RAMPAC: a program for analysis of complicated Raman spectra

A computer program for the analysis of complicated (e.g. multi-line) Raman spectra is described. The program includes automatic peak search, various procedures for background determination, peak fit and spectrum deconvolution and extensive spectrum handling procedures

Extracellular matrix components are required to protect bacillus subtilis from pseudomonas invasion and co-colonization of plants

Plants are colonized by a vast variety of microbes. Among them, bacteria are the most predominant and are able to adapt to environmental changes and interact with other microorganisms using a wide array of molecules, metabolic plasticity and secretion systems. One way bacteria have evolved to succeed in this competitive scenario is the formation of biofilms which provides protection to the cells, modulates the flux of signals and controls cellular differentiation. Thus, efforts are encouraged to really determine the functionality of the bacterial extracellular matrix. In this study, we have employed microbiological and microscopic techniques to study the interaction between Bacillus subtilis 3610 and Pseudomonas chlororaphis PCL1606. We demonstrate the important role of the extracellular matrix in protecting B. subtilis colonies from infiltration by Pseudomonas. Furthermore, time-lapse confocal laser scanning microscopy (CLSM) analyses of the bacterial interactions have permitted to complete the study of the bacterial behaviors and to measure bacterial expansion rates. Surprising, we find that the Pseudomonas type VI secretion system (T6SS) is required in the cell-to-cell contact with matrix-impaired B. subtilis cells, revealing a novel role for T6SS against Gram-positive bacteria. In response to P. chlororaphis infiltration, we find that B. subtilis activates sporulation and expresses motility-related genes. Confocal microscopy of the bacterial interactions using plant organs highlights the functional importance of these different bacterial strategies in their coexistence as stable bacterial communities. The findings further our understanding of the functional role played by biofilms in mediating bacterial social interactions.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Ethnolinguistic concordance and the receipt of postpartum IUD counseling services in Sri Lanka.

CONTEXT: Ethnic and linguistic concordance are important dimensions of the patient-physician relationship, and are linked to health care disparities. However, evidence on the associations between health behavior and outcomes and patient-provider concordance is limited, especially in low- and middle-income settings. METHODS: To examine how concordance between women and their primary health midwife is associated with women's receipt of postpartum IUD counseling, observational data from a cluster-randomized trial assessing an intervention to increase postpartum IUD counseling were used. Data on 4,497 women who delivered at six hospitals in Sri Lanka between September 2015 and March 2017 were merged with data on 245 primary health midwives, and indicators of linguistic concordance, ethnic concordance and their interaction were generated. Multivariate logistic regression analyses were used to assess the associations between concordance and women's receipt of counseling. RESULTS: Women from non-Sinhalese groups in Sri Lanka face disparities in the receipt of postpartum IUD counseling. Compared with the ethnolinguistic majority (Sinhalese women who speak only Sinhala), non-Sinhalese women have lower odds of having received postpartum IUD counseling, whether they speak both Sinhala and Tamil (odds ratio, 0.6) or only Tamil (0.5). Ethnic discordance- rather than linguistic discordance-is the primary driver of this disparity. CONCLUSIONS: The findings highlight the need for interventions that aim to bridge the sociocultural gaps between providers and patients. Matching women and their providers on ethnolinguistic background may help to reduce disparities in care.Accepted manuscrip

Paroxysmal eye–head movements in Glut1 deficiency syndrome

Objective:To describe a characteristic paroxysmal eye–head movement disorder that occurs in infants with Glut1 deficiency syndrome (Glut1 DS).Methods:We retrospectively reviewed the medical charts of 101 patients with Glut1 DS to obtain clinical data about episodic abnormal eye movements and analyzed video recordings of 18 eye movement episodes from 10 patients.Results:A documented history of paroxysmal abnormal eye movements was found in 32/101 patients (32%), and a detailed description was available in 18 patients, presented here. Episodes started before age 6 months in 15/18 patients (83%), and preceded the onset of seizures in 10/16 patients (63%) who experienced both types of episodes. Eye movement episodes resolved, with or without treatment, by 6 years of age in 7/8 patients with documented long-term course. Episodes were brief (usually &lt;5 minutes). Video analysis revealed that the eye movements were rapid, multidirectional, and often accompanied by a head movement in the same direction. Eye movements were separated by clear intervals of fixation, usually ranging from 200 to 800 ms. The movements were consistent with eye–head gaze saccades. These movements can be distinguished from opsoclonus by the presence of a clear intermovement fixation interval and the association of a same-direction head movement.Conclusions:Paroxysmal eye–head movements, for which we suggest the term aberrant gaze saccades, are an early symptom of Glut1 DS in infancy. Recognition of the episodes will facilitate prompt diagnosis of this treatable neurodevelopmental disorder.</jats:sec

Optimized in-flight absolute calibration for extended CMB surveys

Accurate measurements of the Cosmic Microwave Background (CMB) anisotropy call for high precision and reliability of the in-flight calibration. For extended surveys the CMB dipole provides an excellent calibration source at frequencies lower than 200 GHz; however poorly known foreground emissions, such as diffuse galactic components, complicate the signal and introduce a systematic error in the calibration. We show that introducing a weight function that takes into account the uncertainty in the a priori knowledge of the sky, allows us to substantially improve the calibration accuracy with respect to methods involving galactic latitude cuts. This new method is tested for Planck-LFI radiometers at 30 and 100 GHz. On short time scales (less than 1 day) the absolute calibration of each channel can be recovered with an overall 1-2% accuracy. We also consider the effect of CMB anisotropy itself on the calibration, and find that knowledge of the CMB pattern on large scales is needed to keep the short-time scale calibration accuracy within 1%Comment: 11 pages, 15 figures, accepted to Astronomy & Astrophysic

Respiratory hospital admission risk near large composting facilities

AbstractBackgroundLarge-scale composting can release bioaerosols in elevated quantities, but there are few studies of health effects on nearby communities.MethodsA cross-sectional ecological small area design was used to examine risk of respiratory hospital admissions within 2500m of all 148 English large-scale composting facilities in 2008–10. Statistical analyses used a random intercept Poisson regression model at Census Output Area (COA) level (mean population 310). Models were adjusted for age, sex, deprivation and tobacco sales.ResultsAnalysing 34,963 respiratory hospital admissions in 4656 COAs within 250–2500m of a site, there were no significant trends using pre-defined distance bands of >250–750m, >750–1500m and >1500–2500m. Using a continuous measure of distance, there was a small non-statistically significant (p=0.054) association with total respiratory admissions corresponding to a 1.5% (95% CI: 0.0–2.9%) decrease in risk if moving from 251m to 501m. There were no significant associations for subgroups of respiratory infections, asthma or chronic obstructive pulmonary disease.ConclusionThis national study does not provide evidence for increased risks of respiratory hospital admissions in those living beyond 250m of an outdoor composting area perimeter. Further work using better measures of exposure and exploring associations with symptoms and disease prevalence, especially in vulnerable groups, is recommended to support regulatory approaches

Disordering to Order: de Vries behavior from a Landau theory for smectics

We show that Landau theory for the isotropic, nematic, smectic A, and smectic C phases generically, but not ubiquitously, implies de Vries behavior. I.e., a continuous AC transition can occur with little layer contraction; the birefringence decreases as temperature T is lowered above this transition, and increases again below the transition. This de Vries behavior occurs in models with unusually small orientational order, and is preceded by a first order I &#8722; A transition. A first order AC transition with elements of de Vries behavior can also occur. These results correspond well with experimental work to date.Comment: 4 pages, 2 page appendi