Ab-initio calculations of the proton location in topaz-OH, Al2SiO4(OH)2

The position of hydrogen in the structure of topaz-OH was determined by means of ab-initio quantum-mechanic calculations. Static lattice energy calculations predict the existence of four non-equivalent positions of protons, which are characterized by O4-H1... O1, O4-H2... O2, O4-H3... O3 and O4-H4... O4 hydrogen bonds. The distribution of the protons between positions of local equilibrium is controlled by the proton-proton avoidance rule and the strength of the hydrogen bonds. The most favourable configuration of hydrogen atoms is achieved for adjacent protons, which form O4-H3... O3 and O4-H4... O4 hydrogen bonds, respectively. The thermal excitation of atoms at a temperature of 55 K is large enough for the hydrogen atoms occasionally to change their positions to form O4-H1... O1 and O4-H2... O2 bonds. At ambient pressures and higher temperatures the protons are in a dynamic exchange between the allowed positions of local minima. As a consequence, for nearly room-temperature conditions, the dynamic change between different structural configurations leads to the violation of all possible symmetry elements and with that to space group #E5/E5#1. The flipping of the protons between different sites is achieved by simple rotation of the OH-dipole and does not produce any significant distortion of the framework of topaz, whose symmetry remains that of the space group Pbnm. Therefore, no reduction of symmetry has been observed in former X-ray studies on topaz-OH. Calculated IR absorption spectra of topaz-OH were found to be in good agreement with measured spectra. According to the calculations, the two favourable configurations of protons might correspond to the measured peak splitting within the OH-stretching range. An experimentally observed low-frequency band at 3520 cm−1 was assigned to the OH-stretching of the O4-H3... O3 bond, while the band at 3600 cm−1 was attributed to OH-stretching of the O4-H4... O4 hydrogen bond. The broad peak in FAR-IR frequency range at 100-150 cm−1 is attributed to the stretching of H3... O3 and H4... O4 contacts. The rate of proton exchange at 670 K among different sites was estimated by ab-inito molecular dynamic simulations. The calculations predict that flipping of adjacent protons between O4-H3... O3 and O4-H4... O4 bonds at 670 K occur at a rate of about 1.96 TH

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes) : research article

Background The phylogenetic tree of Galliformes (gamebirds, including megapodes, currassows, guinea fowl, New and Old World quails, chicken, pheasants, grouse, and turkeys) has been considerably remodeled over the last decades as new data and analytical methods became available. Analyzing presence/absence patterns of retroposed elements avoids the problems of homoplastic characters inherent in other methodologies. In gamebirds, chicken repeats 1 (CR1) are the most prevalent retroposed elements, but little is known about the activity of their various subtypes over time. Ascertaining the fixation patterns of CR1 elements would help unravel the phylogeny of gamebirds and other poorly resolved avian clades. Results We analyzed 1,978 nested CR1 elements and developed a multidimensional approach taking advantage of their transposition in transposition character (TinT) to characterize the fixation patterns of all 22 known chicken CR1 subtypes. The presence/absence patterns of those elements that were active at different periods of gamebird evolution provided evidence for a clade (Cracidae + (Numididae + (Odontophoridae + Phasianidae))) not including Megapodiidae; and for Rollulus as the sister taxon of the other analyzed Phasianidae. Genomic trace sequences of the turkey genome further demonstrated that the endangered African Congo Peafowl (Afropavo congensis) is the sister taxon of the Asian Peafowl (Pavo), rejecting other predominantly morphology-based groupings, and that phasianids are monophyletic, including the sister taxa Tetraoninae and Meleagridinae. Conclusions The TinT information concerning relative fixation times of CR1 subtypes enabled us to efficiently investigate gamebird phylogeny and to reconstruct an unambiguous tree topology. This method should provide a useful tool for investigations in other taxonomic groups as well

Preceramic Polymers for Additive Manufacturing of Silicate Ceramics.

The utilization of preceramic polymers (PCPs) to produce both oxide and non-oxide ceramics has caught significant interest, owing to their exceptional characteristics. Diverse types of polymer-derived ceramics (PDCs) synthesized by using various PCPs have demonstrated remarkable characteristics such as exceptional thermal stability, resistance to corrosion and oxidation at elevated temperatures, biocompatibility, and notable dielectric properties, among others. The application of additive manufacturing techniques to produce PDCs opens up new opportunities for manufacturing complex and unconventional ceramic structures with complex designs that might be challenging or impossible to achieve using traditional manufacturing methods. This is particularly advantageous in industries like aerospace, automotive, and electronics. In this review, various categories of preceramic polymers employed in the synthesis of polymer-derived ceramics are discussed, with a particular focus on the utilization of polysiloxane and polysilsesquioxanes to generate silicate ceramics. Further, diverse additive manufacturing techniques adopted for the fabrication of polymer-derived silicate ceramics are described

SEMICONDUCTOR LASER PROPERTY TO FORM INTERRUPTING RADIATION AT THE MOMENT OF SWITCHING ON AND SWITCHING OFF OF THE PUMPING ELECTRIC CURRENT

Semiconductor laser property to form interrupting radiation at the moment of switching on and switching off of the pumping electric current, belonging to a field of semiconductor lasers physics is described. An amplitude modulation of radiation during the moments of switching of a pumping electric current has coherent character. The average period of fluctuations is determined by tens femtoseconds, the whole process duration is some tens picoseconds. The device can be used for the noncontact highspeed precision control of geometrical parameters of the items, various defects definition in optically transparent products. The result of the research is a basis for new directions in a laser tomography, the measuring technique, use of this property will essentially simplify laser and fiber-optical gyroscopes

Classification of perovskite structural types with dynamical octahedral tilting.

Perovskites ABX3 with delocalized positions of the X atoms represent a distinct class of dynamically distorted structures with peculiar structural relations and physical properties. The delocalization originates from atoms crossing shallow barriers of the potential energy surface. Quantum mechanically, they can be treated similar to light atoms in diffusive states. Many of these perovskite structures are widely used functional materials thanks to their particular physical properties, such as superconductivity, ferroelectricity and photo-activity. A number of these properties are related to static or dynamic motion of octahedral units. Yet, a full understanding of the relationships between perovskite crystal structure, chemical bonding and physical properties is currently missing. Several studies indicate the existence of dynamic disorder generated by anharmonic motion of octahedral units, e.g. in halide perovskite structures. To simplify structural analysis of such systems we derive a set of space groups for simple perovskites ABX3 with dynamical octahedral tilting. The derived space groups extend the well established space group tables for static tiltings by Glazer [Acta Cryst. B (1972). 28, 3384-3392], Aleksandrov [Ferroelectrics (1976). 24, 801-805] and Howard & Stokes [Acta Cryst. B (1998). 54, 782-789]. Ubiquity of dynamical tilting is demonstrated by an analysis of the structural data for perovskites reported in recent scientific publications and the signature of dynamic tilting in the corresponding structures is discussed, which can be summarized as follows: (a) volume increase upon a lowering of temperature, (b) apparent distortion of octahedra (where Jahn-Teller distortions can be ruled out), (c) mismatch between observed instantaneous symmetry and average symmetry, (d) deviation of the experimental space group from the theoretically predicted structures for static tilting, (e) inconsistency of lattice parameters with those suggested by the theory of static tilts, and (f) large displacement parameters for atoms at the X and B sites. Finally, the possible influence of dynamic disorder on the physical properties of halide perovskites is discussed

Proposed methods for estimating loss of saleable milk in a cow-calf contact system with automatic milking

Cow-calf contact (CCC) systems, although beneficial in many respects, introduce additional challenges to collect reliable data on milk production, which is important to assess individual cow efficiency and dairy farm profitability. Apart from weighing calves before and after each feeding, the amount of saleable milk lost due to calf suckling is practically impossible to measure. Here, we assess 2 indirect methods for estimating loss of saleable milk when housing cows and calves together in a robotic milking unit. In our study, treatment (CCC) cows and calves were kept together full time until the calves were 127 ± 6.6 d old (mean ± SD). Control cows were separated from their calves within 12 h of birth and then kept in the same unit as the treatment cows but with no access to either their own or treatment calves. Milk yield recording of both groups was performed from calving until pasture release at 233 ± 20 d in milk. The first estimation method relied on observed postseparation milk yield data, which were fed into a modified Wilmink regression model to determine the best-fitting lactation curve for the preseparation period. The second method was based on the cows' daily energy intake postseparation, calculated by measuring the daily feed intake and analyzing the energy content of the ration. The calculated energy intake was used to determine the average ratio between energy intake and the observed milk yield the following day for each individual cow, assuming constant rates of mobilization and deposition of body fat. The obtained ratio was then used to calculate the expected daily milk yield based on daily energy intake data during the preseparation period. In this paper, we analyzed data from 17 CCC cows kept together with their calves and 16 control cows; both groups calved from September to October 2020 and were followed up until release to pasture in May 2021. Saleable milk yield was lower in CCC cows than in control cows, both before and after separation. The 2 methods were used on data for control cows and showed milk yield loss using the lactation curve method (average of −3.4 ± 2.8 kg/d) and almost no loss using energy intake data (average of −1.4 ± 2.7 kg/d). Milk yield loss for CCC cows was estimated at average 11.3 ± 4.8 and 7.3 ± 6.6 kg milk/d, respectively. The proposed lactation curve estimation method tends to overestimate milk yield loss, whereas the method based on energy intake is more accurate. However, collecting detailed energy intake data per individual cow requires additional effort and equipment, which is not always feasible on commercial farms. Further research is needed to improve milk loss estimation and to better understand trade-offs in CCC systems

SEMICONDUCTOR LASER PROPERTY TO FORM INTERRUPTING RADIATION AT THE MOMENT OF SWITCHING ON AND SWITCHING OFF OF THE PUMPING ELECTRIC CURRENT

Semiconductor laser property to form interrupting radiation at the moment of switching on and switching off of the pumping electric current, belonging to a field of semiconductor lasers physics is described. An amplitude modulation of radiation during the moments of switching of a pumping electric current has coherent character. The average period of fluctuations is determined by tens femtoseconds, the whole process duration is some tens picoseconds. The device can be used for the noncontact highspeed precision control of geometrical parameters of the items, various defects definition in optically transparent products. The result of the research is a basis for new directions in a laser tomography, the measuring technique, use of this property will essentially simplify laser and fiber-optical gyroscopes

Role of lone-pair electron localization in temperature-induced phase transitions in mimetite.

The crystal structure of mimetite Pb5(AsO4)3Cl, a phosphate with apatite structure-type has been investigated in situ at 123, 173, 273, 288, 353 and 393 K. A careful inspection of the diffraction pattern and subsequent structure refinements indicated that mimetite transforms from the monoclinic to the hexagonal polymorph with increasing temperature. At 123 K, a monoclinic superstructure, mimetite-2M, with cell parameters a = 20.4487 (9),  b = 7.4362 (2), c = 20.4513 (9) Å, β = 119.953 (6)°, V = 2694.5 (2) Å3 and space group P21 was observed. From 173 to 353 K, the reflections of the supercell were evident only along one direction of the corresponding hexagonal apatite-cell and the structure transforms to the polymorph mimetite-M with space group P21/b and unit-cell parameters a = 10.2378 (3), b = 20.4573 (7), c = 7.4457 (2) Å, β = 120.039 (5)°, V = 1349.96 (9) Å3. Only at higher temperature, i.e. 393 K, does mimetite adopt the hexagonal space group P63/m characteristic of apatite structure-types. The role of the electron lone pairs of Pb atoms in the phase transition was investigated through the analysis of the electron localization function (ELF) calculated based on the DFT-geometry optimized structures of the three polymorphs. The changes in spatial distribution of the 6s2 electron density during the phase transitions were explored by means of the Wannier Function Centres (WFCs) derived from ab initio molecular dynamics trajectories. In the high-temperature hexagonal structure the 6s2 electrons are spherically symmetric relative to the position of Pb atoms. At low temperature the maximum of 6s2 electron density is displaced relative to the position of Pb atom contributing to the polar interaction in the monoclinic polymorphs