Managing Spent Mushroom Compost

End of Project ReportThis project addressed how to manage spent mushroom compost (SMC), an issue of critical importance to the continued development of the Irish mushroom industry. The most important aim of the project was to devise a feasible strategy for the management of this material on an industry wide basis. There were two main components of the project, which were conducted in parallel. One analysed the structure of the mushroom industry and the logistics of handling, transporting and processing SMC. The other studied the agronomic properties of SMC in an effort to develop improved guidelines on the best use of SMC in crop production. Our analysis of the SMC management problem led us to conclude that a centralised approach should be taken when developing the solution strategy. The model solution that was formulated is based on the establishment of centrally located depots for SMC collection, temporary storage and possible processing. This approach facilitates a variety of environmentally acceptable SMC end uses ranging from land application to incineration. We examined a variety of possible end uses for SMC, including its use as an alternative fuel. In the immediate future, we believe the predominant end use for SMC will be as an organic manure for field crop production and as a soil conditioner in the landscaping industry. Uses of this type are in line with both Irish and EU legislation regarding waste management. Our analysis suggests that tillage and horticulture offer the best promise for realising the beneficial properties of SMC. We have tested SMC on field crops such as winter and spring wheat and potatoes and on glasshouse crops such as tomatoes. These experiments have shown that SMC increases soil organic matter and improves soil structure. SMC is a very effective source of K and P and also provides trace elements. It makes a contribution to N nutrition but most of the N does not become available to the crop in the first year. For best results therefore, supplementary N must be applied. Overall, our results indicate that SMC can be used with beneficial effects in field crop production. The mushroom industry should move forward with establishing centralised SMC handling facilities to enable the efficient collection, temporary storage, further processing and transportation of SMC to end users. An education and awareness campaign should be conducted amongst farmers, in areas removed from mushroom production, to introduce them to the benefits of SMC and ways to effectively utilise this material.Department of Agriculture, Food and the MarineEuropean Union Structural Funds (EAGGF

Combining Information from Two Surveys to Estimate County-Level Prevalence Rates of Cancer Risk Factors and Screening

Cancer surveillance requires estimates of the prevalence of cancer risk factors and screening for small areas such as counties. Two popular data sources are the Behavioral Risk Factor Surveillance System (BRFSS), a telephone survey conducted by state agencies, and the National Health Interview Survey (NHIS), an area probability sample survey conducted through face-to-face interviews. Both data sources have advantages and disadvantages. The BRFSS is a larger survey, and almost every county is included in the survey; but it has lower response rates as is typical with telephone surveys, and it does not include subjects who live in households with no telephones. On the other hand, the NHIS is a smaller survey, with the majority of counties not included; but it includes both telephone and non-telephone households and has higher response rates. A preliminary analysis shows that the distributions of cancer screening and risk factors are different for telephone and non-telephone households. Thus, information from the two surveys may be combined to address both nonresponse and noncoverage errors. A hierarchical Bayesian approach that combines information from both surveys is used to construct county-level estimates. The proposed model incorporates potential noncoverage and nonresponse biases in the BRFSS as well as complex sample design features of both surveys. A Markov Chain Monte Carlo method is used to simulate draws from the joint posterior distribution of unknown quantities in the model based on the design-based direct estimates and county-level covariates. Yearly prevalence estimates at the county level for 49 states, as well as for the entire state of Alaska and the District of Columbia, are developed for six outcomes using BRFSS and NHIS data from the years 1997-2000. The outcomes include smoking and use of common cancer screening procedures. The NHIS/BRFSS combined county-level estimates are substantially different from those based on BRFSS alone

The Impact and Cost-Effectiveness of a Four-Month Regimen for First-Line Treatment of Active Tuberculosis in South Africa.

BACKGROUND: A 4-month first-line treatment regimen for tuberculosis disease (TB) is expected to have a direct impact on patient outcomes and societal costs, as well as an indirect impact on Mycobacterium tuberculosis transmission. We aimed to estimate this combined impact in a high TB-burden country: South Africa. METHOD: An individual based M. tb transmission model was fitted to the TB burden of South Africa using a standard TB natural history framework. We measured the impact on TB burden from 2015-2035 of introduction of a non-inferior 4-month regimen replacing the standard 6-month regimen as first-line therapy. Impact was measured with respect to three separate baselines (Guidelines, Policy and Current), reflecting differences in adherence to TB and HIV treatment guidelines. Further scenario analyses considered the variation in treatment-related parameters and resistance levels. Impact was measured in terms of differences in TB burden and Disability Adjusted Life Years (DALYs) averted. We also examined the highest cost at which the new regimen would be cost-effective for several willingness-to-pay thresholds. RESULTS: It was estimated that a 4-month regimen would avert less than 1% of the predicted 6 million person years with TB disease in South Africa between 2015 and 2035. A similarly small impact was seen on deaths and DALYs averted. Despite this small impact, with the health systems and patient cost savings from regimen shortening, the 4-month regimen could be cost-effective at $436 [NA, 5983] (mean [range]) per month at a willingness-to-pay threshold of one GDP per capita ($6,618). CONCLUSION: The introduction of a non-inferior 4-month first-line TB regimen into South Africa would have little impact on the TB burden. However, under several scenarios, it is likely that the averted societal costs would make such a regimen cost-effective in South Africa

Catchment-wide interactive effects of anthropogenic structures and river levels on fish spawning migrations

Worldwide, rivers are extensively fragmented by anthropogenic structures, reducing longitudinal connectivity, inhibiting migration and leading to severe declines in many fish populations, especially for diadromous species. However, few studies have determined the effects of annual differences in hydrology on catchment penetration past barriers to spawning habitats. We investigated the upstream spawning migration of 120 (n = 61 & 59) acoustic tagged river lamprey (Lampetra fluviatilis) across two contrasting (dry and wet) years in the River Yorkshire Ouse, England. Overall, significantly more lamprey reached spawning habitat (76% vs 39%) and penetrated significantly further upstream (median [km] from release, 53.9 vs 16.8) in the wet year than the dry year. Passage at weirs was almost exclusively during elevated river levels, which directly and collectively influenced catchment-wide distribution, especially in the dry year. Indeed, higher proportions entered two upper tributaries in the wet year (9.8% vs 27.1% and 9.8% vs 30.5%), due to increased passage efficiencies at the two main river weirs (60.5–87.5% and 54.5–83.8%), and reached assumed spawning locations 66.5% and 10.9% quicker. By contrast, there was no difference in numbers of lamprey entering, or time taken to arrive at assumed spawning location, in the two lower river tributaries between years. Our study supports the landscape-scale paradigm for ecosystem restoration because of the observed catchment-level effects of hydrology and barrier distribution on fish migration. Connectivity restoration for migratory fish should be implemented at a catchment scale, with planning incorporating spatial information regarding accessibility to key habitats to reap the largest gains

Editorial: Phosphorus Along the Soil-Freshwater-Ocean Continuum

Phosphorus (P) is an essential element for all organisms. However, there is a P paradox, whereby P concentrations considered deficient in some environments such as in agricultural soils are considered excessive in freshwater, where they trigger eutrophication (e.g., Sims and Sharpley, 2005 and references therein; Elser and Bennet, 2011; Lougheed, 2011). Geographical imbalances also occur, with excesses in Western Europe and North America and deficiencies in regions with highly weathered soils, such as sub-Saharan Africa. There is a strong link between soil P stores and P mobilization and transfer to receiving waters, termed the P transfer continuum (Haygarth et al., 2005). Ensuring adequate P for crop production while minimizing water quality degradation requires consideration of this continuum and an international, interdisciplinary approach. This research topic brings together P studies in soil science, lakes, rivers, estuaries, and oceans, with 74 authors from 12 countries in Asia, Europe, and North America, and identifies key priorities for future research

Deep roots and soil structure

In this opinion article we examine the relationship between penetrometer resistance and soil depth in the field. Assuming that root growth is inhibited at penetrometer resistances > 2.5 MPa, we conclude that in most circumstances the increases in penetrometer resistance with depth are sufficiently great to confine most deep roots to elongating in existing structural pores. We suggest that deep rooting is more likely related to the interaction between root architecture and soil structure than it is to the ability of a root to deform strong soil. Although the ability of roots to deform strong soil is an important trait, we propose it is more closely related to root exploration of surface layers than deep rooting

Modulational instability of bright solitary waves in incoherently coupled nonlinear Schr\"odinger equations

We present a detailed analysis of the modulational instability (MI) of ground-state bright solitary solutions of two incoherently coupled nonlinear Schr\"odinger equations. Varying the relative strength of cross-phase and self-phase effects we show existence and origin of four branches of MI of the two-wave solitary solutions. We give a physical interpretation of our results in terms of the group velocity dispersion (GVD) induced polarization dynamics of spatial solitary waves. In particular, we show that in media with normal GVD spatial symmetry breaking changes to polarization symmetry breaking when the relative strength of the cross-phase modulation exceeds a certain threshold value. The analytical and numerical stability analyses are fully supported by an extensive series of numerical simulations of the full model.Comment: Physical Review E, July, 199