168 research outputs found
Power Laws, Precursors and Predictability During Failure
We investigate the dynamics of a modified Burridge-Knopoff model by
introducing a dissipative term to mimic the bursts of acoustic emission (AE)
from rock samples. The model explains many features of the statistics of AE
signals observed in experiments such as the crossover in the exponent value
from relatively small amplitude AE signals to larger regime, and their
dependence on the pulling speed. Significantly, we find that the cumulative
energy dissipated identified with acoustic emission can be used to predict a
major slip event. We also find a data collapse of the acoustic activity for
several major slip events describable by a universal stretched exponential with
corrections in terms of time-to-failure.Comment: 7 pages, 6 figures, Final version with minor change
Properties of Foreshocks and Aftershocks of the Non-Conservative SOC Olami-Feder-Christensen Model: Triggered or Critical Earthquakes?
Following Hergarten and Neugebauer [2002] who discovered aftershock and
foreshock sequences in the Olami-Feder-Christensen (OFC) discrete block-spring
earthquake model, we investigate to what degree the simple toppling mechanism
of this model is sufficient to account for the properties of earthquake
clustering in time and space. Our main finding is that synthetic catalogs
generated by the OFC model share practically all properties of real seismicity
at a qualitative level, with however significant quantitative differences. We
find that OFC catalogs can be in large part described by the concept of
triggered seismicity but the properties of foreshocks depend on the mainshock
magnitude, in qualitative agreement with the critical earthquake model and in
disagreement with simple models of triggered seismicity such as the Epidemic
Type Aftershock Sequence (ETAS) model [Ogata, 1988]. Many other features of OFC
catalogs can be reproduced with the ETAS model with a weaker clustering than
real seismicity, i.e. for a very small average number of triggered earthquakes
of first generation per mother-earthquake.Comment: revtex, 19 pages, 8 eps figure
On the Occurrence of Finite-Time-Singularities in Epidemic Models of Rupture, Earthquakes and Starquakes
We present a new kind of critical stochastic finite-time-singularity, relying
on the interplay between long-memory and extreme fluctuations. We illustrate it
on the well-established epidemic-type aftershock (ETAS) model for aftershocks,
based solely on the most solidly documented stylized facts of seismicity
(clustering in space and in time and power law Gutenberg-Richter distribution
of earthquake energies). This theory accounts for the main observations (power
law acceleration and discrete scale invariant structure) of critical rupture of
heterogeneous materials, of the largest sequence of starquakes ever attributed
to a neutron star as well as of earthquake sequences.Comment: Revtex document of 4 pages including 1 eps figur
The critical earthquake concept applied to mine rockbursts with time-to-failure analysis
We report new tests of the critical earthquake concepts performed on
rockbursts in deep South African mines. We extend the concept of an optimal
time and space correlation region and test it on the eight main shocks of our
catalog provided by ISSI. In a first test, we use the simplest signature of
criticality in terms of a power law time-to-failure formula. Notwithstanding
the fact that the search for the optimal correlation size is performed with
this simple power law, we find evidence both for accelerated seismicity and for
the presence of logperiodic behavior with a prefered scaling factor close to 2.
We then propose a new algorithm based on a space and time smoothing procedure,
which is also intended to account for the finite range and time mechanical
interactions between events. This new algorithm provides a much more robust and
efficient construction of the optimal correlation region, which allows us the
use of the logperiodic formula directly in the search process. In this
preliminary work, we have only tested the new algorithm on the largest event on
the catalog. The result is of remarkable good quality with a dramatic
improvement in accuracy and robustness. This confirms the potential importance
of logperiodic signals. Our study opens the road for an efficient implemention
of a systematic testing procedure of real-time predictions.Comment: 22 pages, 32 figure
Dragon-kings: mechanisms, statistical methods and empirical evidence
This introductory article presents the special Discussion and Debate volume
"From black swans to dragon-kings, is there life beyond power laws?" published
in Eur. Phys. J. Special Topics in May 2012. We summarize and put in
perspective the contributions into three main themes: (i) mechanisms for
dragon-kings, (ii) detection of dragon-kings and statistical tests and (iii)
empirical evidence in a large variety of natural and social systems. Overall,
we are pleased to witness significant advances both in the introduction and
clarification of underlying mechanisms and in the development of novel
efficient tests that demonstrate clear evidence for the presence of
dragon-kings in many systems. However, this positive view should be balanced by
the fact that this remains a very delicate and difficult field, if only due to
the scarcity of data as well as the extraordinary important implications with
respect to hazard assessment, risk control and predictability.Comment: 20 page
Subtropical grass pollen allergens are important for allergic respiratory diseases in subtropical regions
Background: Grass pollen allergens are a major cause of allergic respiratory disease but traditionally prescribing practice for grass pollen allergen-specific immunotherapy has favoured pollen extracts of temperate grasses. Here we aim to compare allergy to subtropical and temperate grass pollens in patients with allergic rhinitis from a subtropical region of Australia. Methods. Sensitization to pollen extracts of the subtropical Bahia grass (Paspalum notatum), Johnson grass (Sorghum halepense) and Bermuda grass (Cynodon dactylon) as well as the temperate Ryegrass (Lolium perenne) were measured by skin prick in 233 subjects from Brisbane. Grass pollen-specific IgE reactivity was tested by ELISA and cross-inhibition ELISA. Results: Patients with grass pollen allergy from a subtropical region showed higher skin prick diameters with subtropical Bahia grass and Bermuda grass pollens than with Johnson grass and Ryegrass pollens. IgE reactivity was higher with pollen of Bahia grass than Bermuda grass, Johnson grass and Ryegrass. Patients showed asymmetric cross-inhibition of IgE reactivity with subtropical grass pollens that was not blocked by temperate grass pollen allergens indicating the presence of species-specific IgE binding sites of subtropical grass pollen allergens that are not represented in temperate grass pollens. Conclusions: Subtropical grass pollens are more important allergen sources than temperate grass pollens for patients from a subtropical region. Targeting allergen-specific immunotherapy to subtropical grass pollen allergens in patients with allergic rhinitis in subtropical regions could improve treatment efficacy thereby reducing the burden of allergic rhinitis and asthma
Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma
Asthma is caused by a combination of poorly understood genetic and environmental factors(1,2). We have systematically mapped the effects of single nucleotide polymorphisms ( SNPs) on the presence of childhood onset asthma by genome-wide association. We characterized more than 317,000 SNPs in DNA from 994 patients with childhood onset asthma and 1,243 non-asthmatics, using family and case-referent panels. Here we show multiple markers on chromosome 17q21 to be strongly and reproducibly associated with childhood onset asthma in family and case-referent panels with a combined P value of P < 10(-12). In independent replication studies the 17q21 locus showed strong association with diagnosis of childhood asthma in 2,320 subjects from a cohort of German children (P=0.0003) and in 3,301 subjects from the British 1958 Birth Cohort (P=0.0005). We systematically evaluated the relationships between markers of the 17q21 locus and transcript levels of genes in Epstein - Barr virus (EBV)-transformed lymphoblastoid cell lines from children in the asthma family panel used in our association study. The SNPs associated with childhood asthma were consistently and strongly associated (P < 10(-22)) in cis with transcript levels of ORMDL3, a member of a gene family that encodes transmembrane proteins anchored in the endoplasmic reticulum(3). The results indicate that genetic variants regulating ORMDL3 expression are determinants of susceptibility to childhood asthma.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/62682/1/nature06014.pd
Insights into the Binding of Phenyltiocarbamide (PTC) Agonist to Its Target Human TAS2R38 Bitter Receptor
Humans' bitter taste perception is mediated by the hTAS2R subfamily of the G protein-coupled membrane receptors (GPCRs). Structural information on these receptors is currently limited. Here we identify residues involved in the binding of phenylthiocarbamide (PTC) and in receptor activation in one of the most widely studied hTAS2Rs (hTAS2R38) by means of structural bioinformatics and molecular docking. The predictions are validated by site-directed mutagenesis experiments that involve specific residues located in the putative binding site and trans-membrane (TM) helices 6 and 7 putatively involved in receptor activation. Based on our measurements, we suggest that (i) residue N103 participates actively in PTC binding, in line with previous computational studies. (ii) W99, M100 and S259 contribute to define the size and shape of the binding cavity. (iii) W99 and M100, along with F255 and V296, play a key role for receptor activation, providing insights on bitter taste receptor activation not emerging from the previously reported computational models
The neural processing of taste
Although there have been many recent advances in the field of gustatory neurobiology, our knowledge of how the nervous system is organized to process information about taste is still far from complete. Many studies on this topic have focused on understanding how gustatory neural circuits are spatially organized to represent information about taste quality (e.g., "sweet", "salty", "bitter", etc.). Arguments pertaining to this issue have largely centered on whether taste is carried by dedicated neural channels or a pattern of activity across a neural population. But there is now mounting evidence that the timing of neural events may also importantly contribute to the representation of taste. In this review, we attempt to summarize recent findings in the field that pertain to these issues. Both space and time are variables likely related to the mechanism of the gustatory neural code: information about taste appears to reside in spatial and temporal patterns of activation in gustatory neurons. What is more, the organization of the taste network in the brain would suggest that the parameters of space and time extend to the neural processing of gustatory information on a much grander scale
Analysis of the Effects of Polymorphism on Pollen Profilin Structural Functionality and the Generation of Conformational, T- and B-Cell Epitopes
An extensive polymorphism analysis of pollen profilin, a fundamental regulator of the actin cytoskeleton dynamics, has been performed with a major focus in 3D-folding maintenance, changes in the 2-D structural elements, surface residues involved in ligands-profilin interactions and functionality, and the generation of conformational and lineal B- and T-cell epitopes variability.
Our results revealed that while the general fold is conserved among profilins, substantial structural differences were found, particularly affecting the special distribution and length of different 2-D structural elements (i.e. cysteine residues), characteristic loops and coils, and numerous micro-heterogeneities present in fundamental residues directly involved in the interacting motifs, and to some extension these residues nearby to the ligand-interacting areas. Differential changes as result of polymorphism might contribute to generate functional variability among the plethora of profilin isoforms present in the olive pollen from different genetic background (olive cultivars), and between plant species, since biochemical interacting properties and binding affinities to natural ligands may be affected, particularly the interactions with different actin isoforms and phosphoinositides lipids species.
Furthermore, conspicuous variability in lineal and conformational epitopes was found between profilins belonging to the same olive cultivar, and among different cultivars as direct implication of sequences polymorphism. The variability of the residues taking part of IgE-binding epitopes might be the final responsible of the differences in cross-reactivity among olive pollen cultivars, among pollen and plant-derived food allergens, as well as between distantly related pollen species, leading to a variable range of allergy reactions among atopic patients. Identification and analysis of commonly shared and specific epitopes in profilin isoforms is essential to gain knowledge about the interacting surface of these epitopes, and for a better understanding of immune responses, helping design and development of rational and effective immunotherapy strategies for the treatment of allergy diseases. [EN]This study was supported by the following European Regional Development Fund co-financed grants: MCINN BFU 2004-00601/BFI, BFU 2008-00629, BFU2011-22779, CICE (Junta de AndalucĂa) P2010-CVI15767, P2010-AGR6274 and P2011-CVI-7487, and by the coordinated project Spain/Germany MEC HA2004-0094. JCJ-L thanks Spanish CSIC and the European Marie Curie research program for his I3P-BPD-CSIC, and PIOF-GA-2011-301550 grants, respectively.Peer reviewe
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