1,556 research outputs found
XTHs from Fragaria vesca: Genomic structure and transcriptomic analysis in ripening fruit and other tissues
Indexación: Scopus.Background: Fragaria vesca or 'woodland strawberry' has emerged as an attractive model for the study of ripening of non-climacteric fruit. It has several advantages, such as its small genome and its diploidy. The recent availability of the complete sequence of its genome opens the possibility for further analysis and its use as a reference species. Fruit softening is a physiological event and involves many biochemical changes that take place at the final stages of fruit development; among them, the remodeling of cell walls by the action of a set of enzymes. Xyloglucan endotransglycosylase/hydrolase (XTH) is a cell wall-associated enzyme, which is encoded by a multigene family. Its action modifies the structure of xyloglucans, a diverse group of polysaccharides that crosslink with cellulose microfibrills, affecting therefore the functional structure of the cell wall. The aim of this work is to identify the XTH-encoding genes present in F. vesca and to determine its transcription level in ripening fruit. Results: The search resulted in identification of 26 XTH-encoding genes named as FvXTHs. Genetic structure and phylogenetic analyses were performed allowing the classification of FvXTH genes into three phylogenetic groups: 17 in group I/II, 2 in group IIIA and 4 in group IIIB. Two sequences were included into the ancestral group. Through a comparative analysis, characteristic structural protein domains were found in FvXTH protein sequences. In complement, expression analyses of FvXTHs by qPCR were performed in fruit at different developmental and ripening stages, as well as, in other tissues. The results showed a diverse expression pattern of FvXTHs in several tissues, although most of them are highly expressed in roots. Their expression patterns are not related to their respective phylogenetic groups. In addition, most FvXTHs are expressed in ripe fruit, and interestingly, some of them (FvXTH 18 and 20, belonging to phylogenic group I/II, and FvXTH 25 and 26 to group IIIB) display an increasing expression pattern as the fruit ripens. Conclusion: A discrete group of FvXTHs (18, 20, 25 and 26) increases their expression during softening of F. vesca fruit, and could take part in cell wall remodeling required for softening in collaboration with other cell wall degrading enzymes.https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4255-
Polarized Dirac fermions in de Sitter spacetime
The tetrad gauge invariant theory of the free Dirac field in two special
moving charts of the de Sitter spacetime is investigated pointing out the
operators that commute with the Dirac one. These are the generators of the
symmetry transformations corresponding to isometries that give rise to
conserved quantities according to the Noether theorem. With their help the
plane wave spinor solutions of the Dirac equation with given momentum and
helicity are derived and the final form of the quantum Dirac field is
established. It is shown that the canonical quantization leads to a correct
physical interpretation of the massive or massless fermion quantum fields.Comment: 19 pages, LaTeX w AMS sym
Crossing Statistic: Bayesian interpretation, model selection and resolving dark energy parametrization problem
By introducing Crossing functions and hyper-parameters I show that the
Bayesian interpretation of the Crossing Statistics [1] can be used trivially
for the purpose of model selection among cosmological models. In this approach
to falsify a cosmological model there is no need to compare it with other
models or assume any particular form of parametrization for the cosmological
quantities like luminosity distance, Hubble parameter or equation of state of
dark energy. Instead, hyper-parameters of Crossing functions perform as
discriminators between correct and wrong models. Using this approach one can
falsify any assumed cosmological model without putting priors on the underlying
actual model of the universe and its parameters, hence the issue of dark energy
parametrization is resolved. It will be also shown that the sensitivity of the
method to the intrinsic dispersion of the data is small that is another
important characteristic of the method in testing cosmological models dealing
with data with high uncertainties.Comment: 14 pages, 4 figures, discussions extended, 1 figure and two
references added, main results unchanged, matches the final version to be
published in JCA
Anisotropic Aerogels for Studying Superfluid He
It may be possible to stabilize new superfluid phases of He with
anisotropic silica aerogels. We discuss two methods that introduce anisotropy
in the aerogel on length scales relevant to superfluid He. First,
anisotropy can be induced with uniaxial strain. A second method generates
anisotropy during the growth and drying stages. We have grown cylindrical
98% aerogels with anisotropy indicated by preferential radial shrinkage
after supercritical drying and find that this shrinkage correlates with small
angle x-ray scattering (SAXS). The growth-induced anisotropy was found to be
out of phase relative to that induced by strain. This has
implications for the possible stabilization of superfluid phases with specific
symmetry.Comment: 6 pages, 4 figures, submitted to Quantum Fluids and Solids (QFS)
conference 200
Globally Anisotropic High Porosity Silica Aerogels
We discuss two methods by which high porosity silica aerogels can be
engineered to exhibit global anisotropy. First, anisotropy can be introduced
with axial strain. In addition, intrinsic anisotropy can result during growth
and drying stages and, suitably controlled, it can be correlated with
preferential radial shrinkage in cylindrical samples. We have performed small
angle X-ray scattering (SAXS) to characterize these two types of anisotropy. We
show that global anisotropy originating from either strain or shrinkage leads
to optical birefringence and that optical cross-polarization studies are a
useful characterization of the uniformity of the imposed global anisotropy.Comment: 18 pages, 14 figures, submitted to Journal of Non-Crystalline Solid
Topologically Alice Strings and Monopoles
Symmetry breaking can produce ``Alice'' strings, which alter scattered
charges and carry monopole number and charge when twisted into loops. Alice
behavior arises algebraically, when strings obstruct unbroken symmetries -- a
fragile criterion. We give a topological criterion, compelling Alice behavior
or deforming it away. Our criterion, that \pi_o(H) acts nontrivially on
\pi_1(H), links topologically Alice strings to topological monopoles. We twist
topologically Alice loops to form monopoles. We show that Alice strings of
condensed matter systems (nematic liquid crystals, helium 3A, and related
non-chiral Bose condensates and amorphous chiral superconductors) are
topologically Alice, and support fundamental monopole charge when twisted into
loops. Thus they might be observed indirectly, not as strings, but as loop-like
point defects. We describe other models, showing Alice strings failing our
topological criterion; and twisted Alice loops supporting deposited, but not
fundamental, monopole number.Comment: 2 figures; this paper consolidates preprints hep-th/0304161 and
hep-th/0304162, to appear in Phys. Rev.
Cosmological Constraints from calibrated Yonetoku and Amati relation implies Fundamental plane of Gamma-ray bursts
We consider two empirical relations using data only from the prompt emission
of Gamma-Ray Bursts (GRBs), peak energy () - peak luminosity ()
relation (so called Yonetoku relation) and -isotropic energy () relation (so called Amati relation). We first suggest the independence
of the two relations although they have been considered similar and dependent.
From this viewpoint, we compare constraints on cosmological parameters,
and , from the Yonetoku and Amati relations
calibrated by low-redshift GRBs with . We found that they are
different in 1- level, although they are still consistent in 2-
level. This and the fact that both Amati and Yonetoku relations have systematic
errors larger than statistical errors suggest the existence of a hidden
parameter of GRBs. We introduce the luminosity time defined by as a hidden parameter to obtain a generalized Yonetoku
relation as . The new relation has much smaller systematic
error, 30%, and can be regarded as "Fundamental plane" of GRBs. We show a
possible radiation model for this new relation. Finally we apply the new
relation for high-redshift GRBs with to obtain
, which is consistent with the
concordance cosmological model within 2- level.Comment: 5 pages, 6 figures, published in JCA
Probing the cosmic acceleration from combinations of different data sets
We examine in some detail the influence of the systematics in different data
sets including type Ia supernova sample, baryon acoustic oscillation data and
the cosmic microwave background information on the fitting results of the
Chevallier-Polarski-Linder parametrization. We find that the systematics in the
data sets does influence the fitting results and leads to different evolutional
behavior of dark energy. To check the versatility of Chevallier-Polarski-Linder
parametrization, we also perform the analysis on the Wetterich parametrization
of dark energy. The results show that both the parametrization of dark energy
and the systematics in data sets influence the evolutional behavior of dark
energy.Comment: 15 pages, 5 figures and 1 table, major revision, delete bao a data,
main results unchanged. jcap in press
Statefinder diagnostic in a torsion cosmology
We apply the statefinder diagnostic to the torsion cosmology, in which an
accounting for the accelerated universe is considered in term of a
Riemann-Cartan geometry: dynamic scalar torsion. We find that there are some
typical characteristic of the evolution of statefinder parameters for the
torsion cosmology that can be distinguished from the other cosmological models.
Furthermore, we also show that statefinder diagnostic has a direct bearing on
the critical points. The statefinder diagnostic divides the torsion parameter
into differential ranges, which is in keeping with the requirement of
dynamical analysis. In addition, we fit the scalar torsion model to ESSENCE
supernovae data and give the best fit values of the model parameters.Comment: 18 pages, 15 figures, accepted paper in JCA
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Engineering Analysis of Intermediate Loop and Process Heat Exchanger Requirements to Include Configuration Analysis and Materials Needs
The need to locate advanced hydrogen production facilities a finite distance away from a nuclear power source necessitates the need for an intermediate heat transport loop (IHTL). This IHTL must not only efficiently transport energy over distances up to 500 meters but must also be capable of operating at high temperatures (>850oC) for many years. High temperature, long term operation raises concerns of material strength, creep resistance and general material stability (corrosion resistance). IHTL design is currently in the initial stages. Many questions remain to be answered before intelligent design can begin. The report begins to look at some of the issues surrounding the main components of an IHTL. Specifically, a stress analysis of a compact heat exchanger design under expected operating conditions is reported. Also the results of a thermal analysis performed on two ITHL pipe configurations for different heat transport fluids are presented. The configurations consist of separate hot supply and cold return legs as well as annular design in which the hot fluid is carried in an inner pipe and the cold return fluids travels in the opposite direction in the annular space around the hot pipe. The effects of insulation configurations on pipe configuration performance are also reported. Finally, a simple analysis of two different process heat exchanger designs, one a tube in shell type and the other a compact or microchannel reactor are evaluated in light of catalyst requirements. Important insights into the critical areas of research and development are gained from these analyses, guiding the direction of future areas of research
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