32 research outputs found
Organization of atomic bond tensions in model glasses
In order to understand whether internal stresses in glasses are correlated or
randomly distributed, we study the organization of atomic bond tensions (normal
forces between pairs of atoms). Measurements of the invariants of the atomic
bond tension tensor in simulated 2D and 3D binary Lennard-Jones glasses, reveal
new and unexpected correlations and provide support for Alexander's conjecture
about the non-random character of internal stresses in amorphous solids
Apparent finite-size effects in the dynamics of supercooled liquids
Molecular dynamics simulations are performed for a supercooled simple liquid
with changing the system size from N=108 to to examine possible
finite-size effects. Although almost no systematic deviation is detected in the
static pair correlation functions, it is demonstrated that the structural
relaxation in a small system becomes considerably slower than that in
larger systems for temperatures below at which the size of the
cooperative particle motions becomes comparable to the unit cell length of the
small system. The discrepancy increases with decreasing temperature.Comment: 4 pages 5 figure
A Topological Glass
We propose and study a model with glassy behavior. The state space of the
model is given by all triangulations of a sphere with nodes, half of which
are red and half are blue. Red nodes want to have 5 neighbors while blue ones
want 7. Energies of nodes with different numbers of neighbors are supposed to
be positive. The dynamics is that of flipping the diagonal of two adjacent
triangles, with a temperature dependent probability. We show that this system
has an approach to a steady state which is exponentially slow, and show that
the stationary state is unordered. We also study the local energy landscape and
show that it has the hierarchical structure known from spin glasses. Finally,
we show that the evolution can be described as that of a rarefied gas with
spontaneous generation of particles and annihilating collisions
Equilibration times in numerical simulation of structural glasses: Comparing parallel tempering and conventional molecular dynamics
Generation of equilibrium configurations is the major obstacle for numerical
investigation of the slow dynamics in supercooled liquid states. The parallel
tempering (PT) technique, originally proposed for the numerical equilibration
of discrete spin-glass model configurations, has recently been applied in the
study of supercooled structural glasses. We present an investigation of the
ability of parallel tempering to properly sample the liquid configuration space
at different temperatures, by mapping the PT dynamics into the dynamics of the
closest local potential energy minima (inherent structures). Comparing the PT
equilibration process with the standard molecular dynamics equilibration
process we find that the PT does not increase the speed of equilibration of the
(slow) configurational degrees of freedom.Comment: 5 pages, 3 figure
Structural Probe of a Glass Forming Liquid: Generalized Compressibility
We introduce a new quantity to probe the glass transition. This quantity is a
linear generalized compressibility which depends solely on the positions of the
particles. We have performed a molecular dynamics simulation on a glass forming
liquid consisting of a two component mixture of soft spheres in three
dimensions. As the temperature is lowered (or as the density is increased), the
generalized compressibility drops sharply at the glass transition, with the
drop becoming more and more abrupt as the measurement time increases. At our
longest measurement times, the drop occurs approximately at the mode coupling
temperature . The drop in the linear generalized compressibility occurs at
the same temperature as the peak in the specific heat. By examining the
inherent structure energy as a function of temperature, we find that our
results are consistent with the kinetic view of the glass transition in which
the system falls out of equilibrium. We find no size dependence and no evidence
for a second order phase transition though this does not exclude the
possibility of a phase transition below the observed glass transition
temperature. We discuss the relation between the linear generalized
compressibility and the ordinary isothermal compressibility as well as the
static structure factor.Comment: 18 pages, Latex, 26 encapsulated postscript figures, revised paper is
shorter, to appear in Phys. Rev.
Time and length scales in supercooled liquids
We numerically obtain the first quantitative demonstration that development
of spatial correlations of mobility as temperature is lowered is responsible
for the ``decoupling'' of transport properties of supercooled liquids. This
result further demonstrates the necessity of a spatial description of the glass
formation and therefore seriously challenges a number of popular alternative
theoretical descriptions.Comment: 4 pages, 4 figs; improved version: new refs and discussion
Plastic Flow in Two-Dimensional Solids
A time-dependent Ginzburg-Landau model of plastic deformation in
two-dimensional solids is presented. The fundamental dynamic variables are the
displacement field \bi u and the lattice velocity {\bi v}=\p {\bi u}/\p t.
Damping is assumed to arise from the shear viscosity in the momentum equation.
The elastic energy density is a periodic function of the shear and tetragonal
strains, which enables formation of slips at large strains. In this work we
neglect defects such as vacancies, interstitials, or grain boundaries. The
simplest slip consists of two edge dislocations with opposite Burgers vectors.
The formation energy of a slip is minimized if its orientation is parallel or
perpendicular to the flow in simple shear deformation and if it makes angles of
with respect to the stretched direction in uniaxial stretching.
High-density dislocations produced in plastic flow do not disappear even if
the flow is stopped. Thus large applied strains give rise to metastable,
structurally disordered states. We divide the elastic energy into an elastic
part due to affine deformation and a defect part. The latter represents degree
of disorder and is nearly constant in plastic flow under cyclic straining.Comment: 16pages, Figures can be obtained at
http://stat.scphys.kyoto-u.ac.jp/index-e.htm
CDMS, Supersymmetry and Extra Dimensions
The CDMS experiment aims to directly detect massive, cold dark matter
particles originating from the Milky Way halo. Charge and lattice excitations
are detected after a particle scatters in a Ge or Si crystal kept at ~30 mK,
allowing to separate nuclear recoils from the dominating electromagnetic
background. The operation of 12 detectors in the Soudan mine for 75 live days
in 2004 delivered no evidence for a signal, yielding stringent limits on dark
matter candidates from supersymmetry and universal extra dimensions. Thirty Ge
and Si detectors are presently installed in the Soudan cryostat, and operating
at base temperature. The run scheduled to start in 2006 is expected to yield a
one order of magnitude increase in dark matter sensitivity.Comment: To be published in the proceedings of the 7th UCLA symposium on
sources and detection of dark matter and dark energy in the universe, Marina
del Rey, Feb 22-24, 200
Jamming at Zero Temperature and Zero Applied Stress: the Epitome of Disorder
We have studied how 2- and 3- dimensional systems made up of particles
interacting with finite range, repulsive potentials jam (i.e., develop a yield
stress in a disordered state) at zero temperature and applied stress. For each
configuration, there is a unique jamming threshold, , at which
particles can no longer avoid each other and the bulk and shear moduli
simultaneously become non-zero. The distribution of values becomes
narrower as the system size increases, so that essentially all configurations
jam at the same in the thermodynamic limit. This packing fraction
corresponds to the previously measured value for random close-packing. In fact,
our results provide a well-defined meaning for "random close-packing" in terms
of the fraction of all phase space with inherent structures that jam. The
jamming threshold, Point J, occurring at zero temperature and applied stress
and at the random close-packing density, has properties reminiscent of an
ordinary critical point. As Point J is approached from higher packing
fractions, power-law scaling is found for many quantities. Moreover, near Point
J, certain quantities no longer self-average, suggesting the existence of a
length scale that diverges at J. However, Point J also differs from an ordinary
critical point: the scaling exponents do not depend on dimension but do depend
on the interparticle potential. Finally, as Point J is approached from high
packing fractions, the density of vibrational states develops a large excess of
low-frequency modes. All of these results suggest that Point J may control
behavior in its vicinity-perhaps even at the glass transition.Comment: 21 pages, 20 figure
Fungal diversity notes 253â366: taxonomic and phylogenetic contributions to fungal taxa
Notes on 113 fungal taxa are compiled in this paper, including 11 new genera, 89 new species, one new subspecies, three new combinations and seven reference specimens. A wide geographic and taxonomic range of fungal taxa are detailed. In the Ascomycota the new genera Angustospora (Testudinaceae), Camporesia (Xylariaceae), Clematidis, Crassiparies (Pleosporales genera incertae sedis), Farasanispora, Longiostiolum (Pleosporales genera incertae sedis), Multilocularia (Parabambusicolaceae), Neophaeocryptopus (Dothideaceae), Parameliola (Pleosporales genera incertae sedis), and Towyspora (Lentitheciaceae) are introduced. Newly introduced species are Angustospora nilensis, Aniptodera aquibella, Annulohypoxylon albidiscum, Astrocystis thailandica, Camporesia sambuci, Clematidis italica, Colletotrichum menispermi, C. quinquefoliae, Comoclathris pimpinellae, Crassiparies quadrisporus, Cytospora salicicola, Diatrype thailandica, Dothiorella rhamni, Durotheca macrostroma, Farasanispora avicenniae, Halorosellinia rhizophorae, Humicola koreana, Hypoxylon lilloi, Kirschsteiniothelia tectonae, Lindgomyces okinawaensis, Longiostiolum tectonae, Lophiostoma pseudoarmatisporum, Moelleriella phukhiaoensis, M. pongdueatensis, Mucoharknessia anthoxanthi, Multilocularia bambusae, Multiseptospora thysanolaenae, Neophaeocryptopus cytisi, Ocellularia arachchigei, O. ratnapurensis, Ochronectria thailandica, Ophiocordyceps karstii, Parameliola acaciae, P. dimocarpi, Parastagonospora cumpignensis, Pseudodidymosphaeria phlei, Polyplosphaeria thailandica, Pseudolachnella brevifusiformis, Psiloglonium macrosporum, Rhabdodiscus albodenticulatus, Rosellinia chiangmaiensis, Saccothecium rubi, Seimatosporium pseudocornii, S. pseudorosae, Sigarispora ononidis and Towyspora aestuari. New combinations are provided for Eutiarosporella dactylidis (sexual morph described and illustrated) and Pseudocamarosporium pini. Descriptions, illustrations and / or reference specimens are designated for Aposphaeria corallinolutea, Cryptovalsa ampelina, Dothiorella vidmadera, Ophiocordyceps formosana, Petrakia echinata, Phragmoporthe conformis and Pseudocamarosporium pini. The new species of Basidiomycota are Agaricus coccyginus, A. luteofibrillosus, Amanita atrobrunnea, A. digitosa, A. gleocystidiosa, A. pyriformis, A. strobilipes, Bondarzewia tibetica, Cortinarius albosericeus, C. badioflavidus, C. dentigratus, C. duboisensis, C. fragrantissimus, C. roseobasilis, C. vinaceobrunneus, C. vinaceogrisescens, C. wahkiacus, Cyanoboletus hymenoglutinosus, Fomitiporia atlantica, F. subtilissima, Ganoderma wuzhishanensis, Inonotus shoreicola, Lactifluus armeniacus, L. ramipilosus, Leccinum indoaurantiacum, Musumecia alpina, M. sardoa, Russula amethystina subp. tengii and R. wangii are introduced. Descriptions, illustrations, notes and / or reference specimens are designated for Clarkeinda trachodes, Dentocorticium ussuricum, Galzinia longibasidia, Lentinus stuppeus and Leptocorticium tenellum. The other new genera, species new combinations are Anaeromyces robustus, Neocallimastix californiae and Piromyces finnis from Neocallimastigomycota, Phytophthora estuarina, P. rhizophorae, Salispina, S. intermedia, S. lobata and S. spinosa from Oomycota, and Absidia stercoraria, Gongronella orasabula, Mortierella calciphila, Mucor caatinguensis, M. koreanus, M. merdicola and Rhizopus koreanus in Zygomycota