An Empirical Study of CLIP for Text-based Person Search

Text-based Person Search (TBPS) aims to retrieve the person images using natural language descriptions. Recently, Contrastive Language Image Pretraining (CLIP), a universal large cross-modal vision-language pre-training model, has remarkably performed over various cross-modal downstream tasks due to its powerful cross-modal semantic learning capacity. TPBS, as a fine-grained cross-modal retrieval task, is also facing the rise of research on the CLIP-based TBPS. In order to explore the potential of the visual-language pre-training model for downstream TBPS tasks, this paper makes the first attempt to conduct a comprehensive empirical study of CLIP for TBPS and thus contribute a straightforward, incremental, yet strong TBPS-CLIP baseline to the TBPS community. We revisit critical design considerations under CLIP, including data augmentation and loss function. The model, with the aforementioned designs and practical training tricks, can attain satisfactory performance without any sophisticated modules. Also, we conduct the probing experiments of TBPS-CLIP in model generalization and model compression, demonstrating the effectiveness of TBPS-CLIP from various aspects. This work is expected to provide empirical insights and highlight future CLIP-based TBPS research.Comment: 13 pages, 5 fiugres and 17 tables. Code is available at https://github.com/Flame-Chasers/TBPS-CLI

Screening and characterization of a novel linear B-cell epitope on orf virus F1L protein

BackgroundOrf, also known as contagious ecthyma (CE), is an acute, contagious zoonotic disease caused by the orf virus (ORFV). The F1L protein is a major immunodominant protein on the surface of ORFV and can induce the production of neutralizing antibodies.MethodsThe prokaryotic expression system was used to produce the recombinant F1L protein of ORFV, which was subsequently purified and used to immunize mice. Positive hybridoma clones were screened using an indirect enzyme-linked immunosorbent assay (ELISA). The reactivity and specificity of the monoclonal antibody (mAb) were verified through Western blot and indirect immunofluorescence (IFA). The linear antigenic epitope specific to the mAb was identified through Western blot, using truncated F1L proteins expressed in eukaryotic cells. A multiple sequence alignment of the ORFV reference strains was performed to evaluate the degree of conservation of the identified epitope.ResultsAfter three rounds of subcloning, a mAb named Ba-F1L was produced. Ba-F1L was found to react with both the exogenously expressed F1L protein and the native F1L protein from ORFV-infected cells, as confirmed by Western blot and IFA. The mAb recognized the core epitope 103CKSTCPKEM111, which is highly conserved among various ORFV strains, as shown by homologous sequence alignment.ConclusionThe mAb produced in the present study can be used as a diagnostic reagent for detecting ORFV and as a basic tool for exploring the mechanisms of orf pathogenesis. In addition, the identified linear epitope may be valuable for the development of epitope-based vaccines

Enumeration of spin-space groups: Towards a complete description of symmetries of magnetic orders

Symmetries of three-dimensional periodic scalar fields are described by 230 space groups (SGs). Symmetries of three-dimensional periodic (pseudo-) vector fields, however, are described by the spin-space groups (SSGs), which were initially used to describe the symmetries of magnetic orders. In SSGs, the real-space and spin degrees of freedom are unlocked in the sense that an operation could have different spacial and spin rotations. SSGs gives a complete symmetry description of magnetic structures, and have natural applications in the band theory of itinerary electrons in magnetically ordered systems with weak spin-orbit coupling.\textit{Altermagnetism}, a concept raised recently that belongs to the symmetry-compensated collinear magnetic orders but has non-relativistic spin splitting, is well described by SSGs. Due to the vast number and complicated group structures, SSGs have not yet been systematically enumerated. In this work, we exhaust SSGs based on the invariant subgroups of SGs, with spin operations constructed from three-dimensional (3D) real representations of the quotient groups for the invariant subgroups. For collinear and coplanar magnetic orders, the spin operations can be reduced into lower dimensional real representations. As the number of SSGs is infinite, we only consider SSGs that describe magnetic unit cells up to 12 times crystal unit cells. We obtain 157,289 non-coplanar, 24,788 coplanar-non-collinear, and 1,421 collinear SSGs. The enumerated SSGs are stored in an online database at \url{https://cmpdc.iphy.ac.cn/ssg} with a user-friendly interface. We also develop an algorithm to identify SSG for realistic materials and find SSGs for 1,626 magnetic materials. Our results serve as a solid starting point for further studies of symmetry and topology in magnetically ordered materials

Molecular detection and phylogenetic analysis of Orf viruses from goats in Jiangxi province, China

Orf is a zoonosis caused by the Orf virus (ORFV), which is endemic in goats, sheep, and wild ruminants worldwide. Orf infection is prevalent in China, with outbreaks reported in several provinces. Currently, there is limited information available regarding the characterization of ORFV strains in Jiangxi province. This study investigated an acute outbreak of Orf that occurred in 2021 in a goat herd in the Jiangxi province of China. Clinical signs in this case included lesions on the lips, nose, and inside the mouth. The presence of ORFV was confirmed from tissue samples by polymerase chain reaction (PCR). The nucleotide sequences of the B2L and F1L genes were fully sequenced and used to construct phylogenetic trees. The results of this investigation identified the ORFV JXxy2021 as the cause of the outbreak. The phylogenetic analysis revealed that the ORFV strain JXxy2021 had the highest similarity to the ORFV strains GO and FJ-SL from the neighboring province of Fujian. This suggests that JXxy2021 was likely transmitted from Fujian province. The results have provided valuable information on the genetic characteristics of JXxy2021 and the endemic situations of Orf in China

Exploring the Antibacterial Potential and Underlying Mechanisms of Prunella vulgaris L on Methicillin-Resistant Staphylococcus aureus

Prunella vulgaris L. (PV) is a widely distributed plant species, known for its versatile applications in both traditional and contemporary medicine, as well as in functional food development. Despite its broad-spectrum antimicrobial utility, the specific mechanism of antibacterial action remains elusive. To fill this knowledge gap, the present study investigated the antibacterial properties of PV extracts against methicillin-resistant Staphylococcus aureus (MRSA) and assessed their mechanistic impact on bacterial cells and cellular functions. The aqueous extract of PV demonstrated greater anti-MRSA activity compared to the ethanolic and methanolic extracts. UPLC-ESI-MS/MS tentatively identified 28 phytochemical components in the aqueous extract of PV. Exposure to an aqueous extract at ½ MIC and MIC for 5 h resulted in a significant release of intracellular nucleic acid (up to 6-fold) and protein (up to 10-fold) into the extracellular environment. Additionally, this treatment caused a notable decline in the activity of several crucial enzymes, including a 41.51% reduction in alkaline phosphatase (AKP), a 45.71% decrease in adenosine triphosphatase (ATPase), and a 48.99% drop in superoxide dismutase (SOD). Furthermore, there was a decrease of 24.17% at ½ MIC and 27.17% at MIC in tricarboxylic acid (TCA) cycle activity and energy transfer. Collectively, these findings indicate that the anti-MRSA properties of PV may stem from its ability to disrupt membrane and cell wall integrity, interfere with enzymatic activity, and impede bacterial cell metabolism and the transmission of information and energy that is essential for bacterial growth, ultimately resulting in bacterial apoptosis. The diverse range of characteristics exhibited by PV positions it as a promising antimicrobial agent with broad applications for enhancing health and improving food safety and quality

Growth mechanism of dendritic hematite via hydrolysis of ferricyanide

W.Z. thanks EPSRC for financial support to purchase the FEG SEM (EP/F019580/1).The detailed process of the hydrolysis of ferricyanide into dendritic α-Fe2O3 (hematite) crystals with snowflake-like, feather-like and leaf-like morphologies has been investigated. [Fe(CN)6]3– anions were found to polymerize into large, disordered soft matter aggregates at an early stage. The nucleation of hematite crystals took place near the surface of these aggregates via further hydrolysis. After the crystals grew to a certain size, branches started to appear. When the concentration of ferricyanide was low (i.e. 2 mM to 3.8 mM), growth was preferentially along the six equivalent directions, resulting in a flat snowflake-like shape, while high concentrations (i.e. 9 mM to 500 mM) of ferricyanide led to the growth of selective directions along the zone axes, forming a feather-like or leaf-like morphology. Highly selective adsorption and surface hydrolysis of [Fe(CN)6]3– anions on α-Fe2O3 crystals was found to be a crucial process in the formation of these novel morphologies. It was found that the polymeri- sation of ferricyanide led to a reduction of pH value and that the formation of Fe2O3 increased pH value. The pH value of the solution at the point when the branches start to grow can significantly affect the distribution of Lewis acidic sites on different surfaces and, therefore, change the growth direction. The newly established mechanism is complementary to the classical theories of crystal growth.PostprintPeer reviewe

Re-channelization of turbidity currents in South China Sea abyssal plain due to seamounts and ridges

Turbidity currents can be characterized as net-erosive, net-depositional or net-bypassing. Whether a flow is erosive, depositional or bypasses depends on the flow velocity, concentration and size but these can also be impacted by external controls such as the degree of confinement, slope gradient and substrate type and erodibility. Our understanding of the relative importance of these controls comes from laboratory experiments and numerical modelling, as well as from field data due to the proliferation of high-resolution 3D seismic and bathymetric data, as well as the outcrop and rock record. In this study, based on extensive multibeam and seismic reflection surveys in combination with International Ocean Discovery Program cores from the South China Sea, we document a new mechanism of turbidity current transformation from depositional to erosive resulting in channel incision. We show how confinement by seamounts and bedrock highs of previously unconfined turbidity currents has resulted in the development of seafloor channels. These channels are inferred to be the result of confinement of flows, which have traversed the abyssal plain, leading to flow acceleration allowing them to erode the seafloor substrate. This interpretation is further supported by the coarsening of flow deposits within the area of the seamounts, indicating that confinement has increased flow competency, allowing turbidity currents to carry larger volumes of coarse sediment which has been deposited in this region. This basin-scale depositional pattern suggests that pre-established basin topography can have an important control on sedimentation which can impact characteristics such as potential hydrocarbon storage

Contourite processes associated with the overflow of Pacific Deep Water within the Luzon Trough: Conceptual and regional implications

Overflows through oceanic gateways govern the exchange of water masses in the world's ocean basins. These exchanges also involve energy, salinity, nutrients, and carbon. As such, the physical features that control overflow can exert a strong influence on regional and global climate. Here, we present the first description of sedimentary processes generated by the overflow of Pacific Deep Water (OPDW). This mass flows southward at approximately 2000–3450 m water depth within the Luzon Trough (gateway) from the Pacific Ocean into the South China Sea. OPDW can be divided into: a) a lower, denser layer (including an associated weak counter-current), which has generated a large contourite depositional system (CDS-1) that includes large erosional (channel and moat), depositional (mounded and plastered drift), and mixed (terrace) contourite features along the trough bottom and walls, and b) an upper mixing layer, which has not generated any significant depositional or erosional contourite features. Where OPDW does not reach the seafloor, it is underlain by bottom water that circulates more sluggishly but has generated a second contourite depositional system (CDS-2) made of a large sheet-like drift. The OPDW flow has generally enhanced since the middle to late Miocene, except in the shallower northernmost corridor. In the deeper main trough, reductions in width and depth of the gateway by Taiwan orogenic events have likely accelerated the overflow. The latest significant enhancening may promote widespread development of contourite depositional systems along the South China Sea's lower continental slope and adjacent deeper areas. This work highlights the importance of gateway-confined overflows in controlling the morphology and sedimentary evolution of adjacent deep marine sedimentary systems. A clear understanding of overflow processes and their products is essential for decoding tectonic control in oceanographic or paleoceanographic processes

The role of ARL4C in predicting prognosis and immunotherapy drug susceptibility in pan-cancer analysis

Background: ARLs, which are a class of small GTP-binding proteins, play a crucial role in facilitating tumor tumorigenesis and development. ARL4C, a vital member of the ARLs family, has been implicated in the progression of tumors, metastatic dissemination, and development of resistance to therapeutic drugs. Nevertheless, the precise functional mechanisms of ARL4C concerning tumor prognosis and immunotherapy drug susceptibility remain elusive.Methods: By combining the GTEx and TCGA databases, the presence of ARL4C was examined in 33 various types of cancer. Immunohistochemistry and immunofluorescence staining techniques were utilized to confirm the expression of ARL4C in particular tumor tissues. Furthermore, the ESTIMATE algorithm and TIMER2.0 database were utilized to analyze the tumor microenvironment and immune infiltration associated with ARL4C. The TISCH platform facilitated the utilization of single-cell RNA-seq datasets for further analysis. ARL4C-related immune escape was investigated using the TISMO tool. Lastly, drug sensitivity analysis was conducted to assess the sensitivity of different types of tumors to compounds based on the varying levels of ARL4C expression.Results: The study found that ARL4C was highly expressed in 23 different types of cancer. Moreover, the presence of high ARL4C expression was found to be associated with a poor prognosis in BLCA, COAD, KIRP, LGG, and UCEC. Notably, ARL4C was also expressed in immune cells, and its high expression was found to be correlated with cancer immune activation. Most importantly, the drug sensitivity analysis revealed a positive correlation between ARL4C expression and the heightened sensitivity of tumors to Staurosporine, Midostaurin, and Nelarabine.Conclusion: The findings from our study indicate that the expression level of ARL4C may exert an influence on cancer development, prognosis, and susceptibility to immunotherapy drugs. In addition, the involvement of ARL4C in the tumor immune microenvironment has expanded the concept of ARL4C-targeted immunotherapy