Media and the Folk

Historiography and Japanese Consciousness of Values and Norms, プリンストン, 2002

Flow-cytometric detection of changes in the physiological state of E. coli expressing a heterologous membrane protein during carbon-limited fedbatch cultivation

The key to optimizing productivity during industrial fermentations is the ability to rapidly monitor and interpret the physiological state of single microbial cells in a population and to recognize and characterize different sub-populations. Here, a flow cytometry-based method for the reproducible detection of changes in membrane function and/or structure of recombinant E. coli JM101 (pSPZ3) expressing xylene monooxygenase (XMO), was developed. XMO expression led to compromised but not permeabilized cell membranes. This was deduced from the fact that recombinant cells only stained with ethidium bromide (EB) and not with propidium iodide (PI). During the glucose-limited fedbatch cultivation, an increase from 25% to 95% of EB-stained cells was observed, occurring between 2 and 5 h after induction. Control experiments confirmed that this increase was due to the recombinant protein production and not caused by any possible effects of varying substrate availability, high cell density, plasmid replication or the presence of the inducing agent. We hypothesize that the integration of the recombinant protein into the cell membrane physically disrupted the functionality of the efflux pumps, thus resulting in EB-staining of the recombinant cells. This method enabled us to detect changes in the physiological state of single cells 2-4 h before other indications of partial cell damage, such as unbalanced growth, acetate accumulation and an increased CO(2) production rate, were observed. This method therefore shows promise with respect to the further development of an early-warning system to prevent sudden productivity decreases in processes with recombinant E. coli expressing heterologous membrane proteins

Environmental changes and carbon cycle perturbations at the Triassic–Jurassic boundary in northern Switzerland

The Triassic–Jurassic boundary is characterized by strong perturbations of the global carbon cycle, triggered by massive volcanic eruptions related to the onset of the Central Atlantic Magmatic Province. These perturbations are recorded by negative carbon isotope excursions (CIEs) which have been reported worldwide. In this study, Triassic–Jurassic boundary sections from the southern margin of the Central European Basin (CEB) located in northern Switzerland are analyzed for organic carbon and nitrogen isotopes in combination with particulate organic matter (POM) analyses. We reconstruct the evolution of the depositional environment from Late Triassic to Early Jurassic in northern Switzerland and show that observed negative shifts in d13C of the total organic carbon (d13CTOC) in the sediment are only subordinately influenced by varying organic matter (OM) composition and primarily reflect global changes in the carbon cycle. Based on palynology and the stratigraphic positions of isotopic shifts, the d13CTOC record of the studied sections is correlated with the GSSP section at Kuhjoch (Tethyan realm) in Austria and with the St. Audrie’s Bay section (CEB realm) in southwest England. We also show that in contrast to POM analyses the applicability of organic carbon/total nitrogen (OC/TN) atomic ratios and stable isotopes of total nitrogen (d15NTN) for detecting changes in source of OM is limited in marginal depositional environments with frequent changes in lithology and OM contents. Keywords Triassic–Jurassic boundary Northern Switzerland Stable carbon and nitrogen isotope geochemistry Sedimentology Palynology Chemostratigraph

Compact and lightweight mid-infrared laser spectrometer for balloon-borne water vapor measurements in the UTLS

We describe the development, characterization, and first field deployments of a quantum cascade laser direct absorption spectrometer (QCLAS) for water vapor measurements in the upper troposphere and lower stratosphere (UTLS). The instrument is sufficiently small (30×23×11 cm3) and lightweight (3.9 kg) to be carried by meteorological balloons and used for frequent soundings in the UTLS. The spectrometer is a fully independent system, operating autonomously for the duration of a balloon flight. To achieve the required robustness, while satisfying stringent mass limitations, the concepts for optics and electronics have been fundamentally reconsidered compared to laboratory-based spectrometers. A significant enhancement of the mechanical and optical stability is achieved by integrating a newly designed segmented circular multipass cell which allows for 6 m optical path length in a very compact fashion. The H2O volume mixing ratio is retrieved by calibration-free evaluation of the spectral data, i.e., only relying on SI-traceable measurements and absorption line parameters. The open-path design reduces the risk of contamination and allows for fast response and thus high vertical resolution. Laboratory-based characterization experiments show an agreement within 2 % of reference measurements and a precision of 0.1 % under conditions comparable to the UTLS. The instrument successfully performed two balloon-borne test flights up to 28 km altitude. In the troposphere, the retrieved spectroscopic data show an excellent agreement with the accompanying measurements by a frost point hygrometer (CFH). At higher altitude, the quality of the spectral data remained unchanged, but outgassed water vapor within the instrument enclosure was hindering an accurate measurement of the atmospheric water vapor. Despite this limitation, these test flights demonstrated the operation of a compact laser spectrometer in the UTLS aboard a low-volume meteorological balloon, opening the perspective for future highly resolved, accurate, and cost-efficient soundings.ISSN:1867-1381ISSN:1867-854

Clonal analysis of TET2 and JAK2 mutations suggests that TET2 can be a late event in the progression of myeloproliferative neoplasms

Somatic mutations in TET2 occur in patients with myeloproliferative neoplasms and other hematologic malignancies. It has been suggested that TET2 is a tumor suppressor gene and mutations in TET2 precede the acquisition of JAK2-V617F. To examine the order of events, we performed colony assays and genotyped TET2 and JAK2 in individual colonies. In 4 of 8 myeloproliferative neoplasm patients, we found that some colonies with mutated TET2 carried wild-type JAK2, whereas others were JAK2-V617F positive, indicating that TET2 occurred before JAK2-V617F. One of these patients carried a germline TET2 mutation. However, in 2 other patients, we obtained data compatible with the opposite order of events, with JAK2 exon 12 mutation preceding TET2 mutation in one case. Finally, in 2 of 8 patients, the TET2 and JAK2-V617F mutations defined 2 separate clones. The lack of a strict temporal order of occurrence makes it unlikely that mutations in TET2 represent a predisposing event for acquiring mutations in JAK2

Cholesterol and bile acids regulate xenosensor signaling in drug-mediated induction of cytochromes P450

Cytochromes P450 (CYP) constitute the major enzymatic system for metabolism of xenobiotics. Here we demonstrate that transcriptional activation of CYPs by the drug-sensing nuclear receptors pregnane X receptor, constitutive androstane receptor, and the chicken xenobiotic receptor (CXR) can be modulated by endogenous cholesterol and bile acids. Bile acids induce the chicken drug-activated CYP2H1 via CXR, whereas the hydroxylated metabolites of bile acids and oxysterols inhibit drug induction. The cholesterol-sensing liver X receptor competes with CXR, pregnane X receptor, or constitutive androstane receptor for regulation of drug-responsive enhancers from chicken CYP2H1, human CYP3A4, or human CYP2B6, respectively. Thus, not only cholesterol 7 alpha-hydroxylase (CYP7A1), but also drug-inducible CYPs, are diametrically affected by these receptors. Our findings reveal new insights into the increasingly complex network of nuclear receptors regulating lipid homeostasis and drug metabolism