The radio properties of the OH megamaser galaxy IRAS 02524+2046

We present results from VLBI observations of continuum and OH line emission in IRAS 02524+2046 and also arcsecond-scale radio properties of this galaxy using VLA archive data. We found that there is no significant detection of radio continuum emission from VLBI observations. The arcsecond-scale radio images of this source show no clear extended emission, the total radio flux density at L and C band are around 2.9 mJy and 1.0 mJy respectively, which indicate a steep radio spectral index between the two band. Steep spectral index, low brightness temperature and high $q$-ratio (the FIR to the radio flux density), which are three critical indicators in classification of radio activity in the nuclei of galaxies, are all consistent with the classification of this source as a starburst galaxy from its optical spectrum. The high-resolution line profile show that both of \textbf{the 1665 and 1667 MHz OH maser} line have been detected which show three and two clear components respectively. The channel maps show that the maser emission are distributed in a region $\sim$ 210 pc $\times$ 90 pc, the detected maser components at different region show similar double spectral feature, which might be an evidence that this galaxy is at a stage of major merger as seen from the optical morphology.Comment: 13pages,9 figures, accepted by A&

Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data

Background: The genome of the fission yeast Schizosaccharomyces pombe has recently been sequenced, setting the stage for the post-genomic era of this increasingly popular model organism. We have built fission yeast microarrays, optimised protocols to improve array performance, and carried out experiments to assess various characteristics of microarrays.|Results: We designed PCR primers to amplify specific probes (180-500 bp) for all known and predicted fission yeast genes, which are printed in duplicate onto separate regions of glass slides together with control elements (similar to13,000 spots/slide). Fluorescence signal intensities depended on the size and intragenic position of the array elements, whereas the signal ratios were largely independent of element properties. Only the coding strand is covalently linked to the slides, and our array elements can discriminate transcriptional direction. The microarrays can distinguish sequences with up to 70% identity, above which cross-hybridisation contributes to the signal intensity. We tested the accuracy of signal ratios and measured the reproducibility of array data caused by biological and technical factors. Because the technical variability is lower, it is best to use samples prepared from independent biological experiments to obtain repeated measurements with swapping of fluorochromes to prevent dye bias. We also developed a script that discards unreliable data and performs a normalization to correct spatial artefacts.|Conclusions: This paper provides data for several microarray properties that are rarely measured. The results define critical parameters for microarray design and experiments and provide a framework to optimise and interpret array data. Our arrays give reproducible and accurate expression ratios with high sensitivity. The scripts for primer design and initial data processing as well as primer sequences and detailed protocols are available from our website.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1

In eukaryotic cells, Mtf1 and its homologues function as mitochondrial transcription factors for the mitochondrial RNA polymerase in the mitochondrion. Here we show that in fission yeast Mtf1 exerts a non-mitochondrial function as a nuclear factor that regulates transcription of srk1, which is a kinase involved in the stress response and cell cycle progression. We first found Mtf1 expression in the nucleus. A ChIP-chip approach identified srk1 as a putative Mtf1 target gene. Over expression of Mtf1 induced transcription of the srk1 gene and Mtf1 deletion led to a reduction in transcription of the srk1 gene in vivo. Mtf1 overexpression causes cell elongation in a srk1 dependent manner. Mtf1 overexpression can cause cytoplasmic accumulation of Cdc25. We also provide biochemical evidence that Mtf1 binds to the upstream sequence of srk1. This is the first evidence that a mitochondrial transcription factor Mtf1 can regulate a nuclear gene. Mtf1 may also have a role in cell cycle progression

Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe

We have characterized the mitochondrial transcription factor (Mtf1) and RNA polymerase (Rpo41) of Schizosaccharomyces pombe. Deletion mutants show Mtf1 or Rpo41 to be essential for cell growth, cell morphology and mitochondrial membrane potential. Overexpression of Mtf1 and Rpo41 can induce mitochondrial transcription. Mtf1 and Rpo41 can bind and transcribe mitochondrial promoters in vitro and the initiating nucleotides were the same in vivo and in vitro. Mtf1 is required for efficient transcription. We discuss the functional differences between Mtf1 and Rpo41 of S. pombe with Saccharomyces cerevisiae and higher organisms. In contrast to S. cerevisiae, the established model for mitochondrial transcription, S. pombe, a petite-negative yeast, resembles higher organisms that cannot tolerate the loss of mitochondrial function. The S. pombe and human mitochondrial genomes are similar in size and much smaller than that of S. cerevisiae. This is an important first step in the development of S. pombe as an alternative and complementary model system for molecular genetic and biochemical studies of mitochondrial transcription and mitochondrial–nuclear interactions. This is the first systematic study of the cellular function and biochemistry of Rpo41 and Mtf1 in S. pombe

Abnormalities of White Matter Microstructure in Unmedicated Obsessive-Compulsive Disorder and Changes after Medication

BACKGROUND: Abnormalities of myelin integrity have been reported in obsessive-compulsive disorder (OCD) using multi-parameter maps of diffusion tensor imaging (DTI). However, it was still unknown to what degree these abnormalities might be affected by pharmacological treatment. OBJECTIVE: To investigate whether the abnormalities of white matter microstructure including myelin integrity exist in OCD and whether they are affected by medication. METHODOLOGY AND PRINCIPAL FINDINGS: Parameter maps of DTI, including fractional anisotropy (FA), axial diffusivity (AD), radial diffusivity (RD) and mean diffusivity (MD), were acquired from 27 unmedicated OCD patients (including 13 drug-naïve individuals) and 23 healthy controls. Voxel-based analysis was then performed to detect regions with significant group difference. We compared the DTI-derived parameters of 15 patients before and after 12-week Selective Serotonin Reuptake Inhibitor (SSRI) therapies. Significant differences of DTI-derived parameters were observed between OCD and healthy groups in multiple structures, mainly within the fronto-striato-thalamo-cortical loop. An increased RD in combination with no change in AD among OCD patients was found in the left medial superior frontal gyrus, temporo-parietal lobe, occipital lobe, striatum, insula and right midbrain. There was no statistical difference in DTI-derived parameters between drug-naive and previously medicated OCD patients. After being medicated, OCD patients showed a reduction in RD of the left striatum and right midbrain, and in MD of the right midbrain. CONCLUSION: Our preliminary findings suggest that abnormalities of white matter microstructure, particularly in terms of myelin integrity, are primarily located within the fronto-striato-thalamo-cortical circuit of individuals with OCD. Some abnormalities may be partly reversed by SSRI treatment

Why are some BL Lacertaes detected by Fermi, but others not?

By cross-correlating an archival sample of 170 BL Lacs with a 2 year Fermi/LAT AGN sample, we have compiled a sample of 100 BL Lacs with Fermi detection (FBLs) and a sample of 70 non-Fermi BL Lacs (NFBLs). We compared various parameters of FBLs with those of NFBLs, including the redshift, the low-frequency radio luminosity at 408 MHz (L-408 MHz), the absolute magnitude of host galaxies (M-host), the polarization fraction from the NVSS survey (P-NVSS), the observed arcsecond scale radio core flux at 5 GHz (F-core), and the jet Doppler factor. All these parameters are directly measured or derived from available data in the literature. We found that the Doppler factor is on average greater in FBLs than in NFBLs, and the Fermi gamma-ray detection rate is higher in sources with higher Doppler factor. In contrast, there are no significant differences in terms of the intrinsic parameters of redshift, L-408 MHz, M-host, and P-NVSS. FBLs seem to have a higher probability of exhibiting measurable proper motion. These results strongly indicate a stronger beaming effect in FBLs compared to NFBLs. The radio core flux is found to be strongly correlated with gamma-ray flux, which remains after excluding the common dependence of the Doppler factor. At the fixed Doppler factor, FBLs have systematically larger radio core flux than NFBLs, implying lower gamma-ray emission in NFBLs since the radio and gamma-ray flux are significantly correlated. Our results indicate that the Doppler factor is an important parameter of gamma-ray detection, that the non-detection of gamma-ray emission in NFBLs is probably due to low beaming and/or low intrinsic gamma-ray flux, and the gamma-rays are very likely produced cospatially with the arcsecond-scale radio core radiation and mainly through the SSC process

Downregulation of Aquaporin 3 Mediated the Laxative Effect in the Rat Colon by a Purified Resin Glycoside Fraction from Pharbitis Semen

Background. Pharbitis Semen, the seeds of Pharbitis nil, is widely used as a traditional purgative medicine in China, Korea, and Japan. This study investigated the laxative effects of a purified resin glycoside fraction obtained in our previous study from Pharbitis Semen in vivo and in vitro. Materials and Methods. After orally administering a purified resin glycoside fraction from Pharbitis Semen (RFP) to rats, the content of fecal water, AQP3, NF-κB, COX-2 expression, and the prostaglandin E2 (PGE2) concentrations in the colon were examined. Moreover, human intestinal epithelial cells (HT-29) were used to investigate the mechanism of RFP decreasing the AQP3 expression. Results. Results obtained showed that treatment with RFP increased the feces excretion and fecal water content of rats in a dose-dependent manner. More interestingly, AQP3 expression was suppressed by RFP treatment both in the rat colons and in HT-29 cells, while the NF-κB pathway-mediated PGE2 production was activated. Interestingly, pretreating rats with BAY-11-7082 (NF-κB inhibitor) or indomethacin (COX-2 inhibitor) and RFP neither induced diarrhea nor decreased the AQP3 expression in the colon. Conclusions. The purgative property of the purified resin glycoside fraction was attributed to NF-κB activation in the colon, which increased the COX-2-mediated secretion of PGE2. PGE2 decreased AQP3 expression which inhibits water absorbed from the intestine to the blood vessel side, resulting in the laxative effect of RFP

Radiation Emitter Classification and Identification Approach Based on Radiation Emission Components

An electronic system generates a large number of intended or unintended electromagnetic radiated emissions in its operating state, which can lead to potential electromagnetic compatibility (EMC) problems. To avoid the impact of these electromagnetic radiation emissions on the surrounding electronic equipment or systems, it is necessary to classify and identify these radiation emitters. In this paper, we proposed a systematic approach for radiation emitter classification and identification based on radiation emission components. Inspired by the basic emission waveform theory (BEWT), the radiation emission data of electronic systems are decomposed into three kinds of radiation emission components, and the different groups of radiation emission data can be classified or identified according to the similarity of these radiation emission components. The radiation emission (RE) spectral data of several kinds of electronic equipment, such as laptops and digital cameras, were used to verify the proposed method. The classification and identification accuracy for data corresponding to different kinds of radiation emission spectra was about 99%, which confirmed the effectiveness of this method

Translational Bioinformatics for Diagnostic and Prognostic Prediction of Prostate Cancer in the Next-Generation Sequencing Era

The discovery of prostate cancer biomarkers has been boosted by the advent of next-generation sequencing (NGS) technologies. Nevertheless, many challenges still exist in exploiting the flood of sequence data and translating them into routine diagnostics and prognosis of prostate cancer. Here we review the recent developments in prostate cancer biomarkers by high throughput sequencing technologies. We highlight some fundamental issues of translational bioinformatics and the potential use of cloud computing in NGS data processing for the improvement of prostate cancer treatment