From Out-Place Transformation Evolution to In-Place Model Patching

Model transformation is a key technique to automate software engineering tasks. Like any other software, transformations are not resilient to change. As changes to transformations can invalidate previously produced models, these changes need to be reflected on existing models. Currently, revised out-place transformations are re-executed entirely to achieve this co-evolution task. However, this induces an unnecessary overhead, particularly when computation- intensive transformations are marginally revised, and if existing models have undergone updates prior the re-execution, these updates get discarded in the newly produced models. To overcome this co-evolution challenge, our idea is to infer from evolved out-place transformations patch transformations that propagate changes to existing models by re-executing solely the affected parts based on an in-place execution strategy. Thereby, existing models are only updated by a patch instead of newly produced. In this paper, we present the conceptual foundation of our approach and report on its evaluation in a real-world case study.European Commission ICT Policy Support Programme 31785

Generic model transformations: Write once, reuse everywhere

The final publication is available at Springer via http://dx.doi.org/10.1007/978-3-642-21732-6_5Proceedings of 4th International Conference, ICMT 2011, Zurich, Switzerland, June 27-28, 2011Model transformation is one of the core techniques in Model Driven Engineering. Many transformation languages exist nowadays, but few offer mechanisms directed to the reuse of whole transformations or transformation fragments in different contexts. Taking inspiration from generic programming, in this paper we define model transformation templates. These templates are defined over meta-model concepts which later can be bound to specific meta-models. The binding mechanism is flexible as it permits mapping concepts and meta-models with certain kinds of structural heterogeneities. The approach is general and can be applied to any model transformation language. In this paper we report on its application to ATL.Work funded by the Spanish Ministry of Science (projects TIN2008-02081 and TIN2009-11555), and the R&D programme of the Madrid Region (project S2009 /TIC-1650

Qualitative evaluation of a form for standardized information exchange between orthopedic surgeons and occupational physicians

BACKGROUND: Both occupational physicians and orthopedic surgeons can be involved in the management of work relevant musculoskeletal disorders. These physicians hardly communicate with each other and this might lead to different advices to the patient. Therefore, we evaluated a standardized information exchange form for the exchange of relevant information between the orthopedic surgeon and the occupational physician. The main goals of this qualitative study are to evaluate whether the form improved information exchange, whether the form gave relevant information, and to generate ideas to further improve this information exchange. METHODS: The information exchange form was developed in two consensus meetings with five orthopedic surgeons and five occupational physicians. To evaluate the information exchange form, a qualitative evaluation was set up. Structured telephone interviews were undertaken with the patients, interviews with the physicians were face-to-face and semi-structured, based on a topic list. These interviews were recorded and literally transcribed. Each interview was analyzed separately in Atlas-Ti. RESULTS: The form was used for 8 patients, 7 patients agreed to participate in the qualitative evaluation. All three orthopedic surgeons involved and three of the six involved occupational physicians agreed to be interviewed. The form was transferred to 4 occupational physicians, the other 3 patients recovered before they visited the occupational physician. The information on the form was regarded to be useful. All orthopedic surgeons agreed that the occupational physician should take the initiative. Most physicians felt that the form should not be filled out for each patient visiting an orthopedic surgeon, but only for those patients who do not recover as expected. Orthopedic surgeons suggested that a copy of the medical information provided to the general practitioner could also be provided to occupational physicians. CONCLUSION: The information exchange form was regarded to be useful and could be used in practice. The occupational physician should take the initiative for using this form and most physicians felt the information should only be exchanged for patients who do not recover as expected. That means that the advantage of giving information early in the treatment is lost

A novel germline mutation of PTEN associated with brain tumours of multiple lineages

We have identified a novel germline mutation in the PTEN tumour suppressor gene. The mutation was identified in a patient with a glioma, and turned out to be a heterozygous germline mutation of PTEN (Arg234Gln), without loss of heterozygosity in tumour DNA. The biological consequences of this germline mutation were investigated by means of transfection studies of the mutant PTEN molecule compared to wild-type PTEN. In contrast to the wild-type molecule, the mutant PTEN protein is not capable of inducing apoptosis, induces increased cell proliferation and leads to high constitutive PKB/Akt activation, which cannot be increased anymore by stimulation with insulin. The reported patient, in addition to glioma, had suffered from benign meningioma in the past but did not show any clinical signs of Cowden disease or other hereditary diseases typically associated with PTEN germline mutations. The functional consequences of the mutation in transfection studies are consistent with high proliferative activity. Together, these findings suggest that the Arg234Gln missense mutation in PTEN has oncogenic properties and predisposes to brain tumours of multiple lineages

Prognostication using SpO(2)/FiO(2) in invasively ventilated ICU patients with ARDS due to COVID-19-Insights from the PRoVENT-COVID study

Background: The SpO(2)/FiO(2) is a useful oxygenation parameter with prognostic capacity in patients with ARDS. We investigated the prognostic capacity of SpO(2)/FiO(2) for mortality in patients with ARDS due to COVID-19. Methods: This was a post-hoc analysis of a national multicenter cohort study in invasively ventilated patients with ARDS due to COVID-19. The primary endpoint was 28-day mortality. Results: In 869 invasively ventilated patients, 28-day mortality was 30.1%. The SpO(2)/FiO(2) on day 1 had no prognostic value. The SpO(2)/FiO(2) on day 2 and day 3 had prognostic capacity for death, with the best cut-offs being 179 and 199, respectively. Both SpO(2)/FiO(2) on day 2 (OR, 0.66 [95%-CI 0.46-0.96]) and on day 3 (OR, 0.70 [95%-CI 0.51-0.96]) were associated with 28-day mortality in a model corrected for age, pH, lactate levels and kidney dysfunction (AUROC 0.78 [0.76-0.79]). The measured PaO2/FiO(2) and the PaO2/FiO(2) calculated from SpO(2)/FiO(2) were strongly correlated (Spearman's r = 0.79). Conclusions: In this cohort of patients with ARDS due to COVID-19, the SpO(2)/FiO(2) on day 2 and day 3 are independently associated with and have prognostic capacity for 28-day mortality. The SpO(2)/FiO(2) is a useful metric for risk stratification in invasively ventilated COVID-19 patients. (C) 2021 The Authors. Published by Elsevier Inc

Desenvolvimento do sistema tegumentar em bovinos com idades gestacionais estimadas de 20 a 140 dias

A pele representa parte importante do sistema tegumentar, pois desempenha funções como a proteção contra desidratação, lesões e infecções, além de apresentar alto poder de renovação. Histologicamente, a pele consiste de duas camadas funcionais, morfologicamente distintas, a epiderme e a derme. As glândulas mamárias, capsula ungueal e cornos também fazem parte deste sistema. Devido à escassez de dados na literatura sobre o desenvolvimento da pele e dos anexos de natureza córnea em bovinos, o objetivo deste trabalho foi descrever as características morfológicas do desenvolvimento do sistema tegumentar durante os períodos embrionário e fetal em bovinos. Os indivíduos foram divididos em três grupos: Grupo I -embriões de 20-26 dias (n=4); Grupo II -embriões 30-47 dias (n=6) e Grupo III -fetos de 74-140 dias (n=6). Durante o desenvolvimento da pele observou-se diferentes padrões morfológicos de acordo com as regiões analisadas, apresentando índice maior de diferenciação no intervalo entre 30-47 dias de gestação. O aparelho ungueal e a glândula mamária se desenvolvem mais tardiamente entre os dias 74-140 da gestação. Em resumo, estes resultados acerca do desenvolvimento do sistema tegumentar em bovinos, poderão auxiliar na interpretação e compreensão da formação dos órgãos que o constituem, assim como para a compreensão de alterações patológicas associadas à organogênese

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data