Discoloration of Polyvinyl Chloride (PVC) Tape as a Proxy for Water-Table Depth in Peatlands: Validation and Assessment of Seasonal Variability

Summary 1. Discoloration of polyvinyl chloride (PVC) tape has been used in peatland ecological and hydrological studies as an inexpensive way to monitor changes in water-table depth and reducing conditions. 2. We investigated the relationship between depth of PVC tape discoloration and measured water-table depth at monthly time steps during the growing season within nine kettle peatlands of northern Wisconsin. Our specific objectives were to: (1) determine if PVC discoloration is an accurate method of inferring water-table depth in Sphagnum -dominated kettle peatlands of the region; (2) assess seasonal variability in the accuracy of the method; and (3) determine if systematic differences in accuracy occurred among microhabitats, PVC tape colour and peatlands. 3. Our results indicated that PVC tape discoloration can be used to describe gradients of water-table depth in kettle peatlands. However, accuracy differed among the peatlands studied, and was systematically biased in early spring and late summer/autumn. Regardless of the month when the tape was installed, the highest elevations of PVC tape discoloration showed the strongest correlation with midsummer (around July) water-table depth and average water-table depth during the growing season. 4. The PVC tape discoloration method should be used cautiously when precise estimates are needed of seasonal changes in the water-table

Inflection point inflation: WMAP constraints and a solution to the fine-tuning problem

We consider observational constraints and fine-tuning issues in a renormalizable model of inflection point inflation, with two independent parameters. We derive constraints on the parameter space of this model arising from the WMAP 7-year power spectrum. It has previously been shown that it is possible to successfully embed this potential in the MSSM. Unfortunately, to do this requires severe fine-tuning. We address this issue by introducing a hybrid field to dynamically uplift the potential with a subsequent smooth phase transition to end inflation at the necessary point. Large parameter regions exist where this drastically reduces the fine-tuning required without ruining the viability of the model. A side effect of this mechanism is that it increases the width of the slow-roll region of the potential, thus also alleviating the problem of the fine-tuning of initial conditions. The MSSM embedding we study has been previously shown to be able to explain the smallness of the neutrino masses. The hybrid transition does not spoil this feature as there exist parameter regions where the fine-tuning parameter is as large as $10^{-1}$ and the neutrino masses remain small.Comment: 12 pages, 2 figures, JCAP style. Version accepted for publication in JCAP. Modifications made to improve readability, as requested by the referee; results and conclusions unchanged. References update

Tuned MSSM Higgses as an inflaton

We consider the possibility that the vacuum energy density of the MSSM (Minimal Supersymmetric Standard Model) flat direction condensate involving the Higgses H_1 and H_2 is responsible for inflation. We also discuss how the finely tuned Higgs potential at high vacuum expectation values can realize {\it cosmologically} flat direction along which it can generate the observed density perturbations, and after the end of inflation -- the coherent oscillations of the Higgses reheat the universe with all the observed degrees of freedom, without causing any problem for the electroweak phase transition.Comment: 6 pages, 5 figure

Fine tuning and the ratio of tensor to scalar density fluctuations from cosmological inflation

The form of the inflationary potential is severely restricted if one requires that it be natural in the technical sense, i.e. terms of unrelated origin are not required to be correlated. We determine the constraints on observables that are implied in such natural inflationary models, in particular on $r$, the ratio of tensor to scalar perturbations. We find that the naturalness constraint does not require $r$ to be lare enough to be detectable by the forthcoming searches for B-mode polarisation in CMB maps. We show also that the value of $r$ is a sensitive discriminator between inflationary models.Comment: 8 pages LaTeX; clarifications and a reference added; to appear in JCA

Adiposity has differing associations with incident coronary heart disease and mortality in the Scottish population: cross-sectional surveys with follow-up

Objective: Investigation of the association of excess adiposity with three different outcomes: all-cause mortality, coronary heart disease (CHD) mortality and incident CHD. Design: Cross-sectional surveys linked to hospital admissions and death records. Subjects: 19 329 adults (aged 18–86 years) from a representative sample of the Scottish population. Measurements: Gender-stratified Cox proportional hazards models were used to estimate hazard ratios (HRs) for all-cause mortality, CHD mortality and incident CHD. Separate models incorporating the anthropometric measurements body mass index (BMI), waist circumference (WC) or waist–hip ratio (WHR) were created adjusted for age, year of survey, smoking status and alcohol consumption. Results: For both genders, BMI-defined obesity (greater than or equal to30 kg m−2) was not associated with either an increased risk of all-cause mortality or CHD mortality. However, there was an increased risk of incident CHD among the obese men (hazard ratio (HR)=1.78; 95% confidence interval=1.37–2.31) and obese women (HR=1.93; 95% confidence interval=1.44–2.59). There was a similar pattern for WC with regard to the three outcomes; for incident CHD, the HR=1.70 (1.35–2.14) for men and 1.71 (1.28–2.29) for women in the highest WC category (men greater than or equal to102 cm, women greater than or equal to88 cm), synonymous with abdominal obesity. For men, the highest category of WHR (greater than or equal to1.0) was associated with an increased risk of all-cause mortality (1.29; 1.04–1.60) and incident CHD (1.55; 1.19–2.01). Among women with a high WHR (greater than or equal to0.85) there was an increased risk of all outcomes: all-cause mortality (1.56; 1.26–1.94), CHD mortality (2.49; 1.36–4.56) and incident CHD (1.76; 1.31–2.38). Conclusions: In this study excess adiposity was associated with an increased risk of incident CHD but not necessarily death. One possibility is that modern medical intervention has contributed to improved survival of first CHD events. The future health burden of increased obesity levels may manifest as an increase in the prevalence of individuals living with CHD and its consequences

Monocytes regulate the mechanism of T-cell death by inducing Fas-mediated apoptosis during bacterial infection.

Monocytes and T-cells are critical to the host response to acute bacterial infection but monocytes are primarily viewed as amplifying the inflammatory signal. The mechanisms of cell death regulating T-cell numbers at sites of infection are incompletely characterized. T-cell death in cultures of peripheral blood mononuclear cells (PBMC) showed 'classic' features of apoptosis following exposure to pneumococci. Conversely, purified CD3(+) T-cells cultured with pneumococci demonstrated necrosis with membrane permeabilization. The death of purified CD3(+) T-cells was not inhibited by necrostatin, but required the bacterial toxin pneumolysin. Apoptosis of CD3(+) T-cells in PBMC cultures required 'classical' CD14(+) monocytes, which enhanced T-cell activation. CD3(+) T-cell death was enhanced in HIV-seropositive individuals. Monocyte-mediated CD3(+) T-cell apoptotic death was Fas-dependent both in vitro and in vivo. In the early stages of the T-cell dependent host response to pneumococci reduced Fas ligand mediated T-cell apoptosis was associated with decreased bacterial clearance in the lung and increased bacteremia. In summary monocytes converted pathogen-associated necrosis into Fas-dependent apoptosis and regulated levels of activated T-cells at sites of acute bacterial infection. These changes were associated with enhanced bacterial clearance in the lung and reduced levels of invasive pneumococcal disease

Sampling Local Fungal Diversity in an Undergraduate Laboratory using DNA Barcoding

Traditional methods for fungal species identification require diagnostic morphological characters and are often limited by the availability of fresh fruiting bodies and local identification resources. DNA barcoding offers an additional method of species identification and is rapidly developing as a critical tool in fungal taxonomy. As an exercise in an undergraduate biology course, we identified 9 specimens collected from the Hendrix College campus in Conway, Arkansas, USA to the genus or species level using morphology. We report that DNA barcoding targeting the internal transcribed spacer (ITS) region supported several of our taxonomic determinations and we were able to contribute 5 ITS sequences to GenBank that were supported by vouchered collection information. We suggest that small-scale barcoding projects are possible and that they have value for documenting fungal diversity

Pectic oligosaccharide structure-function relationships: prebiotics, inhibitors of Escherichia coli O157:H7 adhesion and reduction of Shiga toxin cytotoxicity in HT29 cells

Shiga toxin (Stx)-producing, food-contaminating Escherichia coli (STEC) is a major health concern. Plant-derived pectin and pectic-oligosaccharides (POS) have been considered as prebiotics and for the protection of humans from Stx. Of five structurally different citrus pectic samples, POS1, POS2 and modified citrus pectin 1 (MCP1) were bifidogenic with similar fermentabilities in human faecal cultures and arabinose-rich POS2 had the greatest prebiotic potential. Pectic oligosaccharides also enhanced lactobacilli growth during mixed batch faecal fermentation. We demonstrated that all pectic substrates were anti-adhesive for E. coli O157:H7 binding to human HT29 cells. Lower molecular weight and deesterification enhanced the anti-adhesive activity. We showed that all pectic samples reduced Stx2 cytotoxicity in HT29 cells, as measured by the reduction of human rRNA depurination detected by our novel TaqMan-based RT-qPCR assay, with POS1 performing the best. POS1 competes with Stx2 binding to the Gb3 receptor based on ELISA results, underlining the POS anti-STEC properties