergence of mimetic populations. Divergence time estimates, based on a Bayesian coalescent model, suggest that the evolutionary radiations of _H. erato_ and _H. melpomene_ occurred over the same time period, and are compatible with a series of temporally congruent codivergence events. This evidence supports a history of reciprocal coevolution between Müllerian co-mimics characterised by phylogenetic codivergence and parallel phenotypic change

Jane: A New Tool for the Cophylogeny Reconstruction Problem

Background This paper describes the theory and implementation of a new software tool, called Jane, for the study of historical associations. This problem arises in parasitology (associations of hosts and parasites), molecular systematics (associations of orderings and genes), and biogeography (associations of regions and orderings). The underlying problem is that of reconciling pairs of trees subject to biologically plausible events and costs associated with these events. Existing software tools for this problem have strengths and limitations, and the new Jane tool described here provides functionality that complements existing tools. Results The Jane software tool uses a polynomial time dynamic programming algorithm in conjunction with a genetic algorithm to find very good, and often optimal, solutions even for relatively large pairs of trees. The tool allows the user to provide rich timing information on both the host and parasite trees. In addition the user can limit host switch distance and specify multiple host switch costs by specifying regions in the host tree and costs for host switches between pairs of regions. Jane also provides a graphical user interface that allows the user to interactively experiment with modifications to the solutions found by the program. Conclusions Jane is shown to be a useful tool for cophylogenetic reconstruction. Its functionality complements existing tools and it is therefore likely to be of use to researchers in the areas of parasitology, molecular systematics, and biogeography

Host-parasite cophylogeny and rates of evolution in two rodent-louse assemblages

Studies of cophylogeny greatly increase understanding of associations between hosts and their parasites. This study uses molecular data to test the hypothesis that members of two rodent families (Geomyidae and Heteromyidae) and their associated lice (Geomydoecus and Fahrenholzia, respectively) show a statistically significant pattern of cophylogeny. Both host groups are generally solitary organisms and both louse groups are obligate ectoparasites, often exhibiting extreme degrees of host specificity. This intimate and potentially long-term association likely has resulted in coevolutionary adaptations and counter adaptations on the part of both symbiotic partners. Phylogenetic analysis of chewing lice (Geomydoecus) reveals two major clades corresponding to the G. coronadoi and G. mexicanus species complexes. These louse complexes are reciprocally monophyletic, and each clade within each complex parasitizes a different species of pocket gopher. Both louse species complexes exhibit a significant pattern of cophylogeny when compared to their hosts. The mitochondrial COI gene of lice of the G. coronadoi complex is evolving approximately 2 -3 times faster than the COI gene of their hosts, whereas the COI gene of lice of the G. mexicanus complex is evolving at roughly the same rate as the same gene of their hosts. Future analyses are necessary to determine why evolutionary rates in these two parasite lineages differ. The phylogenetic analysis of sucking lice (Fahrenholzia) resolves relationships among 11 of the 12 currently recognized species and identifies several possible cryptic species. Although there is conflict among the basal nodes of the host and parasite phylogenies, cophylogenetic analysis reveals significant topological congruence between these lice and their heteromyid hosts. The mitochondrial COI gene of Fahrenholzia lice is evolving roughly 1.6 times faster than the COI gene of their hosts, but additional comparisons of molecular rates are necessary to determine if this rate difference is shared by other groups of sucking lice and their hosts. Results of this study indicate that a combination of tree-based, distance-based, and data-based methods should be used in cophylogeny analyses. The final chapter of this dissertation presents a compilation of mammal-louse associations reveals and offers a preliminary assessment of sucking louse prevalence and abundance on heteromyid rodents

Do the Historical Biogeography and Evolutionary History of the Digenean Margotrema spp. across Central Mexico Mirror Those of Their Freshwater Fish Hosts (Goodeinae)?

Host-parasite systems provide an ideal platform to study evolution at different levels, including codivergence in a historical biogeography context. In this study we aim to describe biogeographic and codivergent patterns and associated processes of the Goodeinae freshwater fish and their digenean parasite (Margotrema spp.) over the last 6.5 Ma (million years), identifying the main factors (host and/or hydrogeomorphology) that influenced the evolution of Margotrema. We obtained a species tree for Margotrema spp. using DNA sequence data from mitochondrial and nuclear molecular markers (COI and ITS1, respectively) and performed molecular dating to discern divergence events within the genus. The dispersal-extinction-cladogenesis (DEC) model was used to describe the historical biogeography of digeneans and applied to cophylogenetic analyses of Margotrema and their goodeine hosts. Our results showed that the evolutionary history of Margotrema has been shaped in close association with its geographic context, especially with the geological history of central Mexico during the Pleistocene. Host-specificity has been established at three levels of historical association: a) Species-Species, represented by Xenotaenia resolanae -M. resolanae exclusively found in the Cuzalapa River Basin; b) Species-Lineage, represented by Characodon audax-M. bravoae Lineage II, exclusive to the Upper and Middle Mezquital River Basin, and c) Tribe-Lineage, including two instances of historical associations among parasites and hosts at the taxonomical level of tribe, one represented by Ilyodontini-M. bravoae Lineage I (distributed across the Ayuquila and Balsas River Basins), and another comprised of Girardinichthyini/Chapalichthyini-M. bravoae Lineage III, found only in the Lerma River Basin. We show that the evolutionary history of the parasites is, on several occasions, in agreement with the phylogenetic and biogeographic history of their hosts. A series of biogeographic and host-parasite events explain the codivergence patterns observed, in which cospeciation and colonisation via host-switching and vicariant plus dispersal events are appreciated, at different times during the diversification history of both associates, particularly during the Pleistocene.Facultad de Ciencias Naturales y Muse

Cophylogeny and Biogeography of the Fungal Parasite Cyttaria and Its Host Nothofagus, Southern Beech

The obligate, biotrophic association among species of the fungal genus Cyttaria and their hosts in the plant genus Nothofagus often is cited as a classic example of cophylogeny and is one of the few cases in which the biogeography of a fungus is commonly mentioned or included in biogeographic analyses. In this study molecular and morphological data are used to examine hypotheses regarding the cophylogeny and biogeography of the 12 species of Cyttaria and their hosts, the 11 species of Nothofagus subgenera Lophozonia and Nothofagus. Our results indicate highly significant overall cophylogenetic structure, despite the fact that the associations between species of Cyttaria and Nothofagus usually do not correspond in a simple one to one relationship. Two major lineages of Cyttaria are confined to a single Nothofagus subgenus, a specificity that might account for a minimum of two codivergences. We hypothesize other major codivergences. Numerous extinction also are assumed, as are an independent parasite divergence followed by host switching to account for C. berteroi. Considering the historical association of Cyttaria and Nothofagus, our hypothesis may support the vicariance hypothesis for the trans-Antarctic distribution between Australasian and South American species of Cyttaria species hosted by subgenus Lophozonia. It also supports the hypothesis of transoceanic long distance dispersal to account for the relatively recent relationship between Australian and New Zealand Cyttaria species, which we estimate to have occurred 44.6–28.5 mya. Thus the history of these organisms is not only a reflection of the breakup of Gondwana but also of other events that have contributed to the distributions of many other southern hemisphere plants and fungi.Organismic and Evolutionary BiologyOther Research Uni

Monogeneans of West African Cichlid Fish: Evolution and Cophylogenetic Interactions

The goals of this paper were to investigate phylogenetic and evolutionary patterns of cichlid fish from West Africa and their Cichlidogyrus and Scutogyrus monogenean parasites, to uncover the presence of host-parasite cospeciation and to assess the level of morphological adaptation in parasites. This required the following steps, each one representing specific objectives of this paper: (1) to build phylogenetic trees for Cichlidogyrus and Scutogyrus species based on ribosomal DNA sequences, (2) to investigate phylogenetic relationships within West African cichlid fish based on the analysis of mitochondrial cytochrome b DNA sequences, (3) to investigate host-parasite cophylogenetic history to gain clues on parasite speciation process, and (4) to investigate the link between the morphology of the attachment apparatus and parasite phylogeny. Phylogenetic analyses supported the monophyletic origin of the Cichlidogyrus/Scutogyrus group, and suggested that Cichlidogyrus is polyphyletic and that Scutogyrus is monophyletic. The phylogeny of Cichlidae supported the separation of mouthbrooders and substrate-brooders and is consistent with the hypothesis that the mouthbrooding behavior of Oreochromis and Sarotherodon evolved from substrate-brooding behavior. The mapping of morphological characters of the haptor onto the parasite phylogenetic tree suggests that the attachment organ has evolved from a very simple form to a more complex one. The cophylogenetic analyses indicated a significant fit between trees using distance-based tests, but no significant cospeciation signal using tree-based tests, suggesting the presence of parasite duplications and host switches on related host species. This shed some light on the diversification process of Cichlidogyrus species parasitizing West African cichlids