2,108 research outputs found

    Optimization of carbon and energy utilization through differential translational efficiency.

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    Control of translation is vital to all species. Here we employ a multi-omics approach to decipher condition-dependent translational regulation in the model acetogen Clostridium ljungdahlii. Integration of data from cells grown autotrophically or heterotrophically revealed that pathways critical to carbon and energy metabolism are under strong translational regulation. Major pathways involved in carbon and energy metabolism are not only differentially transcribed and translated, but their translational efficiencies are differentially elevated in response to resource availability under different growth conditions. We show that translational efficiency is not static and that it changes dynamically in response to mRNA expression levels. mRNAs harboring optimized 5'-untranslated region and coding region features, have higher translational efficiencies and are significantly enriched in genes encoding carbon and energy metabolism. In contrast, mRNAs enriched in housekeeping functions harbor sub-optimal features and have lower translational efficiencies. We propose that regulation of translational efficiency is crucial for effectively controlling resource allocation in energy-deprived microorganisms

    On The Gould’s Formula for Stirling Numbers of The Second Kind

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    We present an alternative deduction of the Gould’s relation for Stirling numbers of the second kind. Our approach is based in the Nörlund polynomials and in the duality property between the Stirling numbers

    Avaliação de diferentes resíduos agroindustriais como substratos para a produção de celulases por fermentação semi-sólida.

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    bitstream/CNPDIA-2009-09/11902/1/BPD22_2008.pd

    A computer aided approach for river styles-inspired characterization of large basins: The Magdalena river (Colombia)

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    This paper addresses the geomorphic characterization and classification of large rivers in a framework of scarce information. This is inspired by the River Styles Framework with some modifications that make the process more straightforward and accessible to practitioners and more applicable to large basins, while reducing the subjective, expert-based inputs, as the process is now more systematic. To this aim, it utilizes innovative criteria and some computer-aided procedures and tools based on GIS, Excel and Python. This approach sheds light on the character and the behavior of rivers, which is key to informing planning, management and restoration. The application to the Magdalena River (Colombia) illustrates the characterization and classification process and the type of results, which ultimately highlight the great geomorphic diversity of that river. The process is applicable to many other rivers worldwide

    Rheology of distorted nematic liquid crystals

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    We use lattice Boltzmann simulations of the Beris--Edwards formulation of nematodynamics to probe the response of a nematic liquid crystal with conflicting anchoring at the boundaries under shear and Poiseuille flow. The geometry we focus on is that of the hybrid aligned nematic (HAN) cell, common in devices. In the nematic phase, backflow effects resulting from the elastic distortion in the director field render the velocity profile strongly non-Newtonian and asymmetric. As the transition to the isotropic phase is approached, these effects become progressively weaker. If the fluid is heated just above the transition point, however, another asymmetry appears, in the dynamics of shear band formation.Comment: 7 pages, 4 figures. Accepted for publication in Europhys. Let

    Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-κB pathways.

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    The NF-κB protein RelB controls dendritic cell (DC) maturation and may be targeted therapeutically to manipulate T cell responses in disease. Here we report that RelB promoted DC activation not as the expected RelB-p52 effector of the noncanonical NF-κB pathway, but as a RelB-p50 dimer regulated by canonical IκBs, IκBα and IκBɛ. IκB control of RelB minimized spontaneous maturation but enabled rapid pathogen-responsive maturation. Computational modeling of the NF-κB signaling module identified control points of this unexpected cell type-specific regulation. Fibroblasts that we engineered accordingly showed DC-like RelB control. Canonical pathway control of RelB regulated pathogen-responsive gene expression programs. This work illustrates the potential utility of systems analyses in guiding the development of combination therapeutics for modulating DC-dependent T cell responses

    LO-phonon assisted polariton lasing in a ZnO based microcavity

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    Polariton relaxation mechanisms are analysed experimentally and theoretically in a ZnO-based polariton laser. A minimum lasing threshold is obtained when the energy difference between the exciton reservoir and the bottom of the lower polariton branch is resonant with the LO phonon energy. Tuning off this resonance increases the threshold, and exciton-exciton scattering processes become involved in the polariton relaxation. These observations are qualitatively reproduced by simulations based on the numerical solution of the semi-classical Boltzmann equations
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