Alien Registration- Bouchard, Aurelie (Augusta, Kennebec County)

https://digitalmaine.com/alien_docs/18309/thumbnail.jp

funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types

Motivation: DNA methylation patterns are well known to vary substantially across cell types or tissues. Hence, existing normalization methods may not be optimal if they do not take this into account. We therefore present a new R package for normalization of data from the Illumina Infinium Human Methylation450 BeadChip (Illumina 450 K) built on the concepts in the recently published funNorm method, and introducing cell-type or tissue-type flexibility. Results: funtooNorm is relevant for data sets containing samples from two or more cell or tissue types. A visual display of cross-validated errors informs the choice of the optimal number of components in the normalization. Benefits of cell (tissue)-specific normalization are demonstrated in three data sets. Improvement can be substantial; it is strikingly better on chromosome X, where methylation patterns have unique inter-tissue variability. Availability and Implementation: An R package is available at https://github.com/GreenwoodLab/funtooNorm, and has been submitted to Bioconductor at http://bioconductor.org. Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online

Hyperspectral Earth observation from IASI: Five years of accomplishments

The Infrared Atmospheric Sounding Interferometer (IASI) forms the main infrared sounding component of the European Organisation for the Exploitation of Meteorological Satellites's (EUMETSAT's) Meteorological Operation (MetOp)-A satellite (Klaes et al. 2007), which was launched in October 2006. This article presents the results of the first 4 yr of the operational IASI mission. The performance of the instrument is shown to be exceptional in terms of calibration and stability. The quality of the data has allowed the rapid use of the observations in operational numerical weather prediction (NWP) and the development of new products for atmospheric chemistry and climate studies, some of which were unexpected before launch. The assimilation of IASI observations in NWP models provides a significant forecast impact; in most cases the impact has been shown to be at least as large as for any previous instrument. In atmospheric chemistry, global distributions of gases, such as ozone and carbon monoxide, can be produced in near–real time, and short-lived species, such as ammonia or methanol, can be mapped, allowing the identification of new sources. The data have also shown the ability to track the location and chemistry of gaseous plumes and particles associated with volcanic eruptions and fires, providing valuable data for air quality monitoring and aircraft safety. IASI also contributes to the establishment of robust long-term data records of several essential climate variables. The suite of products being developed from IASI continues to expand as the data are investigated, and further impacts are expected from increased use of the data in NWP and climate studies in the coming years. The instrument has set a high standard for future operational hyperspectral infrared sounders and has demonstrated that such instruments have a vital role in the global observing system