Genetic resources collections of leafy vegetables (lettuce, spinach, chicory, artichoke, asparagus, lamb’s lettuce, rhubarb and rocket salad): composition and gaps

Lettuce, spinach and chicory are generally considered the main leafy vegetables, while a fourth group denoted by ‘minor leafy vegetables’ includes, amongst others, rocket salad, lamb’s lettuce, asparagus, artichoke and rhubarb. Except in the case of lettuce, central crop databases of leafy vegetables were lacking until recently. Here we report on the update of the international Lactuca database and the development of three new central crop databases for each of the other leafy vegetable crop groups. Requests for passport data of accessions available to the user community were addressed to all known European collection holders and to the main collection holders located outside Europe. Altogether, passport data of 17,530 accessions from a total of 129 collections were collected. The four separate databases were made available on line via a common entry page accessible at http://documents.plant.wur.nl/cgn/pgr/LVintro/. Based on a literature study, an analysis of the gene pool structure of the crops was performed and an inventory was made of the distribution areas of the species involved. The results of these surveys were related to the contents of the newly established databases in order to identify the main collection gaps. Priorities are presented for future germplasm acquisition aimed at improving the coverage of the crop gene pools in ex situ collections

Seed conservation in ex situ genebanks - genetic studies on longevity in barley

Recognizing the danger due to a permanent risk of loss of the genetic variability of cultivated plants and their wild relatives in response to changing environmental conditions and cultural practices, plant ex situ genebank collections were created since the beginning of the last century. World-wide more than 6 million accessions have been accumulated of which more than 90% are stored as seeds. Research on seed longevity was performed in barley maintained for up to 34 years in the seed store of the German ex situ genebank of the Leibniz-Institute of Plant Genetics and Crop Plant Research in Gatersleben. A high intraspecific variation was detected in those natural aged accessions. In addition three doubled haploid barley mapping populations being artificial aged were investigated to study the inheritance of seed longevity. Quantitative trait locus (QTL) mapping was based on a transcript map. Major QTLs were identified on chromosomes 2H, 5H (two) and 7H explaining a phenotypic variation of up to 54%. A sequence homology search was performed to derive the putative function of the genes linked to the QTLs

Variability of alkaloid content in Papaver somniferum L.

A total of 300 accessions of opium poppy (Papaver somniferum L., Papaveraceae) of the IPK genebank collection from nearly all over the world were cultivated under field conditions in Gatersleben for morphological and phytochemical characterisation. Altogether 35 morphological and agronomic characters were collected for all accessions. Determination of chromosome numbers with flow cytometry showed that the accessions of subspecies setigerum are tetraploid whereas all accessions of the other subspecies are diploid. Composition and content of the five main alkaloids (morphine, codeine, thebaine, papaverine and noscapine) were analysed by high performance liquid chromatography (HPLC). Total alkaloid content varied between 683.32 and 25,034.84 μg/g dry matter (first year) and 1,799.49 and 25,338.55 μg/g dry matter in the second year of cultivation. There is a highly significant correlation between total content of alkaloids and morphine in both years (r=0.926/P=0.000; r=0.918/P=0.000). In contrast, the other four main alkaloids show less or no correlation with each other or the total alkaloid content. This analysis demonstrated that the amount and composition of the main alkaloids are highly variable. Additionally, there is no important correlation between morphological characters and alkaloid content. So it is not possible to use these characters as a prediction tool of alkaloid content during breeding process

Uncovering the genetic architecture of spike related traits in bread wheat: a viable alternative to increase yield potential

Non-Peer ReviewedBased on the projected demand, further improvements in wheat grain yield are required. In this sense, exploring the genetic diversity associated with yield related traits is critical to derive superior progenies from crossing and selection. However, the possible presence of trade-off between traits must be considered to determine their relevance for improving yield potential. In this study, we determined the phenotypic and genetic relationships between twelve spike related traits and their genetic basis through an association mapping study using a 15K Infinium SNP array, characterized in a bread wheat panel. To identify potential candidate genes, regions of interest were positioned onto the newly released wheat reference genome sequence by blasting their peaking marker sequences against the IWGSC RefSeq v1.0. From all the analyzed traits, grain number per fertile spikelet (GFS) showed the highest correlation with grain number per spike (GNS), whereas there was no relationship with thousand kernel weight (TKW). As a result, significant increases in grain weight per spike (GWS) associated with higher GFS was observed. Interestingly, GFS was mostly explained by spikelet weight (SW), indicating that improvements in yield potential could be achieved through partition improving within the spike. In addition, the genetic analysis showed independent genetic control between GFS and both, GNS and TKW, suggesting the potential value of GFS as selection criterion to increase yield potential in wheat breeding programs. A total of 54 significant marker-trait associations were detected for spike related traits, including two genomic regions on 1B and 7A linked to GFS and 6 genomic regions located on 1A, 1B, 2B, 3A, 5A and 7B associated to SW. The potential candidate genes for these regions included several sugar transporter and carbohydrate-binding protein. The markers linked to GFS and SW are really promising, especially considering that due to the destructive phenotypic determination, their improvement in early breeding generations can only be made by marker-assisted selection

QTLs for salt tolerance in three different barley mapping populations 2006

Soil salinity is one of the crucial factors limiting crop production. Progression of salinisation of agriculturally arable land is mainly connected with mismanagement of water in irrigation systems, in particular under arid and semiarid climate conditions and global changes of water flow in the landscape. Selection of salt tolerant genotypes is necessary to ensure yield and to reclaim salt affected soils. The development of molecular marker(s) could facilitate the selection process. Phenotyping of mapping populations under salt stress conditions and calculation of QTLs are suitable instruments to detect markers that are responsible for tolerance/sensitivity. However, a quantitative inherited trait like salt tolerance requires a range of adaptations, with a whole host of genes interacting with each other to produce the visible phenotype

Geography of genetic structure in barley wild relative Hordeum vulgare subsp. spontaneum in Jordan

Informed collecting, conservation, monitoring and utilization of genetic diversity requires knowledge of the distribution and structure of the variation occurring in a species. Hordeum vulgare subsp. spontaneum (K. Koch) Thell., a primary wild relative of barley, is an important source of genetic diversity for barley improvement and co-occurs with the domesticate within the center of origin. We studied the current distribution of genetic diversity and population structure in H. vulgare subsp. spontaneum in Jordan and investigated whether it is correlated with either spatial or climatic variation inferred from publically available climate layers commonly used in conservation and ecogeographical studies. The genetic structure of 32 populations collected in 2012 was analyzed with 37 SSRs. Three distinct genetic clusters were identified. Populations were characterized by admixture and high allelic richness, and genetic diversity was concentrated in the northern part of the study area. Genetic structure, spatial location and climate were not correlated. This may point out a limitation in using large scale climatic data layers to predict genetic diversity, especially as it is applied to regional genetic resources collections in H. vulgare subsp. spontaneum

Prototyping of petalets for the Phase-II Upgrade of the silicon strip tracking detector of the ATLAS Experiment

In the high luminosity era of the Large Hadron Collider, the HL-LHC, the instantaneous luminosity is expected to reach unprecedented values, resulting in about 200 proton-proton interactions in a typical bunch crossing. To cope with the resultant increase in occupancy, bandwidth and radiation damage, the ATLAS Inner Detector will be replaced by an all-silicon system, the Inner Tracker (ITk). The ITk consists of a silicon pixel and a strip detector and exploits the concept of modularity. Prototyping and testing of various strip detector components has been carried out. This paper presents the developments and results obtained with reduced-size structures equivalent to those foreseen to be used in the forward region of the silicon strip detector. Referred to as petalets, these structures are built around a composite sandwich with embedded cooling pipes and electrical tapes for routing the signals and power. Detector modules built using electronic flex boards and silicon strip sensors are glued on both the front and back side surfaces of the carbon structure. Details are given on the assembly, testing and evaluation of several petalets. Measurement results of both mechanical and electrical quantities are shown. Moreover, an outlook is given for improved prototyping plans for large structures.Comment: 22 pages for submission for Journal of Instrumentatio

CarrotDiverse : understanding variation in a wild relative of carrot

Genebanks and other ex situ collections have a significant role in the conservation, management and use of crop genetic diversity, including that of crop wild relatives. Efficient management and use depends on insight into the patterning and distribution of genetic diversity as well as obtaining baseline information on phenotypic characters and traits. Wild carrot (Daucus carota L.) is the closest wild relative of cultivated carrot (Daucus carota L. subsp. sativus (Hoffm.) Arcang.), and is a potential source of useful traits for crop improvement. There are over 900 accessions of D. carota described as wild in European genebanks, however associated phenotypic and genotypic characterization data are sparse. The influence of environment on phenotype is also not well understood in this taxon, meaning that it is difficult to ascertain how data collected at different locations can be compiled and collated. We present initial results of CarrotDiverse, a collaborative project in which wild D. carota accessions are undergoing detailed phenotypic and morphological characterization in parallel at three sites of varying latitude across Europe located in Portugal, France and Sweden. This will allow us to understand which traits are affected by environmental variables. Basic phenotypic information is being collected on a further 150 accessions. Furthermore, resistance screening to Alternaria species and polyacetylene profiling will be included in the evaluation. A Genotyping by Sequencing approach will be used to generate knowledge about genetic background and trait associations. The project will result in a significant data set which will facilitate the use of crop wild relatives in carrot breeding and improvement