Plant Metabolomics Applications in the Brassicaceae: Added Value for Science and Industry

Crops from the family Brassicaceae represent a diverse and very interesting group of plants. In addition, their close relationship with the model plant, Arabidopsis thaliana, makes combined research on these species both scientifically valuable and of considerable commercial importance. In the post-genomics era, much effort is being placed on expanding our capacity to use advanced technologies such as proteomics and metabolomics, to broaden our knowledge of the molecular organization of plants and how genetic differences are translated into phenotypic ones. Metabolomics in particular is gaining much attention mainly due both to the comprehensiveness of the technology and also the potentially close relationship between biochemical composition (including human health-related phytochemicals) and phenotype. In this short review, a brief introduction to the main metabolomics technologies is given taking examples from research on the Brassicaceae for illustratio

Towards happy and healthy travellers: A research agenda

Well-being and health are two important elements contributing to people's quality of life. Although well-being and health have been analysed for many decades, an increased attention since the beginning of this century can be noticed, partly due to new ways of measuring people's subjective well-being and the rapid growth of obesity and obesity-related diseases. Over the past ten years studies have started analysing the link between travel and well-being, mainly focussing on aspects explaining people's satisfaction with travel. However, the role of travel satisfaction has not yet been fully explored, as it can also impact people's travel attitudes, travel behaviour and residential location choice. Previous studies on travel and health have mainly focussed on traffic safety, air pollution and recently also on physical activity. These studies have indicated that physical activity − and as a result overall health levels − are affected by people's residential neighbourhood and travel behaviour (e.g., mode choice). However, a clear picture on how physical activity, the built environment, attitudes and travel behaviour are linked to each other is missing. Furthermore, it is also possible that physical activity obtained by travel (e.g., by walking or cycling) can affect people's well-being and satisfaction with travel. In this paper, a research agenda aiming at a better understanding of the links between well-being, health and travel behaviour is presented. Three objectives can be distinguished: (i) the role of travel satisfaction in explaining travel behaviour, travel attitudes and residential location (choice), (ii) creating new insights into the link between travel and health, and (iii) linking well-being and health in a travel-behaviour context

The phenomenology of electric dipole moments in models of scalar leptoquarks

We study the phenomenology of electric dipole moments (EDMs) induced in various scalar leptoquark models. We consider generic leptoquark couplings to quarks and leptons and match to Standard Model effective field theory. After evolving the resulting operators to low energies, we connect to EDM experiments by using up-to-date hadronic, nuclear, and atomic matrix elements. We show that current experimental limits set strong constraints on the possible CP-violating phases in leptoquark models. Depending on the quarks and leptons involved in the interaction, the existing searches for EDMs of leptons, nucleons, atoms, and molecules all play a role in constraining the CP-violating couplings. We discuss the impact of hadronic and nuclear uncertainties as well as the sensitivities that can be achieved with future EDM experiments. Finally, we study the impact of EDM constraints on a specific leptoquark model that can explain the recent $B$-physics anomalies.Comment: Published versio

Intra- and inter-metabolite correlation spectroscopy of tomato metabolomics data obtained by liquid chromatography-mass spectrometry and nuclear magnetic resonance

Nuclear magnetic resonance (NMR) and liquid chromatography-mass spectrometry (LCMS) are frequently used as technological platforms for metabolomics applications. In this study, the metabolic profiles of ripe fruits from 50 different tomato cultivars, including beef, cherry and round types, were recorded by both 1H NMR and accurate mass LC-quadrupole time-of-flight (QTOF) MS. Different analytical selectivities were found for these both profiling techniques. In fact, NMR and LCMS provided complementary data, as the metabolites detected belong to essentially different metabolic pathways. Yet, upon unsupervised multivariate analysis, both NMR and LCMS datasets revealed a clear segregation of, on the one hand, the cherry tomatoes and, on the other hand, the beef and round tomatoes. Intra-method (NMR¿NMR, LCMS¿LCMS) and inter-method (NMR¿LCMS) correlation analyses were performed enabling the annotation of metabolites from highly correlating metabolite signals. Signals belonging to the same metabolite or to chemically related metabolites are among the highest correlations found. Inter-method correlation analysis produced highly informative and complementary information for the identification of metabolites, even in de case of low abundant NMR signals. The applied approach appears to be a promising strategy in extending the analytical capacities of these metabolomics techniques with regard to the discovery and identification of biomarkers and yet unknown metabolites

Environmental monitoring in heterogeneous soil-landscapes; A Dutch case study

The spatial heterogeneity of agricultural soil-landscapes is mostly not taken into account in environmental policies. Most environmental goals have been defined at national level or farm level but not at the landscape level. The potential for setting up a regional environmental monitoring network that supports self governance was explored. The research was performed in the Northern Friesian Woodland

Characterization of CMR5c and CMR12a, novel fluorescent Pseudomonas strains from the cocoyam rhizosphere with biocontrol activity

Aim: To screen for novel antagonistic Pseudomonas strains producing both phenazines and biosurfactants that are as effective as Pseudomonas aeruginosa PNA1 in the biocontrol of cocoyam root rot caused by Pythium myriotylum. Material and Results: Forty pseudomonads were isolated from the rhizosphere of healthy white and red cocoyam plants appearing in natural, heavily infested fields in Cameroon. In vitro tests demonstrated that Py. myriotylum antagonists could be retrieved from the red cocoyam rhizosphere. Except for one isolate, all antagonistic isolates produced phenazines. Results from whole-cell protein profiling showed that the antagonistic isolates are different from other isolated pseudomonads, while BOX-PCR revealed high genomic similarity among them. 16S rDNA sequencing of two representative strains within this group of antagonists confirmed their relatively low similarity with validly described Pseudomonas species. These antagonists are thus provisionally labelled as unidentified Pseudomonas strains. Among the antagonists, Pseudomonas CMR5c and CMR12a were selected because of their combined production of phenazines and biosurfactants. For strain CMR5c also, production of pyrrolnitrin and pyoluteorin was demonstrated. Both CMR5c and CMR12a showed excellent in vivo biocontrol activity against Py. myriotylum to a similar level as Ps. aeruginosa PNA1. Conclusion: Pseudomonas CMR5c and CMR12a were identified as novel and promising biocontrol agents of Py. myriotylum on cocoyam, producing an arsenal of antagonistic metabolites. Significance and Impact of the Study: Present study reports the identification of two newly isolated fluorescent Pseudomonas strains that can replace the opportunistic human pathogen Ps. aeruginosa PNA1 in the biocontrol of cocoyam root rot and could be taken into account for the suppression of many plant pathogens

Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression

Gene duplication and horizontal gene transfer play an important role in the evolution of prokaryotic genomes. We have investigated the role of three CprK paralogues from the cAMP receptor protein-fumarate and nitrate reduction regulator (CRP-FNR) family of transcriptional regulators that are encoded in the genome of Desulfitobacterium hafniense DCB-2 and possibly regulate expression of genes involved in the energy-conserving terminal reduction of organohalides (halorespiration). The results from in vivo and in vitro promoter probe assays show that two regulators (CprK1 and CprK2) have an at least partially overlapping effector specificity, with preference for ortho-chlorophenols, while meta-chlorophenols proved to be effectors for CprK4. The presence of a potential transposase-encoding gene in the vicinity of the cprK genes indicates that their redundancy is probably caused by mobile genetic elements. The CprK paralogues activated transcription from promoters containing a 14 bp inverted repeat (dehalobox) that closely resembles the FNR-box. We found a strong negative correlation between the rate of transcriptional activation and the number of nuclecitide changes from the optimal dehalobox sequence (TTAAT-N-4-ATTAA). Transcription was initiated by CprK4 from a promoter that is situated upstream of a gene encoding a methyl-accepting chemotaxis protein. This might be the first indication of taxis of an anaerobic bacterium to halogenated aromatic compounds

A REVISION OF THE AFRICAN GENERA PAROPSIOPSIS AND SMEATHMANNIA (PASSIFLORACEAE - PAROPSIEAE), INCLUDING A NEW SPECIES OF PAROPSIOPSIS FROM CAMEROON

The African genera Paropsiopsis Engl. and Smeathmannia R.Br. (Passifloraceae - Paropsieae) are revised. The two genera are well separated based on the presence or absence of a second, annuliform, corona, as well as the number of stamens and curvature of their filaments. An overview of important characters and a key to all genera of Paropsieae is provided. In Paropsiopsis all previously recognised species are united under P. decandra (Baill.) Sleumer. In addition one species, Paropsiopsis atrichogyna J.M.de Vos & Breteler, is newly described and illustrated. In Smeathmannia both previously recognised species are maintained, but infraspecific taxa are rejected. Descriptions of both genera and their species, keys to species, illustrations and distribution maps are provide