3,431 research outputs found
Did Earth-approaching asteroids 3551, 3908, or 4055 produce meteorites?
Orbital integrations show that Amor asteroid 3908 could have ejected one out of four plausible groups of meteorite producing fireballs during a collision in the asteroid belt. It was suggested by others that such a collision may also have split asteroids 3551 and 3908. A member of this group of fireballs is listed as one of the better possibilities for recovery
Elucidating the Molecular Function of Reprolysin Metalloproteases in Tick-Host-Pathogen Interaction
Ticks are ectoparasites that attach to their host for many days to weeks, feeding to engorgement and continuing their species life cycle. The mechanisms behind the successful feeding and manipulation of host immune responses have been associated with the secretion of their specialized saliva. Tick saliva includes a variety of modulatory molecules that must disrupt and counteract defense mechanisms, including a variety of proteases. Reprolysin Metalloproteases, in the Zn2+ dependent family, is secreted as a proenzyme and is shown to have proteolytic activity, degrading fibrinogen and gelatinase activity, as well as disturbing homeostasis12. Previous work with the Amblyomma americanum sialotranscriptome identified over 40 metalloproteases secreted in the saliva during the ticksâ feeding. A. americanum is a carrier of multiple diseases, including Ehrlichia chaffeensis, the causative agent of Human Monocyte Ehrlichiosis. This experiment consisted of two main goals: the first was to characterize A. americanum Reprolysin Metalloproteases, and the second to gain a better insight into the relationship between this tick and E. chaffeensis, a pathogen very understudied within the tick vector and has proved problematic for animal model studies
Approximate Green's Function Coupled Cluster Method Employing Effective Dimension Reduction
The Green's function coupled cluster (GFCC) method is a powerful many-body
tool for computing the electronic structure of molecular and periodic systems,
especially when electrons of the system are strongly correlated. However, for
the GFCC to be routinely used in the electronic structure calculations, robust
numerical techniques and approximations must be employed to reduce its high
computational overhead. In our recent studies, we demonstrated that the GFCC
equations can be solved directly in the frequency domain using iterative linear
solvers, which can be easily distributed in a massively parallel environment.
In the present work, we demonstrate a successful application of
model-order-reduction (MOR) techniques in the GFCC framework. Briefly, for a
frequency regime which requires high resolution spectral function, instead of
solving GFCC linear equation of full dimension for every single frequency
point, an efficiently-solvable linear system model of a reduced dimension may
be built upon projecting the original GFCC linear system onto a subspace. From
this reduced order model is obtained a reasonable approximation to the full
dimensional GFCC linear equations in both interpolative and extrapolative
spectral regions. Here, we show that the subspace can be properly constructed
in an iterative manner from the auxiliary vectors of the GFCC linear equations
at some selected frequencies within the spectral region of interest. During the
iterations, the quality of the subspace and the linear system model can be
systematically improved. The method is tested in terms of the efficiency and
accuracy of computing spectral functions for some typical molecular systems
such as carbon monoxide, 1,3-butadiene, benzene, and adenine. As a byproduct,
the obtained reduced order model may provide a high quality initial guess which
improves the convergence rate for the existing iterative linear solver.Comment: 29 pages, 8 figure
Multichannel quantum-defect theory for slow atomic collisions
We present a multichannel quantum-defect theory for slow atomic collisions
that takes advantages of the analytic solutions for the long-range potential,
and both the energy and the angular-momentum insensitivities of the short-range
parameters. The theory provides an accurate and complete account of scattering
processes, including shape and Feshbach resonances, in terms of a few
parameters such as the singlet and the triplet scattering lengths. As an
example, results for Na-Na scattering are presented and compared
close-coupling calculations.Comment: 8 pages, 3 figure
Another Sogdian-Chinese bilingual epitaph
AbstractTwo stone tablets in the Wangye Museum, Shenzhen, contain a bilingual Sogdian and Chinese epitaph for a Sogdian merchant and his wife, who lived in the northern Chinese city of Ye éŽ in the late sixth centuryce. The two texts are published here for the first time and accompanied by a detailed commentary on philological and historical points of interest.</jats:p
An excited state underlies gene regulation of a transcriptional riboswitch
Riboswitches control gene expression through ligand-dependent structural rearrangements of the sensing aptamer domain. However, we found that the Bacillus cereus fluoride riboswitch aptamer adopts identical tertiary structures in solution with and without ligand. Using chemical exchange saturation transfer (CEST) NMR spectroscopy, we revealed that the structured ligand-free aptamer transiently accesses a low-populated (~1%) and short-lived (~3 ms) excited conformational state that unravels a conserved âlinchpinâ base pair to signal transcription termination. Upon fluoride binding, this highly localized fleeting process is allosterically suppressed to activate transcription. We demonstrated that this mechanism confers effective fluoride-dependent gene activation over a wide range of transcription rates, which is essential for robust toxicity response across diverse cellular conditions. These results unveil a novel switching mechanism that employs ligand-dependent suppression of an aptamer excited state to coordinate regulatory conformational transitions rather than adopting distinct aptamer ground-state tertiary architectures, exemplifying a new mode of ligand-dependent RNA regulation
Hurricane Florence Flooding in Georgetown County: A Qualitative Explanation of the Interactions of Estuary and Tidal River
This paper examines data from 18 USGS gauges in the lower Pee Dee Basin in an effort to explain the behavior of the flooding following Hurricane Florence (2018) in Georgetown County, South Carolina. Despite record or near-record flooding in all the tributaries to the Winyah Bay estuary, water levels near the city of Georgetown were well below predicted heights. Floodplain storage in the lower Great Pee Dee, Lynches, and Little Pee Dee River valleys stored over 1.2 million acre-feet of floodwaters, delaying peak stage near Bucksport for five days and reducing peak flow into the Winyah Bay tidal river/estuary system by nearly 50%. An unknown amount of flow from the Winyah Bay tidal river/estuary system flowed through the Atlantic Intracoastal Water Way to Little River rather than through Winyah Bay. The resulting freshwater flow to Winyah Bay only moved the point of tidal stagnation (where upstream tidal flow balances downstream freshwater flow) to near Georgetown. Since the city of Georgetown was near the point of stagnation, water level there was driven by ocean tidal height rather than river flood stage. The lack of discharge data from the tidal rivers in Georgetown County prevents evaluation of the importance of each of these factors and will limit efforts to make quantitative predictions of future flooding in the county
Runoff Generation from Shallow Water Table Southeastern Forested Watersheds: Unusual Behavior of Paired Watersheds Following Major Disturbance
2012 S.C. Water Resources Conference - Exploring Opportunities for Collaborative Water Research, Policy and Managemen
Tissue specific induction of p62/sqstm1 by farnesoid X receptor
Background: Farnesoid X Receptor (FXR) is a member of the nuclear receptor superfamily and is a ligand-activated transcription factor essential for maintaining liver and intestinal homeostasis. FXR is protective against carcinogenesis and inflammation in liver and intestine as demonstrated by the development of inflammation and tumors in the liver and intestine of FXR knock-out mice. However, mechanisms for the protective effects of FXR are not completely understood. This study reports a novel role of FXR in regulating expression of Sqstm1, which encodes for p62 protein. p62 plays an important role in maintaining cellular homeostasis through selective autophagy and activating signal transduction pathways, such as NF-ÎșB to support cell survival and caspase-8 to initiate apoptosis. FXR regulation of Sqstm1 may serve as a protective mechanism. Methods and Results: This study showed that FXR bound to the Sqstm1 gene in both mouse livers and ileums as determined by chromatin immunoprecipitation. In addition, FXR activation enhanced transcriptional activation of Sqstm1 in vitro. However, wild-type mice treated with GW4064, a synthetic FXR ligand, showed that FXR activation induced mRNA and protein expression of Sqstm1/p62 in ileum, but not in liver. Interestingly, FXR-transgenic mice showed induced mRNA expression of Sqstm1 in both liver and ileum compared to wild-type mice. Conclusions: Our current study has identified a novel role of FXR in regulating the expression of p62, a key factor in protein degradation and cell signaling. Regulation of p62 by FXR indicates tissue-specific and gene-dosage effects. Furthermore, FXR-mediated induction of p62 may implicate a protective mechanism of FXR. © 2012 Williams et al
LRP5 (low density lipoprotein receptor-related protein 5)
Review on LRP5 (low density lipoprotein receptor-related protein 5), with data on DNA, on the protein encoded, and where the gene is implicated
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