Exploring the Impact of Learning Paradigms on Network Generalization: A Multi-Center IMT Study

The intima-media thickness (IMT) is an important parameter for evaluating cardiovascular disease risk and progression and can be extracted from B-mode longitudinal ultrasound images of the carotid artery. Despite its clinical significance, inter- and intra-operator variability in IMT measurement is a challenge due to subjective factors. Therefore, automatic and semi-automatic approaches based on heuristic methods and deep neural networks have been proposed to reduce the variability in IMT measurement. However, the inter- and intra- operator variability still remains an issue as it affects the quality and diversity of ground truth (GT) data used for training deep learning models. In this study, the authors evaluate the performance of different learning paradigms using different GTs on a multi-center IMT dataset. A recent segmentation network, ConvNeXt, is trained on a dataset of 2576 B-mode longitudinal ultrasound images of the carotid artery, using different GT annotations and learning paradigms. The method is then tested on an external dataset of 448 images from four different centers for which three manual segmentations were available. The results show how the use of different GT annotations and learning paradigms can enhance the generalization ability of deep learning models, demonstrating the importance of selecting appropriate GT data and learning strategies in achieving robust and reliable solutions. The study highlights the significance of incorporating heuristic methods in the training process of deep learning models to enhance the accuracy and consistency of IMT measurement, thus enabling more precise cardiovascular disease risk assessment

Robustness Analysis of Texture Features with Different Beamforming Techniques

Texture features are often used on ultrasound images in various applications to give forth important clinical information. Recently, many beamforming techniques have been developed to provide better resolution and contrast in the final image. It is currently unknown, however, how these different techniques may also alter pixel intensity spatial distribution, known as texture. We provide here a robustness analysis of first and second order texture features using six beamforming techniques, on both phantom and in vivo musculoskeletal images. We show that second order texture features are more robust compared to first order features, especially when considering in vivo musculoskeletal images

Can multiple segmentation methods enhance deep learning networks generalization? A novel hybrid learning paradigm

Deep learning methods are the state-of-the-art for medical imaging segmentation tasks. Still, numerous segmentation algorithms based on heuristic-based methods have been proposed with exceptional results. To validate segmentation algorithms, manual annotations are typically considered as ground truth. However, manual annotations often suffer from inter/intra-operator variability and can also be occasionally inaccurate, especially when considering time-consuming and precise tasks. A sample case is the manual delineation of the lumen-intima (LI) and media-adventitia (MA) borders for intima-media thickness (IMT) measurement in B-mode ultrasound images. In this work, a novel hybrid learning paradigm which combines manual segmentations with the automatic segmentation of a dynamic programming technique for ground truth determination is presented. A profile consensus strategy is proposed to construct the hybrid ground truth. Two open-source datasets (n=2576) were employed for training four deep learning networks using the hybrid learning paradigm and three single source training targets as a comparison. The pipeline was fixed across the four tests and included a Faster R-CNN detection network to locate the carotid artery and then subsequent division into patches which were segmented using a UNet. The validation of the results was performed on an external test set comparing the predictions of the four different models to the annotations of three independent manual operators. The hybrid learning paradigm showed the best overall segmentation results (Dice=0.907±0.037, p<0.001) and demonstrated an exceptional correlation between the mean of three operators and the automatic measure (ICC(2,1)=0.958), demonstrating how the incorporation of heuristic-based segmentation methods within the learning paradigm of a deep neural network can enhance and improve final segmentation performance results

Automatic segmentation of the optic nerve in transorbital ultrasound images using a deep learning approach

Transorbital sonography is able to provide reliable information about (a) intra-cranial pressure estimation through the optic nerve sheath diameter (ONSD) measurement, and (b) optic nerve atrophy in patients with multiple sclerosis through the optic nerve diameter (OND). In this study, we present the first method for the automatic measurement of the OND and ONSD using a deep learning technique (UNet with ResNet50 encoder) for the optic nerve segmentation. The dataset included 201 images from 50 patients. The automated measurements were compared with manual ones obtained by one operator. The mean error was equal to 0.07 ± 0.34 mm and -0.07 ± 0.67 mm, for the OND and ONSD, respectively. The developed system should aid in standardizing OND and ONSD measurements and reduce manual evaluation variability

The impact of pre- and post-image processing techniques on deep learning frameworks: A comprehensive review for digital pathology image analysis

Recently, deep learning frameworks have rapidly become the main methodology for analyzing medical images. Due to their powerful learning ability and advantages in dealing with complex patterns, deep learning algorithms are ideal for image analysis challenges, particularly in the field of digital pathology. The variety of image analysis tasks in the context of deep learning includes classification (e.g., healthy vs. cancerous tissue), detection (e.g., lymphocytes and mitosis counting), and segmentation (e.g., nuclei and glands segmentation). The majority of recent machine learning methods in digital pathology have a pre- and/or post-processing stage which is integrated with a deep neural network. These stages, based on traditional image processing methods, are employed to make the subsequent classification, detection, or segmentation problem easier to solve. Several studies have shown how the integration of pre- and post-processing methods within a deep learning pipeline can further increase the model's performance when compared to the network by itself. The aim of this review is to provide an overview on the types of methods that are used within deep learning frameworks either to optimally prepare the input (pre-processing) or to improve the results of the network output (post-processing), focusing on digital pathology image analysis. Many of the techniques presented here, especially the post-processing methods, are not limited to digital pathology but can be extended to almost any image analysis field

The impact of pre- and post-image processing techniques on deep learning frameworks: A comprehensive review for digital pathology image analysis.

Recently, deep learning frameworks have rapidly become the main methodology for analyzing medical images. Due to their powerful learning ability and advantages in dealing with complex patterns, deep learning algorithms are ideal for image analysis challenges, particularly in the field of digital pathology. The variety of image analysis tasks in the context of deep learning includes classification (e.g., healthy vs. cancerous tissue), detection (e.g., lymphocytes and mitosis counting), and segmentation (e.g., nuclei and glands segmentation). The majority of recent machine learning methods in digital pathology have a pre- and/or post-processing stage which is integrated with a deep neural network. These stages, based on traditional image processing methods, are employed to make the subsequent classification, detection, or segmentation problem easier to solve. Several studies have shown how the integration of pre- and post-processing methods within a deep learning pipeline can further increase the model's performance when compared to the network by itself. The aim of this review is to provide an overview on the types of methods that are used within deep learning frameworks either to optimally prepare the input (pre-processing) or to improve the results of the network output (post-processing), focusing on digital pathology image analysis. Many of the techniques presented here, especially the post-processing methods, are not limited to digital pathology but can be extended to almost any image analysis field

Detecting anatomical characteristics of single motor units by combining high density electromyography and ultrafast ultrasound: a simulation study

Muscle force production is the result of a sequence of electromechanical events that translate the neural drive issued to the motor units (MUs) into tensile forces on the tendon. Current technology allows this phenomenon to be investigated non-invasively. Single MU excitation and its mechanical response can be studied through high-density surface electromyography (HDsEMG) and ultrafast ultrasound (US) imaging respectively. In this study, we propose a method to integrate these two techniques to identify anatomical characteristics of single MUs. Specifically, we tested two algorithms, combining the tissue velocity sequence (TVS, obtained from ultrafast US images), and the MU firings (extracted from HDsEMG decomposition). The first is the Spike Triggered Averaging (STA) of the TVS based on the occurrences of individual MU firings, while the second relies on the correlation between the MU firing patterns and the TVS spatio-temporal independent components (STICA). A simulation model of the muscle contraction was adapted to test the algorithms at different degrees of neural excitation (number of active MUs) and MU synchronization. The performances of the two algorithms were quantified through the comparison between the simulated and the estimated characteristics of MU territories (size, location). Results show that both approaches are negatively affected by the number of active MU and synchronization levels. However, STICA provides a more robust MU territory estimation, outperforming STA in all the tested conditions. Our results suggest that spatio-temporal independent component decomposition of TVS is a suitable approach for anatomical and mechanical characterization of single MUs using a combined HDsEMG and ultrafast US approach

Automatic segmentation and classification methods using optical coherence tomography angiography (Octa): A review and handbook

Optical coherence tomography angiography (OCTA) is a promising technology for the non-invasive imaging of vasculature. Many studies in literature present automated algorithms to quantify OCTA images, but there is a lack of a review on the most common methods and their comparison considering multiple clinical applications (e.g., ophthalmology and dermatology). Here, we aim to provide readers with a useful review and handbook for automatic segmentation and classification methods using OCTA images, presenting a comparison of techniques found in the literature based on the adopted segmentation or classification method and on the clinical application. Another goal of this study is to provide insight into the direction of research in automated OCTA image analysis, especially in the current era of deep learning

Impact of stain normalization and patch selection on the performance of convolutional neural networks in histological breast and prostate cancer classification

Background Recently, deep learning has rapidly become the methodology of choice in digital pathology image analysis. However, due to the current challenges of digital pathology (color stain variability, large images, etc.), specific pre-processing steps are required to train a reliable deep learning model. Method In this work, there are two main goals: i) present a fully automated pre-processing algorithm for a smart patch selection within histopathological images, and ii) evaluate the impact of the proposed strategy within a deep learning framework for the detection of prostate and breast cancer. The proposed algorithm is specifically designed to extract patches only on informative regions (i.e., high density of nuclei), most likely representative of where cancer can be detected. Results Our strategy was developed and tested on 1000 hematoxylin and eosin (H&E) stained images of prostate and breast tissue. By combining a stain normalization step and a segmentation-driven patch extraction, the proposed approach is capable of increasing the performance of a computer-aided diagnosis (CAD) system for the detection of prostate cancer (18.61% accuracy improvement) and breast cancer (17.72% accuracy improvement). Conclusion We strongly believe that the integration of the proposed pre-processing steps within deep learning frameworks will allow the achievement of robust and reliable CAD systems. Being based on nuclei detection, this strategy can be easily extended to other glandular tissues (e.g., colon, thyroid, pancreas, etc.) or staining methods (e.g., PAS)

Cross-cultural adaptation and validation of the Victorian Institute of Sports Assessment for Gluteal Tendinopathy questionnaire in Italian and investigation of the association between tendinopathy-related disability and pain

Background The Victorian Institute of Sports Assessment for gluteal tendinopathy (VISA-G) questionnaire has recently been proposed as a condition-specific patient reported outcome measurement tool to assess the tendinopathy-related disability. Aim The aim was to evaluate the reliability of the Italian version of the VISA-G questionnaire and its construct validity and to investigate the association between tendinopathy-related disability and pain. Design It consists in a cross-sectional study. Setting The location of the study was a university laboratory. Population We evaluated patients with gluteal tendinopathy (N.=38) and healthy controls (N.=38). Methods Subjects were asked to fill the VISA-G questionnaire twice to evaluate its reliability. The construct validity was evaluated by comparing the VISA score with the Oswestry Disability Index score. Moreover, pain intensity, extent and location were also investigated. Results The VISA-G scores showed non-significant changes in the median values and the values of intraclass correlation coefficient showed very high correlation between the first and second administration (ICC>0.90 in both populations). No significant correlations were found between VISA-G score and either pain extent (R=-0.05, P=0.76), or resting pain intensity (R=-0.13, P=0.45), or palpation pain intensity (R= 0.01, P=0.97). Conversely, a high (and significant) negative correlation was obtained between VISA-G score and Oswestry Disability Index score (R=-0.80, P<0.0001). Conclusions These results indicated that the VISA-G Italian version presents excellent test-retest reliability. Clinical rehabilitation impact The evaluation of gluteal tendinopathy-related disability through VISA-G can be useful for the prognostic assessment and/or follow-up of tendinopathy patients in combination with the pain drawing assessment of pain extent