Theoretical study of electronic damage in single particle imaging experiments at XFELs for pulse durations 0.1 - 10 fs

X-ray free-electron lasers (XFELs) may allow to employ the single particle imaging (SPI) method to determine the structure of macromolecules that do not form stable crystals. Ultrashort pulses of 10 fs and less allow to outrun complete disintegration by Coulomb explosion and minimize radiation damage due to nuclear motion, but electronic damage is still present. The major contribution to the electronic damage comes from the plasma generated in the sample that is strongly dependent on the amount of Auger ionization. Since the Auger process has a characteristic time scale on the order of femtoseconds, one may expect that its contribution will be significantly reduced for attosecond pulses. Here, we study the effect of electronic damage on the SPI at pulse durations from 0.1 fs to 10 fs and in a large range of XFEL fluences to determine optimal conditions for imaging of biological samples. We analyzed the contribution of different electronic excitation processes and found that at fluences higher than $10^{13}$-$10^{15}$ photons/$\mu$m$^2$ (depending on the photon energy and pulse duration) the diffracted signal saturates and does not increase further. A significant gain in the signal is obtained by reducing the pulse duration from 10 fs to 1 fs. Pulses below 1 fs duration do not give a significant gain in the scattering signal in comparison with 1 fs pulses. We also study the limits imposed on SPI by Compton scattering.Comment: 35 pages, 9 figures, 1 table, 2 appendixes, 45 reference

Influence of the initial- and final-state configuration interaction on the anisotropy of the resonant Auger decay of Kr 3d⁻¹5p and Xe 4d⁻¹6p states

The anisotropy of resonant Auger decay of photo-excited Kr 3d−13/2,5/25p and Xe 4d−13/2,5/26p states has been studied by multiconfiguration Dirac-Fock method. The calculations account for the configuration interaction both in the initial and in the final states of the Auger decay. For the nonresolved nd−1(n+2)p(J=1) resonances (n=3 for Kr and n=4 for Xe) the average intensities and anisotropies of Auger lines were calculated by weighing each partial rate by the pertinent Dirac-Fock photoexcitation probabilities. Our results show that, in addition to the initial- and final-state correlation, both the relaxation and the exchange interaction have a substantial effect on the anisotropy of these Auger spectra. For most Auger lines there is good agreement between our calculated β parameters and experimental values for the Kr and Xe nd−15/2(n+2)p photoexcitation resonances; there is also satisfactory agreement for the Kr 3d−13/25p and Xe 4d−13/26p resonant Auger spectra. However, the remaining notable discrepancies between theory and experiment indicate that important correlation effects are still omitted in our calculations. Discrepancies between different experimental results stress the need for further improvements on the experimental side

Impact of ultrafast electronic damage in single particle x-ray imaging experiments

In single particle coherent x-ray diffraction imaging experiments, performed at x-ray free-electron lasers (XFELs), samples are exposed to intense x-ray pulses to obtain single-shot diffraction patterns. The high intensity induces electronic dynamics on the femtosecond time scale in the system, which can reduce the contrast of the obtained diffraction patterns and adds an isotropic background. We quantify the degradation of the diffraction pattern from ultrafast electronic damage by performing simulations on a biological sample exposed to x-ray pulses with different parameters. We find that the contrast is substantially reduced and the background is considerably strong only if almost all electrons are removed from their parent atoms. This happens at fluences of at least one order of magnitude larger than provided at currently available XFEL sources.Comment: 15 pages, 3 figures submitted to PR

Coherence and correlation in the anisotropy of Ne KL-LLL satellite Auger decay

The energies, intensities, and angular anisotropies of the Ne KL-LLL satellite Auger lines have been studied by the multiconfiguration Dirac-Fock method. In addition to the initial- and final-state correlation effects we have studied the influence of the quantum beat effect on this Auger spectrum. Since the energy splitting of the Ne 1s−12p−13P multiplet is much smaller than the lifetime broadening, the coherent excitation of these initial states by the in time and space localized electromagnetic pulse of the projectile has a drastic effect on the angular distribution of Auger electrons. To analyze this coherence effect we have generalized the theory of the angular distribution of Auger electrons to the case of coherent excitation of partially overlapping initial states. The results of our calculations are in good overall agreement with experiment. However, for a quantitative study of the influence of the coherence and the initial spin state on the anisotropy of these Auger lines new measurements with lower error limits are necessary

In Place/Out of Place Assignment

This Geography assignment, ideal for Political Geography, Cultural Geography, Urban Geography, and so forth (and of course other related disciplines like Anthropology and Sociology), undergraduate courses, explores the concepts of in place and out of place. Based on a reading of the introduction of Tim Cresswell\u27s 1996 book In Place/out of Place Geography, Ideology, and Transgression, this assignment is a great way to get students to think about these issues and connect them to their own experiences