Real-Time RFI Mitigation in Radio Astronomy

From the Washington University Senior Honors Thesis Abstracts (WUSHTA), Spring 2018. Published by the Office of Undergraduate Research. Joy Zalis Kiefer, Director of Undergraduate Research and Associate Dean in the College of Arts & Sciences; Lindsey Paunovich, Editor; Helen Human, Programs Manager and Assistant Dean in the College of Arts and Sciences Mentor: Richard Prestage, Green Bank Observatory, and James Buckle

Event Reconstruction in the Advanced Particle-Astrophysics Telescope

The Advanced Particle-Astrophysics Telescope (APT) is a concept for a gamma-ray space telescope operating in the keV to MeV energy range. Due to the nature of the telescope and the physics of detection, reconstructing initial photon trajectories can be very computationally complex. This is a barrier to the real-time detection of astrophysical transient phenomena such as Gamma Ray Bursts (GRBs), and a faster reconstruction algorithm is needed in order to effectively study them. In this project, we develop such an algorithm based on Boggs & Jean (2000) and discuss the effects of certain algorithmic parameters on computational performance. For testing, we create a simple model of Compton scattering and generate data from a uniform source distribution. Though less representative of physical phenomena, this allows for a more straightforward development process and sets up a test framework for future iterations of the project

Real-time RFI Mitigation in Radio Astronomy

As the use of wireless technology has increased around the world, Radio Frequency Interference (RFI) has become more and more of a problem for radio astronomers. Preventative measures exist to limit the presence of RFI, and programs exist to remove it from saved data, but the use of algorithms to detect and remove RFI as an observation is occurring is much less common. Such a method would be incredibly useful for observations in which the data must undergo several rounds of processing before being saved, as in pulsar timing studies. Strategies for real-time mitigation have been discussed and tested with simulated data, but ideally the results of any approach would be validated by a detailed comparison of the final data products with and without mitigation applied. The goal of this project is to develop an RFI mitigation approach based on strategies suggested by Buch et al.(2016) and to test this program on real data from the observation of pulsar J1713+0747 at the Green Bank Observatory in West Virginia. We use a Median Absolute Deviation (MAD) filter to identify interference in the observation and replace the compromised data with random Gaussian noise to match a characteristic radio signal from space. In order to verify our results, we analyze the pulsar’s timing residuals obtained both from the mitigated data and from data processed through offline RFI removal software. Comparing the two, our preliminary findings indicate that our program is able to significantly improve the quality of timing results from the observation

The Impact of Initial-Final Mass Relations on Black Hole Microlensing

Uncertainty in the initial-final mass relation (IFMR) has long been a problem in understanding the final stages of massive star evolution. One of the major challenges of constraining the IFMR is the difficulty of measuring the mass of non-luminous remnant objects (i.e. neutron stars and black holes). Gravitational wave detectors have opened the possibility of finding large numbers of compact objects in other galaxies, but all in merging binary systems. Gravitational lensing experiments using astrometry and photometry are capable of finding compact objects, both isolated and in binaries, in the Milky Way. In this work we improve the PopSyCLE microlensing simulation code in order to explore the possibility of constraining the IFMR using the Milky Way microlensing population. We predict that the Roman Space Telescope's microlensing survey will likely be able to distinguish different IFMRs based on the differences at the long end of the Einstein crossing time distribution and the small end of the microlensing parallax distribution, assuming the small ($\pi_E \lesssim 0.02$) microlensing parallaxes characteristic of black hole lenses are able to be measured accurately. We emphasize that future microlensing surveys need to be capable of characterizing events with small microlensing parallaxes in order to place the most meaningful constraints on the IFMR.Comment: 24 pages, 17 figures Accepted to Ap

Analyzing long-term performance of the Keck-II adaptive optics system

We present an analysis of the long-term performance of the W. M. Keck Observatory Laser Guide Star Adaptive Optics (LGS-AO) system and explore factors that influence the overall AO performance most strongly. Astronomical surveys can take years or decades to finish, so it is worthwhile to characterize the AO performance on such timescales in order to better understand future results. Keck Observatory has two of the longest-running LGS-AO systems in use today and represents an excellent test-bed for investigating large amounts of AO data. Here, we use LGS-AO observations of the Galactic Center (GC) from 2005 to 2019, all taken with the NIRC2 instrument on the Keck-II telescope, for our analysis. We combine image metrics with AO telemetry files, MASS/DIMM turbulence profiles, seeing information, and weather data in one cohesive dataset to highlight areas of potential performance improvement and train a simple machine learning algorithm to predict the delivered image quality given current atmospheric conditions. The complete dataset will be released to the public as a resource for testing new predictive control and PSF-reconstruction algorithms

Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

As sequencing costs decrease and availability of high fidelity long-read sequencing increases, generating experiment specific de novo genome assemblies becomes feasible. In many crop species, obtaining the genome of a hybrid or heterozygous individual is necessary for systems that do not tolerate inbreeding or for investigating important biological questions, such as hybrid vigor. However, most genome assembly methods that have been used in plants result in a merged single sequence representation that is not a true biologically accurate representation of either haplotype within a diploid individual. The resulting genome assembly is often fragmented and exhibits a mosaic of the two haplotypes, referred to as haplotype-switching. Important haplotype level information, such as causal mutations and structural variation is therefore lost causing difficulties in interpreting downstream analyses. To overcome this challenge, we have applied a method developed for animal genome assembly called trio-binning to an intra-specific hybrid of chili pepper (Capsicum annuum L. cv. HDA149 x Capsicum annuum L. cv. HDA330). We tested all currently available softwares for performing trio-binning, combined with multiple scaffolding technologies including Bionano to determine the optimal method of producing the best haplotype-resolved assembly. Ultimately, we produced highly contiguous biologically true haplotype-resolved genome assemblies for each parent, with scaffold N50s of 266.0 Mb and 281.3 Mb, with 99.6% and 99.8% positioned into chromosomes respectively. The assemblies captured 3.10 Gb and 3.12 Gb of the estimated 3.5 Gb chili pepper genome size. These assemblies represent the complete genome structure of the intraspecific hybrid, as well as the two parental genomes, and show measurable improvements over the currently available reference genomes. Our manuscript provides a valuable guide on how to apply trio-binning to other plant genomes

Analyzing long-term performance of the Keck-II adaptive optics system

We present an analysis of the long-term performance of the W. M. Keck Observatory Laser Guide Star Adaptive Optics (LGS-AO) system and explore factors that influence the overall AO performance most strongly. Astronomical surveys can take years or decades to finish, so it is worthwhile to characterize the AO performance on such timescales in order to better understand future results. Keck Observatory has two of the longest-running LGS-AO systems in use today and represents an excellent test-bed for investigating large amounts of AO data. Here, we use LGS-AO observations of the Galactic Center (GC) from 2005 to 2019, all taken with the NIRC2 instrument on the Keck-II telescope, for our analysis. We combine image metrics with AO telemetry files, MASS/DIMM turbulence profiles, seeing information, and weather data in one cohesive dataset to highlight areas of potential performance improvement and train a simple machine learning algorithm to predict the delivered image quality given current atmospheric conditions. The complete dataset will be released to the public as a resource for testing new predictive control and PSF-reconstruction algorithms

Race, Slavery, and the Expression of Sexual Violence in Louisa Picquet, The Octoroon

Historically, victims of sexual violence have rarely left written accounts of their abuse, so while sexual violence has long been associated with slavery in the United States, historians have few accounts from formerly enslaved people who experienced it first-hand. Through a close reading of the narrative of Louisa Picquet, a survivor of sexual violence in Georgia and Louisiana, this article reflects on the recovery of evidence of sexual violence under slavery through amanuensis-recorded testimony, the unintended evidence of survival within the violent archive of female slavery, and the expression of “race” as an authorial device through which to demonstrate the multigenerational nature of sexual victimhood

Establishing a yard specific normal rectal temperature reference range for horses

Previously published equine temperature ranges often fail to state the population of animals or the method of temperature measurement used to establish the range. An inappropriate reference range can negatively affect the interpretation of measurements, resulting in animals being misdiagnosed. A yard specific equine rectal temperature reference range was therefore calculated. 652 rectal temperatures were collected from a population of 41 healthy adult horses, including a range of breeds aged 2-23 years old. Rectal temperature was measured at a depth of 5cm, using lubricated digital predictive thermometers. The normal rectal temperature range of horses on this yard was 36.0 – 38.0°C (90% confidence interval [CI] = 35.97–36.03°C at the lower limit, CI = 37.97–38.03°C at the upper limit). A Mann Whitney test showed significant difference between geldings and mares (Z = -1.389, p = 0.165). Spearman’s correlation showed no significant correlations between rectal temperature and ambient temperature (Rs = 0.137, p = 0.052), or rectal temperature and horse height (Rs = -0.047, p = 0.791). The upper limit of the range is lower than most previously suggested temperature ranges, which may reflect the low stress environment in which temperatures were measured; horses were housed in a familiar environment and examined and handled by familiar equine technicians. The findings of this study suggest that establishing yard specific normal temperature ranges could improve early detection of fever, and support biosecurity protocols in the face of infectious disease outbreaks. Additionally, the results suggest that existing equine temperature ranges may need reviewing

Reflections on the 'History and Historians' of the black woman's role in the community of slaves: enslaved women and intimate partner sexual violence

Taking as points of inspiration Peter Parish’s 1989 book, Slavery: History and Historians, and Angela Davis’s seminal 1971 article, “Reflections on the black woman’s role in the community of slaves,” this probes both historiographically and methodologically some of the challenges faced by historians writing about the lives of enslaved women through a case study of intimate partner violence among enslaved people in the antebellum South. Because rape and sexual assault have been defined in the past as non-consensual sexual acts supported by surviving legal evidence (generally testimony from court trials), it is hard for historians to research rape and sexual violence under slavery (especially marital rape) as there was no legal standing for the rape of enslaved women or the rape of any woman within marriage. This article suggests enslaved women recognized that black men could both be perpetrators of sexual violence and simultaneously be victims of the system of slavery. It also argues women stoically tolerated being forced into intimate relationships, sometimes even staying with “husbands” imposed upon them after emancipation