Foundations for structured programming with GADTs

GADTs are at the cutting edge of functional programming and become more widely used every day. Nevertheless, the semantic foundations underlying GADTs are not well understood. In this paper we solve this problem by showing that the standard theory of data types as carriers of initial algebras of functors can be extended from algebraic and nested data types to GADTs. We then use this observation to derive an initial algebra semantics for GADTs, thus ensuring that all of the accumulated knowledge about initial algebras can be brought to bear on them. Next, we use our initial algebra semantics for GADTs to derive expressive and principled tools — analogous to the well-known and widely-used ones for algebraic and nested data types — for reasoning about, programming with, and improving the performance of programs involving, GADTs; we christen such a collection of tools for a GADT an initial algebra package. Along the way, we give a constructive demonstration that every GADT can be reduced to one which uses only the equality GADT and existential quantification. Although other such reductions exist in the literature, ours is entirely local, is independent of any particular syntactic presentation of GADTs, and can be implemented in the host language, rather than existing solely as a metatheoretical artifact. The main technical ideas underlying our approach are (i) to modify the notion of a higher-order functor so that GADTs can be seen as carriers of initial algebras of higher-order functors, and (ii) to use left Kan extensions to trade arbitrary GADTs for simpler-but-equivalent ones for which initial algebra semantics can be derive

Indexed Induction and Coinduction, Fibrationally

This paper extends the fibrational approach to induction and coinduction pioneered by Hermida and Jacobs, and developed by the current authors, in two key directions. First, we present a dual to the sound induction rule for inductive types that we developed previously. That is, we present a sound coinduction rule for any data type arising as the carrier of the final coalgebra of a functor, thus relaxing Hermida and Jacobs' restriction to polynomial functors. To achieve this we introduce the notion of a quotient category with equality (QCE) that i) abstracts the standard notion of a fibration of relations constructed from a given fibration; and ii) plays a role in the theory of coinduction dual to that played by a comprehension category with unit (CCU) in the theory of induction. Secondly, we show that inductive and coinductive indexed types also admit sound induction and coinduction rules. Indexed data types often arise as carriers of initial algebras and final coalgebras of functors on slice categories, so we give sufficient conditions under which we can construct, from a CCU (QCE) U:E \rightarrow B, a fibration with base B/I that models indexing by I and is also a CCU (resp., QCE). We finish the paper by considering the more general case of sound induction and coinduction rules for indexed data types when the indexing is itself given by a fibration

Representations of stream processors using nested fixed points

We define representations of continuous functions on infinite streams of discrete values, both in the case of discrete-valued functions, and in the case of stream-valued functions. We define also an operation on the representations of two continuous functions between streams that yields a representation of their composite. In the case of discrete-valued functions, the representatives are well-founded (finite-path) trees of a certain kind. The underlying idea can be traced back to Brouwer's justification of bar-induction, or to Kreisel and Troelstra's elimination of choice-sequences. In the case of stream-valued functions, the representatives are non-wellfounded trees pieced together in a coinductive fashion from well-founded trees. The definition requires an alternating fixpoint construction of some ubiquity

Modularity and implementation of mathematical operational semantics

Structural operational semantics is a popular technique for specifying the meaning of programs by means of inductive clauses. One seeks syntactic restrictions on those clauses so that the resulting operational semantics is well-behaved. This approach is simple and concrete but it has some drawbacks. Turi pioneered a more abstract categorical treatment based upon the idea that operational semantics is essentially a distribution of syntax over behaviour. In this article we take Turi's approach in two new directions. Firstly, we show how to write operational semantics as modular components and how to combine such components to specify complete languages. Secondly, we show how the categorical nature of Turi's operational semantics makes it ideal for implementation in a functional programming language such as Haskell

Modularity and implementation of mathematical operational semantics

Structural operational semantics is a popular technique for specifying the meaning of programs by means of inductive clauses. One seeks syntactic restrictions on those clauses so that the resulting operational semantics is well-behaved. This approach is simple and concrete but it has some drawbacks. Turi pioneered a more abstract categorical treatment based upon the idea that operational semantics is essentially a distribution of syntax over behaviour. In this article we take Turi's approach in two new directions. Firstly, we show how to write operational semantics as modular components and how to combine such components to specify complete languages. Secondly, we show how the categorical nature of Turi's operational semantics makes it ideal for implementation in a functional programming language such as Haskell

Factors determining the pattern of the variant Creutzfeldt-Jakob disease (vCJD) epidemic in the UK.

Following the emergence of a new variant of Creutzfeldt-Jakob disease (vCJD) 6 years ago, and the gradual rise in clinical cases, there has been increased speculation regarding the overall magnitude of this epidemic in Great Britain. In this paper, we explore the epidemiological factors and uncertainties determining the scale of this epidemic in light of the most recent data on reported vCJD mortality. Our results demonstrate that, while the magnitude of the uncertainty has decreased dramatically since 1996, it is still not possible to predict with any degree of accuracy the final magnitude of this epidemic, with the 95% confidence interval for future cases being from 10 to 7000 deaths. However, short-term projections show that it is unlikely that a dramatic increase in case numbers will be observed in the next 2-5 years (95% confidence interval for 2 years: 10-80 cases, for 5 years: 10-200 cases). The results confirm significant age-dependent susceptibility/exposure to infection, with the likelihood profile demonstrating that those aged between 10 and 20 years are at highest risk of infection. We also demonstrate how projections based on onset data may be substantially biased, and explore the sensitivity of results to assumptions concerning the exposure to bovine spongiform encephalopathy (BSE) and the incubation-period distribution

Comprehensive parametric polymorphism : categorical models and type theory

This paper combines reflexive-graph-category structure for relational parametricity with fibrational models of impredicative polymorphism. To achieve this, we modify the definition of fibrational model of impredicative polymorphism by adding one further ingredient to the structure: comprehension in the sense of Lawvere. Our main result is that such comprehensive models, once further endowed with reflexive-graph-category structure, enjoy the expected consequences of parametricity. This is proved using a type-theoretic presentation of the category-theoretic structure, within which the desired consequences of parametricity are derived. The formalisation requires new techniques because equality relations are not available, and standard arguments that exploit equality need to be reworked

Proof-relevant parametricity

Parametricity is one of the foundational principles which underpin our understanding of modern programming languages. Roughly speaking, parametricity expresses the hidden invariants that programs satisfy by formalising the intuition that programs map related inputs to related outputs. Traditionally parametricity is formulated with proofirrelevant relations but programming in Type Theory requires an extension to proof-relevant relations. But then one might ask: can our proofs that polymorphic functions are parametric be parametric themselves? This paper shows how this can be done and, excitingly, our answer requires a trip into the world of higher dimensional parametricity

Antigen-driven T-cell turnover.

A mathematical model is developed to characterize the distribution of cell turnover rates within a population of T lymphocytes. Previous models of T-cell dynamics have assumed a constant uniform turnover rate; here we consider turnover in a cell pool subject to clonal proliferation in response to diverse and repeated antigenic stimulation. A basic framework is defined for T-cell proliferation in response to antigen, which explicitly describes the cell cycle during antigenic stimulation and subsequent cell division. The distribution of T-cell turnover rates is then calculated based on the history of random exposures to antigens. This distribution is found to be bimodal, with peaks in cell frequencies in the slow turnover (quiescent) and rapid turnover (activated) states. This distribution can be used to calculate the overall turnover for the cell pool, as well as individual contributions to turnover from quiescent and activated cells. The impact of heterogeneous turnover on the dynamics of CD4(+) T-cell infection by HIV is explored. We show that our model can resolve the paradox of high levels of viral replication occurring while only a small fraction of cells are infected

Generic Fibrational Induction

This paper provides an induction rule that can be used to prove properties of data structures whose types are inductive, i.e., are carriers of initial algebras of functors. Our results are semantic in nature and are inspired by Hermida and Jacobs' elegant algebraic formulation of induction for polynomial data types. Our contribution is to derive, under slightly different assumptions, a sound induction rule that is generic over all inductive types, polynomial or not. Our induction rule is generic over the kinds of properties to be proved as well: like Hermida and Jacobs, we work in a general fibrational setting and so can accommodate very general notions of properties on inductive types rather than just those of a particular syntactic form. We establish the soundness of our generic induction rule by reducing induction to iteration. We then show how our generic induction rule can be instantiated to give induction rules for the data types of rose trees, finite hereditary sets, and hyperfunctions. The first of these lies outside the scope of Hermida and Jacobs' work because it is not polynomial, and as far as we are aware, no induction rules have been known to exist for the second and third in a general fibrational framework. Our instantiation for hyperfunctions underscores the value of working in the general fibrational setting since this data type cannot be interpreted as a set.Comment: For Special Issue from CSL 201