Extraction and Visualization of Orientation Data from Virtual Geologic Surfaces with MATLAB®

High-resolution visualization of surfaces of geologic interest, at a multitude of scales, using 3D point cloud technologies provides an opportunity to analyze spatial relationships of surfaces using orientation data. We present a MATLAB® script that produces planar geologic attitude data (e.g., strike, dip, and dip-direction data) from 3D datasets (e.g., point clouds, 3D scanning). The method utilizes Cartesian coordinates of triangular planar surfaces and converts them into matrices of conventional geologic attitude data. Spatial relationships among data points can be investigated, using polar tangent diagrams, stereographic analysis, or geologic curvature analysis. We utilize this script to create synthetic graphical plots (e.g., stereograms, tangent diagrams) from geomechanically realistic, virtual, folded surfaces produced by dynamic modeling. Synthetic graphical diagrams are of considerable usefulness in interpreting graphical plots (e.g., stereograms) of attitude data from natural folded rock surfaces, particularly in locations with poor exposure.This script outputs attitude data (strike, dip, and dip direction) in a spreadsheet and as a text file for use in other visualization software.A tangent diagram is created and displayed in this script for rapid visualization and fold shape assessment. The MATLAB script is readily modified to accept multiple data formats for input (e.g., MATLAB variables, *.csv files, etc.) and output (e.g., *.csv files, *.txt files, etc.)

Re-thinking the coronavirus pandemic as a policy punctuation: COVID-19 as a path-clearing policy accelerator

This article joins with others in this special issue to examine the evolution of our understanding of how the coronavirus disease (COVID)-19 pandemic impacted policy ideas and routines across a wide variety of sectors of government activity. Did policy ideas and routines transform as a result of the pandemic or were they merely a continuation of the status quo ante? If they did transform, are the transformations temporary in nature or likely to lead to significant, deep and permanent reform to existing policy paths and trajectories? As this article sets out, the literature on policy punctuations has evolved and helps us understand the impact of COVID-19 on policy-making but tends to conflate several distinct aspects of path trajectories and deviations under the general concept of “critical junctures” which muddy reflections and findings. Once the different possible types of punctuations have been clarified, however, the result is a set of concepts related to path creation and disruption—especially that of “path clearing”—which are better able to provide an explanation of the kinds of policy change to be expected to result from the impact of events such as the 2019 coronavirus pandemi

Magma Traps and Driving Pressure: Consequences for Pluton Shape and Emplacement in an Extensional Regime

The level of emplacement and final form of felsic and mafic igneous rocks of the Wichita Mountains Igneous Province, southwestern Oklahoma, U.S.A. Are discussed in light of magma driving pressure, lithostatic load, and crustal magma traps. Deposition of voluminous A-type rhyolites upon an eroded gabbroic substrate formed a subhorizontal strength anisotropy that acted as a crustal magma trap for subsequent rising felsic and mafic magma. Intruded along this crustal magma trap are the A-type sheet granites (length/thickness 100:1) of the Wichita Granite Group, of which the Mount Scott Granite sheet is typical, and smaller plutons of biotite bearing Roosevelt Gabbro. In marked contrast to the subhorizontal granite sheets, the gabbro plutons form more equant stocks with flat roofs and steep side walls. Late Diabase dikes cross-cut all other units, but accompanying basaltic flows are extremely rare in the volcanic pile. Based on magmastatic calculations, we draw the following conclusions concerning the level of emplacement and the shape of these intrusions. (1) Magma can rise to a depth at which the magma driving pressure becomes negligible. Magma that maintains a positive driving pressure at the surface has the potential to erupt. (2) Magma ascent may be arrested at a deeper level in the crust by a subhorizontal strength anisotropy (i.e. crustal magma trap) if the magma driving pressure is greater than or equal to the lithostatic load at the depth of the subhorizontal strength anisotropy. (3) Subhorizontal sheet-intrusions form along crustal magma traps when the magma driving pressure greatly exceeds the lithostatic load. under such conditions, the magma driving pressure is sufficent to lift the overburden to create the necessary space for the intrusion. (4) Thicker steep-sided stocks or batholiths, with flat roofs, form at crustal magma traps when the magma driving pressure approximates that of the lithostatic load. under these conditions, the necessary space for the intrusion must be created by other mechanisms (e.g. stoping). (5) Subvertical sheets (i.e. dikes) form when the magma driving pressure is less than the lithostatic load at the level of emplacement

Natrolitite, an Unusual Rock -- Occurrence and Petrographic and Geochemical Characteristics (Eastern Turkey)

Very unusual rocks consisting of natrolite (\u3e95 vol.%) ± pargasite (\u3c5 vol.%) and rare albite (\u3c1 vol. %) have been discovered in the Kop mountain range, eastern Turkey. We propose to call these rocks \u27natrolitite\u27 and \u27pargasite natrolitite\u27. They were produced by Na Si metasomatism of dikes and stocks of diorite through replacement of the intermediate primary igneous plagioclase to produce natrolite. The metasomatic alteration produced concentric elliptical zones characterized by distinct mineral assemblages centered on intrusions of diorite. The Central Zone 1 consists of variably albitized diorite with preserved magmatic textures (albite ± andesine ± pargasite ± quartz). Transition Zone 2 comprises natrolite-bearing diorite (natrolite ± albite ± andesine ± pargasite ± calcite ± quartz). Marginal Zone 3 is a rock made up almost entirely of natrolite (natrolite ± pargasite ± albite ± calcite ± chlorite). Outer Zone 4 occurs along the boundary between the natrolitite and the surrounding serpentinite and consists of listvenite, a rock which comprises magnesite, quartz, calcite, mica, talc, and hematite, indicating a role for CO2 in the metasomatic reactions, consistent with the presence of calcite in the alteration zones. Zone 5 consists essentially of brecciated serpentinite with numerous hydrothermal quartz veins and calcite veins. Whole-rock compositions document an increase in Na2O, Al2O3, and H2O from the core (central zone) to the margin while CaO, MgO, and SiO2 decrease. Plagioclase abundance and composition also varies outwards from the central core rocks where it occurs as a primary magmatic phase (~95 vol.% An41-38) to the alteration zones (\u3c5 vol.% An32-37) due to partial to complete replacement of plagioclase by natrolite with or without rare albite. The natrolites exhibit little variation in Si/Al ratios, ranging between 1.45 and 1.61, and are similar in composition to those reported in the literature. Accompanying pargasitic amphibole also becomes progressively more sodic in composition from the core rocks to the marginal zone rocks. Our analysis indicates that albitization preceded the formation of natrolite and that the formation of natrolite, instead of other more typical alteration minerals (e.g. analcime and paragonite), reflects Na metasomatism at lower chemical potentials for Al2O3 and SiO2. Potential sources of Na could be hypersaline brines or leaching of country rocks, such as trondhiemites. The fluids were driven in hydrothermal convection cells set up by the intrusion of the diorites

Timing of Deformation along the Iron Springs Thrust, Southern Sevier Fold-and-Thrust Belt, Utah: Evidence for an Extensive Thrusting Event in the mid-Cretaceous

The temporal and spatial distribution of strain associated with the Sevier orogeny in western North America is significantly different in the southern end of the belt, at the latitude of Las Vegas, Nevada, than farther to the north at the latitude of Salt Lake City, Utah. Reasons for these differences have been speculative as a lack of temporal constraints on thrusting in the intervening region hindered along-strike correlation across the belt. We determined a crystallization age of 100.18 ± 0.04 Ma for zircons extracted from a recently recognized dacite lapilli ash-fall tuff near the base of the synorogenic Iron Springs Formation. We propose the name “Three Peaks Tuff Member” for this unit, and identify a type stratigraphic section on the western flank of the “Three Peaks,” a topographic landmark in Iron County, Utah. Field relationships and this age constrain movement on the Iron Springs thrust and the end of the sub-Cretaceous unconformity in the critical intervening area to latest Albian/earliest Cenomanian. Movement on the Iron Springs thrust was synchronous with movement on multiple Sevier thrusts at ~100 Ma, indicating that the mid-Cretaceous was a period of extensive thrust-fault movement. This mid-Cretaceous thrusting event coincided with a period of global plate reorganization and increased convergence, and hence an increased subduction rate for the Farallon Plate beneath North America. The accelerated subduction contributed to a Cordilleran arc flare-up event and steepening of the orogenic wedge, which triggered widespread thrusting across the retroarc Sevier deformation belts. Additionally, based on temporal constraints and the strong spatial connection of mid-Cretaceous thrusts to lineaments interpreted as pre-orogenic transform faults, we suggest that temporal and spatial variations along the strike of the orogenic belt reflect tectonic inheritance of basement structures associated with the edge of the rifted Precambrian craton

Fault Growth and Propagation During Incipient Continental Rifting: Insights from a Combined Aeromagnetic and Shuttle Radar Topography Mission Digital Elevation Model Investigation of the Okavango Rift Zone, Northwest Botswana

Digital Elevation Models (DEM) extracted from the Shuttle Radar Topography Mission (SRTM) data and high-resolution aeromagnetic data are used to characterize the growth and propagation of faults associated with the early stages of continental extension in the Okavango Rift Zone (ORZ), northwest Botswana. Significant differences in the height of fault scarps and the throws across the faults in the basement indicate extended fault histories accompanied by sediment accumulation within the rift graben. Faults in the center of the rift either lack topographic expressions or are interpreted to have become inactive, or have large throws and small scarp heights indicating waning activity. Faults on the outer margins of the rift exhibit either (1) large throws or significant scarp heights and are considered older and active or (2) throws and scarp heights that are in closer agreement and are considered young and active. Fault linkages between major fault systems through a process of fault piracy have combined to establish an immature border fault for the ORZ. Thus, in addition to growing in length (by along-axis linkage of segments), the rift is also growing in width (by transferring motion to younger faults along the outer margins while abandoning older faults in the middle). Finally, utilization of preexisting zones of weakness allowed the development of very long faults (\u3e100 km) at a very early stage of continental rifting, explaining the apparent paradox between the fault length versus throw for this young rift. This study clearly demonstrates that the integration of the SRTM DEM and aeromagnetic data provides a 3-D view of the faults and fault systems, providing new insight into fault growth and propagation during the nascent stages of continental rifting

Characteristics of Mantle Fabrics beneath the South-Central United States: Constraints from Shear-Wave Splitting Measurements

New shear-wave splitting measurements at permanent broadband seismic stations in the south-central United States reveal the orientation and degree of polarization of mantle fabrics, and provide constraints on models for the formation of these fabrics. For stations on the stable North American craton, correspondence between observed polarization direction of the fast wave and the trend of Proterozoic and Paleozoic structures associated with rifts and orogenic belts implies a lithospheric origin for the observed anisotropy. The largest splitting times (up to 1.6 s) are observed at stations located in the ocean-continent transition zone, in which the fast directions are parallel to the Gulf of Mexico continental margin. The parallelism and the geometry of the keel of the craton beneath the study area suggest that asthenospheric flow around the keel of the North American craton, lithospheric fabrics developed during Mesozoic rifting, or a combination of these factors are responsible for the observed anisotropy on stations above the transitional crust

Staphylococcus aureus bacteremia in pediatric patients: Uncovering a rural health challenge

BACKGROUND: METHODS: To investigate factors influencing RESULTS: Of 251 patients, 69 (27%) were from rural areas; 28 (11%) were initially admitted to an OSH. Treatment failure occurred in 39 (16%) patients. Patients from rural areas were more likely to be infected with methicillin-resistant CONCLUSIONS: Children from rural areas face barriers to specialized health care. These challenges may contribute to severe illness and worse outcomes among children wit

Antimicrobial susceptibility profiles of Staphylococcus aureus isolates recovered from humans, environmental surfaces, and companion animals in households of children with community-onset methicillin-resistant S. aureus infections

Our objective was to determine the antibiotic susceptibility profiles of Staphylococcus aureus isolates recovered from 110 households of children with community-onset methicillin-resistant S. aureus (MRSA) infections. Cultures were obtained from household members, household objects, and dogs and cats, yielding 1,633 S. aureus isolates. The S. aureus isolates were heterogeneous, although more than half were methicillin resistant. The highest proportion of MRSA was found in bathrooms. The majority of isolates were susceptible to antibiotics prescribed in outpatient settings

Effect of Selenium Nanoparticle Size on IL-6 Detection Sensitivity in a Lateral Flow Device

Sepsis is the body’s response to an infection. Existing diagnostic testing equipment is not available in primary care settings and requires long waiting times. Lateral flow devices (LFDs) could be employed in point-of-care (POC) settings for sepsis detection; however, they currently lack the required sensitivity. Herein, LFDs are constructed using 150–310 nm sized selenium nanoparticles (SeNPs) and are compared to commercial 40 nm gold nanoparticles (AuNPs) for the detection of the sepsis biomarker interleukin-6 (IL-6). Both 310 and 150 nm SeNPs reported a lower limit of detection (LOD) than 40 nm AuNPs (0.1 ng/mL compared to 1 ng/mL), although at the cost of test line visual intensity. This is to our knowledge the first use of larger SeNPs (>100 nm) in LFDs and the first comparison of the effect of the size of SeNPs on assay sensitivity in this context. The results herein demonstrate that large SeNPs are viable alternatives to existing commercial labels, with the potential for higher sensitivity than standard 40 nm AuNPs