13,684 research outputs found
A new procedure to analyze RNA non-branching structures
RNA structure prediction and structural motifs analysis are challenging tasks in the investigation of RNA function. We propose a novel procedure to detect structural motifs shared between two RNAs (a reference and a target). In particular, we developed two core modules: (i) nbRSSP_extractor, to assign a unique structure to the reference RNA encoded by a set of non-branching structures; (ii) SSD_finder, to detect structural motifs that the target RNA shares with the reference, by means of a new score function that rewards the relative distance of the target non-branching structures compared to the reference ones. We integrated these algorithms with already existing software to reach a coherent pipeline able to perform the following two main tasks: prediction of RNA structures (integration of RNALfold and nbRSSP_extractor) and search for chains of matches (integration of Structator and SSD_finder)
Non-Lipschitz points and the SBV regularity of the minimum time function
This paper is devoted to the study of the Hausdorff dimension of the singular
set of the minimum time function under controllability conditions which do
not imply the Lipschitz continuity of . We consider first the case of normal
linear control systems with constant coefficients in . We
characterize points around which is not Lipschitz as those which can be
reached from the origin by an optimal trajectory (of the reversed dynamics)
with vanishing minimized Hamiltonian. Linearity permits an explicit
representation of such set, that we call . Furthermore, we show
that is -rectifiable with positive
-measure. Second, we consider a class of control-affine
\textit{planar} nonlinear systems satisfying a second order controllability
condition: we characterize the set in a neighborhood of the
origin in a similar way and prove the -rectifiability of
and that . In both cases, is
known to have epigraph with positive reach, hence to be a locally function
(see \cite{CMW,GK}). Since the Cantor part of must be concentrated in
, our analysis yields that is , i.e., the Cantor part of
vanishes. Our results imply also that is locally of class
outside a -rectifiable set. With small
changes, our results are valid also in the case of multiple control input.Comment: 23 page
Schur functions and their realizations in the slice hyperholomorphic setting
we start the study of Schur analysis in the quaternionic setting using the
theory of slice hyperholomorphic functions. The novelty of our approach is that
slice hyperholomorphic functions allows to write realizations in terms of a
suitable resolvent, the so called S-resolvent operator and to extend several
results that hold in the complex case to the quaternionic case. We discuss
reproducing kernels, positive definite functions in this setting and we show
how they can be obtained in our setting using the extension operator and the
slice regular product. We define Schur multipliers, and find their co-isometric
realization in terms of the associated de Branges-Rovnyak space
Nomenclature of the hydrotalcite supergroup: Natural layered double hydroxides
Layered double hydroxide (LDH) compounds are characterized by structures in which layers with a brucite-like structure carry a net positive charge, usually due to the partial substitution of trivalent octahedrally coordinated cations for divalent cations, giving a general layer formula [( M 2+ 1-x M 3+ x )(OH)2] x +. This positive charge is balanced by anions which are intercalated between the layers. Intercalated molecular water typically provides hydrogen bonding between the brucite layers. In addition to synthetic compounds, some of which have significant industrial applications, more than 40 mineral species conform to this description. Hydrotalcite, Mg6Al2(OH) 16[CO3]•4H2O, as the longest-known example, is the archetype of this supergroup of minerals. We review the history, chemistry, crystal structure, polytypic variation and status of all hydrotalcite-supergroup species reported to date. The dominant divalent cations, M 2+, that have been reported in hydrotalcite supergroup minerals are Mg, Ca, Mn, Fe, Ni, Cu and Zn; the dominant trivalent cations, M 3+, are Al, Mn, Fe, Co and Ni. The most common intercalated anions are (CO3)2-, (SO4)2- and Cl -; and OH-, S2- and [Sb(OH)6] - have also been reported. Some species contain intercalated cationic or neutral complexes such as [Na(H2O)6]+ or [MgSO4]0. We define eight groups within the supergroup on the basis of a combination of criteria. These are (1) the hydrotalcite group, with M 2+:M 3+ = 3:1 (layer spacing ∼7.8 Å); (2) the quintinite group, with M 2+:M 3+ = 2:1 (layer spacing ∼7.8 Å); (3) the fougèrite group, with M 2+ = Fe2+, M 3+ = Fe3+ in a range of ratios, and with O2- replacing OH- in the brucite module to maintain charge balance (layer spacing ∼7.8 Å); (4) the woodwardite group, with variable M 2+:M 3+ and interlayer [SO4] 2-, leading to an expanded layer spacing of ∼8.9 Å; (5) the cualstibite group, with interlayer [Sb(OH)6]- and a layer spacing of ∼9.7 Å; (6) the glaucocerinite group, with interlayer [SO4]2- as in the woodwardite group, and with additional interlayer H2O molecules that further expand the layer spacing to ∼11 Å; (7) the wermlandite group, with a layer spacing of ∼11 Å, in which cationic complexes occur with anions between the brucite-like layers; and (8) the hydrocalumite group, with M 2+ = Ca2+ and M 3+ = Al, which contains brucite-like layers in which the Ca:Al ratio is 2:1 and the large cation, Ca2+, is coordinated to a seventh ligand of 'interlayer' water. The principal mineral status changes are as follows. (1) The names manasseite, sjögrenite and barbertonite are discredited; these minerals are the 2H polytypes of hydrotalcite, pyroaurite and stichtite, respectively. Cyanophyllite is discredited as it is the 1M polytype of cualstibite. (2) The mineral formerly described as fougèrite has been found to be an intimate intergrowth of two phases with distinct Fe 2+:Fe3+ ratios. The phase with Fe2+:Fe 3+ = 2:1 retains the name fougèrite; that with Fe 2+:Fe3+ = 1:2 is defined as the new species trébeurdenite. (3) The new minerals omsite (IMA2012-025), Ni 2Fe3+(OH)6[Sb(OH)6], and mössbauerite (IMA2012-049), Fe3+ 6O 4(OH)8[CO3]•3H2O, which are both in the hydrotalcite supergroup are included in the discussion. (4) Jamborite, carrboydite, zincaluminite, motukoreaite, natroglaucocerinite, brugnatellite and muskoxite are identified as questionable species which need further investigation in order to verify their structure and composition. (5) The ranges of compositions currently ascribed to motukoreaite and muskoxite may each represent more than one species. The same applies to the approved species hydrowoodwardite and hydrocalumite. (6) Several unnamed minerals have been reported which are likely to represent additional species within the supergroup. This report has been approved by the Commission on New Minerals, Nomenclature and Classification (CNMNC) of the International Mineralogical Association, voting proposal 12-B. We also propose a compact notation for identifying synthetic LDH phases, for use by chemists as a preferred alternative to the current widespread misuse of mineral names. © 2012 Mineralogical Society.Fil: Mills, S.J.. Museum Victoria; AustraliaFil: Christy, A.G.. Australian National University. Centre for Advanced Microscopy; AustraliaFil: Génin, J. M. R.. CNRS-Université de Lorraine; FranciaFil: Kameda, T.. Tohoku University. Graduate School of Environmental Studies; JapónFil: Colombo, Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Centro de Investigaciones en Ciencias de la Tierra. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Centro de Investigaciones en Ciencias de la Tierra; Argentin
Shimura varieties in the Torelli locus via Galois coverings of elliptic curves
We study Shimura subvarieties of obtained from families of
Galois coverings where is a smooth complex
projective curve of genus and . We give the complete list
of all such families that satisfy a simple sufficient condition that ensures
that the closure of the image of the family via the Torelli map yields a
Shimura subvariety of for and for all and
for and . In a previous work of the first and second author
together with A. Ghigi [FGP] similar computations were done in the case .
Here we find 6 families of Galois coverings, all with and
and we show that these are the only families with satisfying this
sufficient condition. We show that among these examples two families yield new
Shimura subvarieties of , while the other examples arise from
certain Shimura subvarieties of already obtained as families of
Galois coverings of in [FGP]. Finally we prove that if a family
satisfies this sufficient condition with , then .Comment: 18 pages, to appear in Geometriae Dedicat
Orbital dynamics of "smart dust" devices with solar radiation pressure and drag
This paper investigates how perturbations due to asymmetric solar radiation pressure, in the presence of Earth shadow, and atmospheric drag can be balanced to obtain long-lived Earth centred orbits for swarms of micro-scale 'smart dust' devices, without the use of active control. The secular variation of Keplerian elements is expressed analytically through an averaging technique. Families of solutions are then identified where Sun-synchronous apse-line precession is achieved passively to maintain asymmetric solar radiation pressure. The long-term orbit evolution is characterized by librational motion, progressively decaying due to the non-conservative effect of atmospheric drag. Long-lived orbits can then be designed through the interaction of energy gain from asymmetric solar radiation pressure and energy dissipation due to drag. In this way, the usual short drag lifetime of such high area-to-mass spacecraft can be greatly extended (and indeed selected). In addition, the effect of atmospheric drag can be exploited to ensure the rapid end-of-life decay of such devices, thus preventing long-lived orbit debris
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