1,578 research outputs found

    Spatio-temporal patterns driven by autocatalytic internal reaction noise

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    The influence that intrinsic local density fluctuations can have on solutions of mean-field reaction-diffusion models is investigated numerically by means of the spatial patterns arising from two species that react and diffuse in the presence of strong internal reaction noise. The dynamics of the Gray-Scott (GS) model with constant external source is first cast in terms of a continuum field theory representing the corresponding master equation. We then derive a Langevin description of the field theory and use these stochastic differential equations in our simulations. The nature of the multiplicative noise is specified exactly without recourse to assumptions and turns out to be of the same order as the reaction itself, and thus cannot be treated as a small perturbation. Many of the complex patterns obtained in the absence of noise for the GS model are completely obliterated by these strong internal fluctuations, but we find novel spatial patterns induced by this reaction noise in regions of parameter space that otherwise correspond to homogeneous solutions when fluctuations are not included.Comment: 12 pages, 18 figure

    Diffusion-induced bistability of driven nanomechanical resonators

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    We study nanomechanical resonators with frequency fluctuations due to diffusion of absorbed particles. The diffusion depends on the vibration amplitude through inertial effect. We find that, if the diffusion coefficient is sufficiently large, the resonator response to periodic driving displays bistability. The lifetime of the coexisting vibrational states scales exponentially with the diffusion coefficient. It also displays a characteristic scaling dependence on the distance to bifurcation points.Comment: 4 pages, 3 figure

    Loss of CpG island immunity to DNA methylation induced by mutation

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    Quantum State Diffusion and Time Correlation Functions

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    In computing the spectra of quantum mechanical systems one encounters the Fourier transforms of time correlation functions, as given by the quantum regression theorem for systems described by master equations. Quantum state diffusion (QSD) gives a useful method of solving these problems by unraveling the master equation into stochastic trajectories; but there is no generally accepted definition of a time correlation function for a single QSD trajectory. In this paper we show how QSD can be used to calculate these spectra directly; by formally solving the equations which arise, we arrive at a natural definition for a two-time correlation function in QSD, which depends explicitly on both the stochastic noise of the particular trajectory and the time of measurement, and which agrees in the mean with the ensemble average definition of correlation functions.Comment: 16 pages standard LaTeX + 1 figure (uuencoded postscript) Numerous minor revisions and clarifications. To appear in J. Mod. Optic

    Analysis of noise-induced transitions from regular to chaotic oscillations in the Chen system

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    The stochastically perturbed Chen system is studied within the parameter region which permits both regular and chaotic oscillations. As noise intensity increases and passes some threshold value, noise-induced hopping between close portions of the stochastic cycle can be observed. Through these transitions, the stochastic cycle is deformed to be a stochastic attractor that looks like chaotic. In this paper for investigation of these transitions, a constructive method based on the stochastic sensitivity function technique with confidence ellipses is suggested and discussed in detail. Analyzing a mutual arrangement of these ellipses, we estimate the threshold noise intensity corresponding to chaotization of the stochastic attractor. Capabilities of this geometric method for detailed analysis of the noise-induced hopping which generates chaos are demonstrated on the stochastic Chen system. © 2012 American Institute of Physics
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