492 research outputs found
New Physics with three-photon events at LEP
The effect of the most general \z3gt vertex in the reaction e^+e^- \ra
3\gamma is studied with a particular attention to LEP searches. We give exact
analytical expressions including realistic cuts for the signal and present a
detailed analysis based on a Monte Carlo that includes the effect of the
irreducible QED cross section. As special applications we discuss the
effect of heavy scalars, fermions and gauge bosons and comment on the
``monopole" connection.Comment: No changes made from previous version, 34 pages, LateX, uses epsf, 11
.eps figs., full paper (including figs) is also available via WWW at
http://lapphp0.in2p3.fr/preplapp/psth/lastee3g.ps.gz or via anonymous ftp at
ftp:///lapphp0.in2p3.fr/pub/preprints-theorie/ftpee3g.u
Forest resampling for distributed sequential Monte Carlo
This paper brings explicit considerations of distributed computing
architectures and data structures into the rigorous design of Sequential Monte
Carlo (SMC) methods. A theoretical result established recently by the authors
shows that adapting interaction between particles to suitably control the
Effective Sample Size (ESS) is sufficient to guarantee stability of SMC
algorithms. Our objective is to leverage this result and devise algorithms
which are thus guaranteed to work well in a distributed setting. We make three
main contributions to achieve this. Firstly, we study mathematical properties
of the ESS as a function of matrices and graphs that parameterize the
interaction amongst particles. Secondly, we show how these graphs can be
induced by tree data structures which model the logical network topology of an
abstract distributed computing environment. Thirdly, we present efficient
distributed algorithms that achieve the desired ESS control, perform resampling
and operate on forests associated with these trees
Hepatocellular Carcinoma Displays Distinct DNA Methylation Signatures with Potential as Clinical Predictors
BACKGROUND: Hepatocellular carcinoma (HCC) is characterized by late detection and fast progression, and it is believed that epigenetic disruption may be the cause of its molecular and clinicopathological heterogeneity. A better understanding of the global deregulation of methylation states and how they correlate with disease progression will aid in the design of strategies for earlier detection and better therapeutic decisions. METHODS AND FINDINGS: We characterized the changes in promoter methylation in a series of 30 HCC tumors and their respective surrounding tissue and identified methylation signatures associated with major risk factors and clinical correlates. A wide panel of cancer-related gene promoters was analyzed using Illumina bead array technology, and CpG sites were then selected according to their ability to classify clinicopathological parameters. An independent series of HCC tumors and matched surrounding tissue was used for validation of the signatures. We were able to develop and validate a signature of methylation in HCC. This signature distinguished HCC from surrounding tissue and from other tumor types, and was independent of risk factors. However, aberrant methylation of an independent subset of promoters was associated with tumor progression and etiological risk factors (HBV or HCV infection and alcohol consumption). Interestingly, distinct methylation of an independent panel of gene promoters was strongly correlated with survival after cancer therapy. CONCLUSION: Our study shows that HCC tumors exhibit specific DNA methylation signatures associated with major risk factors and tumor progression stage, with potential clinical applications in diagnosis and prognosis
An Adaptive Interacting Wang-Landau Algorithm for Automatic Density Exploration
While statisticians are well-accustomed to performing exploratory analysis in
the modeling stage of an analysis, the notion of conducting preliminary
general-purpose exploratory analysis in the Monte Carlo stage (or more
generally, the model-fitting stage) of an analysis is an area which we feel
deserves much further attention. Towards this aim, this paper proposes a
general-purpose algorithm for automatic density exploration. The proposed
exploration algorithm combines and expands upon components from various
adaptive Markov chain Monte Carlo methods, with the Wang-Landau algorithm at
its heart. Additionally, the algorithm is run on interacting parallel chains --
a feature which both decreases computational cost as well as stabilizes the
algorithm, improving its ability to explore the density. Performance is studied
in several applications. Through a Bayesian variable selection example, the
authors demonstrate the convergence gains obtained with interacting chains. The
ability of the algorithm's adaptive proposal to induce mode-jumping is
illustrated through a trimodal density and a Bayesian mixture modeling
application. Lastly, through a 2D Ising model, the authors demonstrate the
ability of the algorithm to overcome the high correlations encountered in
spatial models.Comment: 33 pages, 20 figures (the supplementary materials are included as
appendices
Using item response theory to explore the psychometric properties of extended matching questions examination in undergraduate medical education
BACKGROUND:
As assessment has been shown to direct learning, it is critical that the examinations developed to test clinical competence in medical undergraduates are valid and reliable. The use of extended matching questions (EMQ) has been advocated to overcome some of the criticisms of using multiple-choice questions to test factual and applied knowledge.
METHODS:
We analysed the results from the Extended Matching Questions Examination taken by 4th year undergraduate medical students in the academic year 2001 to 2002. Rasch analysis was used to examine whether the set of questions used in the examination mapped on to a unidimensional scale, the degree of difficulty of questions within and between the various medical and surgical specialties and the pattern of responses within individual questions to assess the impact of the distractor options.
RESULTS:
Analysis of a subset of items and of the full examination demonstrated internal construct validity and the absence of bias on the majority of questions. Three main patterns of response selection were identified.
CONCLUSION:
Modern psychometric methods based upon the work of Rasch provide a useful approach to the calibration and analysis of EMQ undergraduate medical assessments. The approach allows for a formal test of the unidimensionality of the questions and thus the validity of the summed score. Given the metric calibration which follows fit to the model, it also allows for the establishment of items banks to facilitate continuity and equity in exam standards
Quantitative Estimation of Wheat Phenotyping Traits Using Ground and Aerial Imagery
This study evaluates an aerial and ground imaging platform for assessment of canopy development in a wheat field. The dependence of two canopy traits, height and vigour, on fertilizer treatment was observed in a field trial comprised of ten varieties of spring wheat. A custom-built mobile ground platform (MGP) and an unmanned aerial vehicle (UAV) were deployed at the experimental site for standard red, green and blue (RGB) image collection on five occasions. Meanwhile, reference field measurements of canopy height and vigour were manually recorded during the growing season. Canopy level estimates of height and vigour for each variety and treatment were computed by image analysis. The agreement between estimates from each platform and reference measurements was statistically analysed. Estimates of canopy height derived from MGP imagery were more accurate (RMSE = 3.95 cm, R2 = 0.94) than estimates derived from UAV imagery (RMSE = 6.64 cm, R2 = 0.85). In contrast, vigour was better estimated using the UAV imagery (RMSE = 0.057, R2 = 0.57), compared to MGP imagery (RMSE = 0.063, R2 = 0.42), albeit with a significant fixed and proportional bias. The ability of the platforms to capture differential development of traits as a function of fertilizer treatment was also investigated. Both imaging methodologies observed a higher median canopy height of treated plots compared with untreated plots throughout the season, and a greater median vigour of treated plots compared with untreated plots exhibited in the early growth stages. While the UAV imaging provides a high-throughput method for canopy-level trait determination, the MGP imaging captures subtle canopy structures, potentially useful for fine-grained analyses of plants
Bayesian Methods for Exoplanet Science
Exoplanet research is carried out at the limits of the capabilities of
current telescopes and instruments. The studied signals are weak, and often
embedded in complex systematics from instrumental, telluric, and astrophysical
sources. Combining repeated observations of periodic events, simultaneous
observations with multiple telescopes, different observation techniques, and
existing information from theory and prior research can help to disentangle the
systematics from the planetary signals, and offers synergistic advantages over
analysing observations separately. Bayesian inference provides a
self-consistent statistical framework that addresses both the necessity for
complex systematics models, and the need to combine prior information and
heterogeneous observations. This chapter offers a brief introduction to
Bayesian inference in the context of exoplanet research, with focus on time
series analysis, and finishes with an overview of a set of freely available
programming libraries.Comment: Invited revie
The Standard Model with gravity couplings
In this paper, we examine the coupling of matter fields to gravity within the
framework of the Standard Model of particle physics. The coupling is described
in terms of Weyl fermions of a definite chirality, and employs only
(anti)self-dual or left-handed spin connection fields. It is known from the
work of Ashtekar and others that such fields can furnish a complete description
of gravity without matter. We show that conditions ensuring the cancellation of
perturbative chiral gauge anomalies are not disturbed. We also explore a global
anomaly associated with the theory, and argue that its removal requires that
the number of fundamental fermions in the theory must be multiples of 16. In
addition, we investigate the behavior of the theory under discrete
transformations P, C and T; and discuss possible violations of these discrete
symmetries, including CPT, in the presence of instantons and the
Adler-Bell-Jackiw anomaly.Comment: Extended, and replaced with LaTex file. 25 Page
Higgs particles
Report of the Higgs Working Group to appear in the Proceedings of the Workshop "Physics with \ee Linear Colliders", Annecy-Gran Sasso-Hamburg, Feb. 4 - Sept. 1, 1995, P.M. Zerwas (editor)
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