Atomistic study of lipid membranes containing chloroform: looking for a lipid-mediated mechanism of anesthesia

The molecular mechanism of general anesthesia is still a controversial issue. Direct effect by linking of anesthetics to proteins and indirect action on the lipid membrane properties are the two hypotheses in conflict. Atomistic simulations of different lipid membranes subjected to the effect of small volatile organohalogen compounds are used to explore plausible lipid-mediated mechanisms. Simulations of homogeneous membranes reveal that electrostatic potential and lateral pressure transversal profiles are affected differently by chloroform (anesthetic) and carbon tetrachloride (non-anesthetic). Simulations of structured membranes that combine ordered and disordered regions show that chloroform molecules accumulate preferentially in highly disordered lipid domains, suggesting that the combination of both lateral and transversal partitioning of chloroform in the cell membrane could be responsible of its anesthetic action

Effects of some mixing flows on diffusion-controlled reactions = Efectes d'alguns fluxes de mescla en reaccions controlades per difusió

[spa] Los sistemas de reacción-difusión donde el proceso difusivo es la etapa lenta están controlados, a bajas dimensionalidades, por las fluctuaciones en las distribuciones iniciales de reactivos. Concretamente, estos sistemas se segregan en dominios de las diferentes especies obteniéndose comportamientos cinéticos anómalos. Estudiamos estos comportamientos no formales en el sistema reactivo binario A+B=O mediante la explotación analítica y numérica de las ecuaciones deterministas de reacción-difusión para las concentraciones locales de ambos reactivos suponiendo válida la aproximación de campo medio para el término de reacción. En una segunda parte del trabajo se ha incorporado al modelo un tercer proceso, el de mezcla, con el que intentamos homogeneizar el sistema y recuperar el comportamiento cinético clásico. Trabajamos principalmente con dos flujos hidrodinámicos bidimensionales, el de red de remolinos y el turbulento. Si bien en ambos casos a tiempos intermedios recuperamos la conducta clásica, a tiempos suficientemente grandes conseguimos evitar la segregación del sistema

Effects of some mixing flows on diffusion-controlled reactions = Efectes d'alguns fluxes de mescla en reaccions controlades per difusió

Los sistemas de reacción-difusión donde el proceso difusivo es la etapa lenta están controlados, a bajas dimensionalidades, por las fluctuaciones en las distribuciones iniciales de reactivos. Concretamente, estos sistemas se segregan en dominios de las diferentes especies obteniéndose comportamientos cinéticos anómalos. Estudiamos estos comportamientos no formales en el sistema reactivo binario A+B=O mediante la explotación analítica y numérica de las ecuaciones deterministas de reacción-difusión para las concentraciones locales de ambos reactivos suponiendo válida la aproximación de campo medio para el término de reacción. En una segunda parte del trabajo se ha incorporado al modelo un tercer proceso, el de mezcla, con el que intentamos homogeneizar el sistema y recuperar el comportamiento cinético clásico. Trabajamos principalmente con dos flujos hidrodinámicos bidimensionales, el de red de remolinos y el turbulento. Si bien en ambos casos a tiempos intermedios recuperamos la conducta clásica, a tiempos suficientemente grandes conseguimos evitar la segregación del sistema

Effects of Dimethyl Sulfoxide on Lipid Membrane Electroporation

Pores can be generated in lipid membranes by the application of an external electric field or by the addition of particular chemicals such as dimethyl sulfoxide (DMSO). Molecular dynamics (MD) has been shown to be a useful tool for unveiling many aspects of pore formation in lipid membranes in both situations. By means of MD simulations, we address the formation of electropores in cholesterol-containing lipid bilayers under the influence of DMSO. We show how a combination of physical and chemical mechanisms leads to more favorable conditions for generating membrane pores and, in particular, how the addition of DMSO to the medium significantly reduces the minimum electric field required to electroporate a lipid membrane. The strong alteration of membrane transversal properties and the energetic stabilization of the hydrophobic pore stage by DMSO provide the physicochemical mechanisms that explain this effec

Alteration of interleaflet coupling due to compounds displaying rapid translocation in lipid membranes

The spatial coincidence of lipid domains at both layers of the cell membrane is expected to play an important role in many cellular functions. Competition between the surface interleaflet tension and a line hydrophobic mismatch penalty are conjectured to determine the transversal behavior of laterally heterogeneous lipid membranes. Here, by a combination of molecular dynamics simulations, a continuum field theory and kinetic equations, I demonstrate that the presence of small, rapidly translocating molecules residing in the lipid bilayer may alter its transversal behavior by favoring the spatial coincidence of similar lipid phases

Interaction modes between nanosized grapheneflakes and liposomes: adsorption, insertion and membrane fusion

Background: Understanding the effects of graphene-based nanomaterials on lipid membranes is critical to determine their environmental impact and their efficiency in the biomedical context. Graphene has been reported to favourably interact with biological and model lipid membranes. Methods: We report on a systematic coarse-grained molecular dynamics study of the interaction modes of graphene nanometric flakes with POPC/cholesterol liposome membranes. We have simulated graphene layers with a variety of sizes and oxidation degrees, and we have analyzed the trajectories, the interaction modes, and the energetics of the observed phenomena.Results:Three interaction modes are reported. Graphene can be transiently adsorbed onto the liposome membrane and/or inserted in its hydrophobic region. Inserted nanosheets prefer a perpendicular orientation, and tilt in order to maximize the contact with phospholipid tails while avoiding the contact with cholesterol molecules.When placed between two liposomes, graphene facilitates their fusion in a single vesicle. Conclusions: Graphene can be temporary adsorbed on the liposome before insertion. Bilayer curvature has an influence on the orientation of inserted graphene particles. Cholesterol molecules are depleted from the surrounding of graphene particles. Graphene layers may catalyse membrane fusion by bypassing the energy barrier required in stalk formation. General significance: Nanometric graphene layers can be adsorbed/inserted in lipid-based membranes in different manners and affect the cholesterol distribution in the membrane, implying important consequences on the structure and functionality of biological cell membranes, and on the bioaccumulation of graphene in living organisms. The graphene-mediated mechanism opens new possibilities for vesicle fusion in the experimental context

Interplay of cytoskeletal activity and lipid phase stability in dynamic protein recruitment and clustering

Recent experiments have revealed that some membrane proteins aggregate to form clusters. This type of process has been proven to be dynamic and to be actively maintained by external kinetics. Additionally, this dynamic recruiting is cholesterol- and actin-dependent, suggesting that raft organization and cytoskeleton rearrangement play a crucial role. In the present study, we propose a simple model that provides a general framework to describe the dynamical behavior of lipid-protein assemblies. Our results suggest that lipid-mediated interactions and cytoskeleton-anchored proteins contribute to the modulation of such behavior. In particular, we find a resonant condition between the membrane protein and cytoskeleton dynamics that results in the invariance of the ratio of clustered proteins that is found in in vivo experimental observations

Self-organizing propagation patterns from dynamic self-assembly in monolayers

Propagation of localized orientational waves, as imaged by Brewster angle microscopy, is induced by low intensity linearly polarized light inside axisymmetric smectic-C confined domains in a photosensitive molecular thin film at the air/water interface (Langmuir monolayer). Results from numerical simulations of a model that couples photoreorientational effects and long-range elastic forces are presented. Differences are stressed between our scenario and the paradigmatic wave phenomena in excitable chemical media

Lipid vesicle interaction with hydrophobic surfaces: a coarse-grained molecular dynamics study

Active surfaces are presently tailored to cause specific effects on living cells, which can be useful in many fields. Their development requires the understanding of the molecular mechanisms of interaction between lipid-enveloped entities and solid surfaces. Here, using coarse-grained molecular dynamics simulations, we have analyzed the different interaction modes of coated substrates with lipid vesicles that mimic biological envelopes. For neutral and hydrophobically functionalized substrates, three action modes on contacting vesicles have been obtained including intact, partially broken, and completely destroyed vesicles. The molecular mechanisms for each interaction pathway and the corresponding energy balances have been analyzed in detail. Interestingly, we have shown that any specific action mode can be obtained by appropriately tailoring the wetting characteristics of the surface coating. In particular, we have shown that surfaces that are simultaneously hydrophobic and oleophilic are optimal to fully disrupt the contacting vesicle lipid bilayer

Effects of dimethyl sulfoxide in cholesterol-containing lipid membranes: a comparative study of experiments in silico and with cells

Dimethyl sulfoxide (DMSO) has been known to enhance cell membrane permeability of drugs or DNA. Molecular dynamics (MD) simulations with single-component lipid bilayers predicted the existence of three regimes of action of DMSO: membrane loosening, pore formation and bilayer collapse. We show here that these modes of action are also reproduced in the presence of cholesterol in the bilayer, and we provide a description at the atomic detail of the DMSO-mediated process of pore formation in cholesterol-containing lipid membranes. We also successfully explore the applicability of DMSO to promote plasma membrane permeability to water, calcium ions (Ca2+) and Yo-Pro-1 iodide (Yo-Pro-1) in living cell membranes. The experimental results on cells in culture can be easily explained according to the three expected regimes: in the presence of low doses of DMSO, the membrane of the cells exhibits undulations but no permeability increase can be detected, while at intermediate DMSO concentrations cells are permeabilized to water and calcium but not to larger molecules as Yo-Pro-1. These two behaviors can be associated to the MD-predicted consequences of the effects of the DMSO at low and intermediate DMSO concentrations. At larger DMSO concentrations, permeabilization is larger, as even Yo-Pro-1 can enter the cells as predicted by the DMSO-induced membrane-destructuring effects described in the MD simulations