The Properties of Terrestrial Laser System Intensity for Measuring Leaf Geometries: A Case Study with Conference Pear Trees (Pyrus Communis)

Light Detection and Ranging (LiDAR) technology can be a valuable tool for describing and quantifying vegetation structure. However, because of their size, extraction of leaf geometries remains complicated. In this study, the intensity data produced by the Terrestrial Laser System (TLS) FARO LS880 is corrected for the distance effect and its relationship with the angle of incidence between the laser beam and the surface of the leaf of a Conference Pear tree (Pyrus Commmunis) is established. The results demonstrate that with only intensity, this relationship has a potential for determining the angle of incidence with the leaves surface with a precision of ±5° for an angle of incidence smaller than 60°, whereas it is more variable for an angle of incidence larger than 60°. It appears that TLS beam footprint, leaf curvatures and leaf wrinkles have an impact on the relationship between intensity and angle of incidence, though, this analysis shows that the intensity of scanned leaves has a potential to eliminate ghost points and to improve their meshing

Reconstruction of missing data in satellite images of the Southern North Sea using a convolutional neural network (DINCAE)

peer reviewedA neural network with the architecture of a convolutional autoencoder is used to reconstruct missing data in satellite images of the Southern North Sea. The technique is applied to a multi-satellite data product of chlorophyll-a and total suspended particulate matter (SPM) concentration (representing 20 years of data). The presence of clouds significantly reduces the extent of the ocean that can be measured by satellite sensors using the visible or infrared spectrum. The accuracy of the reconstruction is assessed using cross-validation (i.e. increasing the actual extent of the cloud coverage). The results of the neural network compare favourably the data withheld for cross-validation.MultiSyn

Analysis of 23 Years of Daily Cloud-Free Chlorophyll and Suspended Particulate Matter in the Greater North Sea

Satellite-derived estimates of ocean color variables are available for several decades now and allow performing studies of the long-term changes occurred in an ecosystem. A daily, gap-free analysis of chlorophyll (CHL) and suspended particulate matter (SPM, indicative of light availability in the subsurface) at 1 km resolution over the Greater North Sea during the period 1998–2020 is presented. Interannual changes are described, with maximum average CHL values increasing during the period 1998–2008, a slightly decreasing trend in 2009–2017 and an stagnation in recent years. The typical spring bloom is observed to happen earlier each year, with about 1 month difference between 1998 and 2020. The duration of the bloom (time between onset and offset) appears also to be increasing with time, but the average CHL value during the spring bloom does not show a clear trend. The causes for earlier spring blooms are still unclear, although a rising water temperature can partially explain them through enhanced phytoplankton cell division rates or through increased water column stratification. SPM values during winter months (prior to the development of the spring bloom) do not exhibit a clear trend over the same period, although slightly higher SPM values are observed in recent years. The influence of sea surface temperature in the spring bloom timing appears to be dominant over the influence of SPM concentration, according to our results. The number of satellites available over the years for producing CHL and SPM in this work has an influence in the total amount of available data before interpolation. The amount of missing data has an influence in the total variability that is retained in the final dataset, and our results suggest that at least three satellites would be needed for a good representation of ocean color variability.MultiSyn

Coastal turbidity derived from PROBA-V global vegetation satellite

PROBA-V (Project for On-Board Autonomy-Vegetation) is a global vegetation monitoring satellite. The spectral quality of the data and the coverage of PROBA-V over coastal waters provide opportunities to expand its use to other applications. This study tests PROBA-V data for the retrieval of turbidity in the North Sea region. In the first step, clouds were masked and an atmospheric correction, using an adapted version of iCOR, was performed. The resulted water leaving radiance reflectance was validated against AERONET-OC stations, yielding a coefficient of determination of 0.884 in the RED band. Next, turbidity values were retrieved using the RED band. The PROBA-V retrieved turbidity data was compared with turbidity data from CEFAS Smartbuoys and ad-hoc measurement campaigns. This resulted in a coefficient of determination of 0.69. Finally, a time series of 1.5 year of PROBA-V derived turbidity data was plotted over MODIS data to check consistencies in both datasets. Seasonal dynamics were noted with high turbidity in autumn and winter and low values in spring and summer. For low values, PROBA-V and MODIS yielded similar results, but while MODIS seems to saturate around 50 FNU, PROBA-V can reach values up till almost 80 FNU

Atmospheric correction of Landsat-8/OLI and Sentinel-2/MSI data using iCOR algorithm: validation for coastal and inland waters

Image correction for atmospheric effects (iCOR) is an atmospheric correction tool that can process satellite data collected over coastal, inland or transitional waters and land. The tool is adaptable with minimal effort to hyper- or multi-spectral radiometric sensors. By using a single atmospheric correction implementation for land and water, discontinuities in reflectance within one scene are reduced. iCOR derives aerosol optical thickness from the image and allows for adjacency correction, which is SIMilarity Environmental Correction (SIMEC) over water. This paper illustrates the performance of iCOR for Landsat-8 OLI and Sentinel-2 MSI data acquired over water. An intercomparison of water leaving reflectance between iCOR and Aerosol Robotic Network – Ocean Color provided a quantitative assessment of performance and produced coefficient of determination (R2) higher than 0.88 in all wavebands except the 865 nm band. For inland waters, the SIMEC adjacency correction improved results in the red-edge and near-infrared region in relation to optical in situ measurements collected during field campaigns

Webcams for Bird Detection and Monitoring: A Demonstration Study

Better insights into bird migration can be a tool for assessing the spread of avian borne infections or ecological/climatologic issues reflected in deviating migration patterns. This paper evaluates whether low budget permanent cameras such as webcams can offer a valuable contribution to the reporting of migratory birds. An experimental design was set up to study the detection capability using objects of different size, color and velocity. The results of the experiment revealed the minimum size, maximum velocity and contrast of the objects required for detection by a standard webcam. Furthermore, a modular processing scheme was proposed to track and follow migratory birds in webcam recordings. Techniques such as motion detection by background subtraction, stereo vision and lens distortion were combined to form the foundation of the bird tracking algorithm. Additional research to integrate webcam networks, however, is needed and future research should enforce the potential of the processing scheme by exploring and testing alternatives of each individual module or processing step

Assessment of Light Environment Variability in Broadleaved Forest Canopies Using Terrestrial Laser Scanning

Light availability inside a forest canopy is of key importance to many ecosystem processes, such as photosynthesis and transpiration. Assessment of light availability and within-canopy light variability enables a more detailed understanding of these biophysical processes. The changing light-vegetation interaction in a homogeneous oak (Quercus robur L.) stand was studied at different moments during the growth season using terrestrial laser scanning datasets and ray tracing technology. Three field campaigns were organized at regular time intervals (24 April 2008; 07 May 2008; 23 May 2008) to monitor the increase of foliage material. The laser scanning data was used to generate 3D representations of the forest stands, enabling structure feature extraction and light interception modeling, using the Voxel-Based Light Interception Model (VLIM). The VLIM is capable of estimating the relative light intensity or Percentage of Above Canopy Light (PACL) at any arbitrary point in the modeled crown space. This resulted in a detailed description of the dynamic light environments inside the canopy. Mean vertical light extinction profiles were calculated for the three time frames, showing significant differences in light attenuation by the canopy between April 24 on the one hand, and May 7 and May 23 on the other hand. The proposed methodology created the opportunity to link these within-canopy light distributions to the increasing amount of photosynthetically active leaf material and its distribution in the considered 3D space

Correction of Erroneous LiDAR Measurements in Artificial Forest Canopy Experimental Setups

Terrestrial laser scanning (TLS) data makes possible to directly characterize the three-dimensional (3D) distribution of canopy foliage elements. The scanned edges of these elements may result in incorrectly point measurements (i.e., “ghost points”) impacting the quality of point cloud data. Therefore, estimation of the ghost points’ spatial visibilities, measurement of their characteristics and their removal are essential. In order to quantify the improvements on data quality, a method is developed in this study to efficiently correct for ghost points. Since the occurrence of ghost points is governed by a number of factors, (e.g., scanning resolution and distance, object properties, incident angle); the developed method is based on the analysis of the effects of these factors under controlled conditions where canopy-like objects (i.e., leaves, branches and layers of leaves) were scanned using a continuous-wave TLS system that employs phase-shift technology. Manual extraction of ghost points was done in order to calculate the relative amount of ghost points per scan, or ghost points ratio (gpr). The gpr values were computed in order to: (i) analyze their relationships with variables representing the above factors; and (ii) be used as a reference to evaluate the performance of filters used for extraction of ghost points. The ghost points’ occurrence was modeled by fitting regression models using different predictor variables that represent the variables under study. The obtained results indicated that reduced models with three predictors were suitable for gpr estimation in artificial leaves and in artificial branches, with a relative root mean squared error (RMSE) of 4.7% and 3.7%, respectively; while the full model with four predictors was appropriate for artificial layers of leaves, with relative RMSE of 4.5%. According to the statistical analysis, scanning distance was identified as the most important variable for modeling ghost points occurrence. Results indicated that optimized distance-based filters relative to the scanning distance have improved the outcomes in ghost points detection, in comparison to standard filtering criteria. These results suggest that more accurate characterization of forest canopy 3D structures can be achieved by removing ghost points using the new developed method

Identification of potential surface water resources for inland aquaculture from Sentinel-2 images of the Rwenzori region of Uganda

Aquaculture has the potential to sustainably meet the growing demand for animal protein. The availability of water is essential for aquaculture development, but there is no knowledge about the potential inland water resources of the Rwenzori region of Uganda. Though remote sensing is popularly utilized during studies involving various aspects of surface water, it has never been employed in mapping inland water bodies of Uganda. In this study, we assessed the efficiency of seven remote-sensing derived water index methods to map the available surface water resources in the Rwenzori region using moderate resolution Sentinel 2A/B imagery. From the four targeted sites, the Automated Water Extraction Index for urban areas (AWEInsh) and shadow removal (AWEIsh) were the best at identifying inland water bodies in the region. Both AWEIsh and AWEInsh consistently had the highest overall accuracy (OA) and kappa (OA > 90%, kappa > 0.8 in sites 1 and 2; OA > 84.9%, kappa > 0.61 in sites 3 and 4), as well as the lowest omission errors in all sites. AWEI was able to suppress classification noise from shadows and other non-water dark surfaces. However, none of the seven water indices used during this study was able to efficiently extract narrow water bodies such as streams. This was due to a combination of factors like the presence of terrain shadows, a dense vegetation cover, and the image resolution. Nonetheless, AWEI can efficiently identify other surface water resources such as crater lakes and rivers/streams that are potentially suitable for aquaculture from moderate resolution Sentinel 2A/B imagery

Assessing the Impact of Canopy Structure Simplification in Common Multilayer Models on Irradiance Absorption Estimates of Measured and Virtually Created Fagus sylvatica (L.) Stands

Multilayer canopy representations are the most common structural stand representations due to their simplicity. Implementation of recent advances in technology has allowed scientists to simulate geometrically explicit forest canopies. The effect of simplified representations of tree architecture (i.e., multilayer representations) of four Fagus sylvatica (L.) stands, each with different LAI, on the light absorption estimates was assessed in comparison with explicit 3D geometrical stands. The absorbed photosynthetic radiation at stand level was calculated. Subsequently, each geometrically explicit 3D stand was compared with three multilayer models representing horizontal, uniform, and planophile leaf angle distributions. The 3D stands were created either by in situ measured trees or by modelled trees generated with the AMAP plant growth software. The Physically Based Ray Tracer (PBRT) algorithm was used to simulate the irradiance absorbance of the detailed 3D architecture stands, while for the three multilayer representations, the probability of light interception was simulated by applying the Beer-Lambert’s law. The irradiance inside the canopies was characterized as direct, diffuse and scattered irradiance. The irradiance absorbance of the stands was computed during eight angular sun configurations ranging from 10° (near nadir) up to 80° sun zenith angles. Furthermore, a leaf stratification (the number and angular distribution of leaves per LAI layer inside a canopy) analysis between the 3D stands and the multilayer representations was performed, indicating the amount of irradiance each leaf is absorbing along with the percentage of sunny and shadow leaves inside the canopy. The results reveal that a multilayer representation of a stand, using a multilayer modelling approach, greatly overestimated the absorbed irradiance in an open canopy, while it provided a better approximation in the case of a closed canopy. Moreover, the actual stratification of leaves differed significantly between a multilayer representation and a 3D architecture canopy of the same LAI. The deviations in irradiance absorbance were caused by canopy structure, clumping and positioning of leaves. Although it was found that the use of canopy simplifications for modelling purposes in closed canopies is demonstrated as a valid option, special care should be taken when considering forest stands irradiance simulation for sparse canopies and particularly on higher sun zenith angles where the surrounding trees strongly affect the absorbed irradiance and results can highly deviate from the multilayer assumptions