Effects of polyploidy on female call preference in gray treefrogs, Hyla chrysoscelis

Abstract only availableThe gray treefrog complex consists of two cryptic species; Hyla versicolor is a tetraploid (N=48) species that arose from the polyploidization of its diploid counter-part, H. chrysoscelis (N=24) and two other extinct treefrog species. Speciation via polyploidy is almost instantaneous because polyploid species are isolated reproductively from their non-polyploid ancestors. However, the establishment of newly arisen polyploid lineages requires assortative mating between polyploids. Genome duplication has been shown to affect the quality of the male's species-specific mate-attraction signal, thus polyploids could be reproductively isolated from their diploid ancestors through the action of female mating preferences. Autopolyploid individuals I generated last summer (polyploidy was verified by initial karyotyping) are currently reaching sexual maturity. Once sexually mature, the acoustic mate-choice preferences of female polyploids will be tested using playback experiments. The experimental tests will compare preferences for call traits that vary between the two species, including frequency, pulse shape, and pulse rate. We hypothesize that these changes in the communication system result from ploidy-induced changes in tissue and cellular dimensions. Thus, as a related experiment, we will also look for effects of larval density on blood cell size, male calls and female preferences. We expect to find that polyploidy affects the advertisement-call preferences of female H. chrysoscelis treefrogs, independent of other factors. Preliminary results indicate that autopolyploid individuals are able to reach sexual maturity and that there is an effect of polyploidy on blood cell size.Life Sciences Undergraduate Research Opportunity Progra

Jamming in Systems Composed of Frictionless Ellipse-Shaped Particles

We study the structural and mechanical properties of jammed ellipse packings, and find that the nature of the jamming transition in these systems is fundamentally different from that for spherical particles. Ellipse packings are generically hypostatic with more degrees of freedom than constraints. The spectra of low energy excitations possess two gaps and three distinct branches over a range of aspect ratios. In the zero compression limit, the energy of the modes in the lowest branch increases {\it quartically} with deformation amplitude, and the density of states possesses a $\delta$-function at zero frequency. We identify scaling relations that collapse the low-frequency part of the spectra for different aspect ratios. Finally, we find that the degree of hypostaticity is determined by the number of quartic modes of the packing.Comment: 4 pages, 4 figure

Chiasma

Newspaper reporting on events at the Boston University School of Medicine in the 1960s

Restoration of critically endangered elkhorn coral (Acropora palmata) populations using larvae reared from wild-caught gametes

AbstractElkhorn coral (Acropora palmata) populations provide important ecological functions on shallow Caribbean reefs, many of which were lost when a disease reduced their abundance by more than 95% beginning in the mid-1970s. Since then, a lack of significant recovery has prompted rehabilitation initiatives throughout the Caribbean. Here, we report the first successful outplanting and long-term survival of A. palmata settlers reared from gametes collected in the field. A. palmata larvae were settled on clay substrates (substrate units) and either outplanted on the reef two weeks after settlement or kept in a land-based nursery. After 2.5 years, the survival rate of A. palmata settlers outplanted two weeks after settlement was 6.8 times higher (3.4%) than that of settlers kept in a land-based nursery (0.5%). Furthermore, 32% of the substrate units on the reef still harbored one or more well-developed recruit compared to 3% for substrate units kept in the nursery. In addition to increasing survival, outplanting A. palmata settlers shortly after settlement reduced the costs to produce at least one 2.5-year-old A. palmata individual from $325 to$13 USD. Thus, this study not only highlights the first successful long-term rearing of this critically endangered coral species, but also shows that early outplanting of sexually reared coral settlers can be more cost-effective than the traditional approach of nursery rearing for restoration efforts aimed at rehabilitating coral populations

Constraints and vibrations in static packings of ellipsoidal particles

We numerically investigate the mechanical properties of static packings of ellipsoidal particles in 2D and 3D over a range of aspect ratio and compression $\Delta \phi$. While amorphous packings of spherical particles at jamming onset ($\Delta \phi=0$) are isostatic and possess the minimum contact number $z_{\rm iso}$ required for them to be collectively jammed, amorphous packings of ellipsoidal particles generally possess fewer contacts than expected for collective jamming ($z < z_{\rm iso}$) from naive counting arguments, which assume that all contacts give rise to linearly independent constraints on interparticle separations. To understand this behavior, we decompose the dynamical matrix $M=H-S$ for static packings of ellipsoidal particles into two important components: the stiffness $H$ and stress $S$ matrices. We find that the stiffness matrix possesses $N(z_{\rm iso} - z)$ eigenmodes ${\hat e}_0$ with zero eigenvalues even at finite compression, where $N$ is the number of particles. In addition, these modes ${\hat e}_0$ are nearly eigenvectors of the dynamical matrix with eigenvalues that scale as $\Delta \phi$, and thus finite compression stabilizes packings of ellipsoidal particles. At jamming onset, the harmonic response of static packings of ellipsoidal particles vanishes, and the total potential energy scales as $\delta^4$ for perturbations by amplitude $\delta$ along these `quartic' modes, ${\hat e}_0$. These findings illustrate the significant differences between static packings of spherical and ellipsoidal particles.Comment: 18 pages, 21 figure

2003 Manifesto on the California Electricity Crisis

The authors, an ad-hocgroup of professionals with experience in regulatory and energy economics, share a common concern with the continuing turmoil facing the electricity industry ("the industry") in California. Most ofthe authorsendorsed the first California Electricity Manifesto issued on January 25, 2001. Almost two years have passed since that first Manifesto. While wholesale electric prices have moderated and California no longer faces the risk of blackouts, in many ways the industry is in worse shape now than it was at the start of 2001. As a result, the group of signatories continues to have a deep concern with the conflicting policy directions being pursued for the industry at both the State and Federal levels of government and the impact the uncertainties associated with these conflicting policies will have, long term, on the economy of California. Theauthorshave once again convened under the auspices of the Institute of Management, Innovation and Organization at the University of California, Berkeley, to put forward ourtheir ideas on a basic set of necessary policies to move the industry forward for the benefit of all Californians and the nation. The authors point out that theydo not pretend to be "representative." They do bring, however, a very diverse range of backgrounds and expertise.Technology and Industry, Regulatory Reform

The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks.

Nosocomial severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections have severely affected bed capacity and patient flow. We utilized whole-genome sequencing (WGS) to identify outbreaks and focus infection control resources and intervention during the United Kingdom's second pandemic wave in late 2020. Phylogenetic analysis of WGS and epidemiological data pinpointed an initial transmission event to an admission ward, with immediate prior community infection linkage documented. High incidence of asymptomatic staff infection with genetically identical viral sequences was also observed, which may have contributed to the propagation of the outbreak. WGS allowed timely nosocomial transmission intervention measures, including admissions ward point-of-care testing and introduction of portable HEPA14 filters. Conversely, WGS excluded nosocomial transmission in 2 instances with temporospatial linkage, conserving time and resources. In summary, WGS significantly enhanced understanding of SARS-CoV-2 clusters in a hospital setting, both identifying high-risk areas and conversely validating existing control measures in other units, maintaining clinical service overall

Applying Himawari-8 and JPSS Satellite Products for Forecasting Hurricane-Force Wind Events

No abstract availabl

Predicting crop yields and soil‐plant nitrogen dynamics in the US Corn Belt

We used the Agricultural Production Systems sIMulator (APSIM) to predict and explain maize and soybean yields, phenology, and soil water and nitrogen (N) dynamics during the growing season in Iowa, USA. Historical, current and forecasted weather data were used to drive simulations, which were released in public four weeks after planting. In this paper, we (1) describe the methodology used to perform forecasts; (2) evaluate model prediction accuracy against data collected from 10 locations over four years; and (3) identify inputs that are key in forecasting yields and soil N dynamics. We found that the predicted median yield at planting was a very good indicator of end‐of‐season yields (relative root mean square error [RRMSE] of ∼20%). For reference, the prediction at maturity, when all the weather was known, had a RRMSE of 14%. The good prediction at planting time was explained by the existence of shallow water tables, which decreased model sensitivity to unknown summer precipitation by 50–64%. Model initial conditions and management information accounted for one‐fourth of the variation in maize yield. End of season model evaluations indicated that the model simulated well crop phenology (R2 = 0.88), root depth (R2 = 0.83), biomass production (R2 = 0.93), grain yield (R2 = 0.90), plant N uptake (R2 = 0.87), soil moisture (R2 = 0.42), soil temperature (R2 = 0.93), soil nitrate (R2 = 0.77), and water table depth (R2 = 0.41). We concluded that model set‐up by the user (e.g. inclusion of water table), initial conditions, and early season measurements are very important for accurate predictions of soil water, N and crop yields in this environment

The Long-Baseline Neutrino Experiment: Exploring Fundamental Symmetries of the Universe

The preponderance of matter over antimatter in the early Universe, the dynamics of the supernova bursts that produced the heavy elements necessary for life and whether protons eventually decay --- these mysteries at the forefront of particle physics and astrophysics are key to understanding the early evolution of our Universe, its current state and its eventual fate. The Long-Baseline Neutrino Experiment (LBNE) represents an extensively developed plan for a world-class experiment dedicated to addressing these questions. LBNE is conceived around three central components: (1) a new, high-intensity neutrino source generated from a megawatt-class proton accelerator at Fermi National Accelerator Laboratory, (2) a near neutrino detector just downstream of the source, and (3) a massive liquid argon time-projection chamber deployed as a far detector deep underground at the Sanford Underground Research Facility. This facility, located at the site of the former Homestake Mine in Lead, South Dakota, is approximately 1,300 km from the neutrino source at Fermilab -- a distance (baseline) that delivers optimal sensitivity to neutrino charge-parity symmetry violation and mass ordering effects. This ambitious yet cost-effective design incorporates scalability and flexibility and can accommodate a variety of upgrades and contributions. With its exceptional combination of experimental configuration, technical capabilities, and potential for transformative discoveries, LBNE promises to be a vital facility for the field of particle physics worldwide, providing physicists from around the globe with opportunities to collaborate in a twenty to thirty year program of exciting science. In this document we provide a comprehensive overview of LBNE's scientific objectives, its place in the landscape of neutrino physics worldwide, the technologies it will incorporate and the capabilities it will possess.Comment: Major update of previous version. This is the reference document for LBNE science program and current status. Chapters 1, 3, and 9 provide a comprehensive overview of LBNE's scientific objectives, its place in the landscape of neutrino physics worldwide, the technologies it will incorporate and the capabilities it will possess. 288 pages, 116 figure