Heterologous expression of the Haynaldia villosa pattern-recognition receptor CERK1-V in wheat increases resistance to three fungal diseases

Wheat production is under continuous threat by various fungal pathogens. Identification of multiple-disease resistance genes may lead to effective disease control via the development of cultivars with broad-spectrum resistance. Plant Lysin-motif (LysM)-type pattern-recognition receptors, which elicit innate immunity by recognizing fungal pathogen associated molecular patterns such as chitin, are potential candidates for such resistance. In this study, we cloned a LysM receptor-like kinase gene, CERK1-V, from the diploid wheat relative Haynaldia villosa. CERK1-V expression was induced by chitin and Blumeria graminis f. sp. tritici, the causal agent of wheat powdery mildew. Heterologous overexpression of CERK1-V in wheat inhibited the development of three fungal pathogens, thereby increased resistance to powdery mildew, yellow rust, and Fusarium head blight. CERK1-V physically interacted with the wheat LysM protein TaCEBiPs. CERK1-V/TaCEBiPs interaction promoted chitin recognition and activated chitin signal transduction in wheat. Transgenic plants with excessively high CERK1-V expression showed high resistance but abnormal plant growth, whereas plants with moderate expression level showed adequate resistance level with no marked impairment of plant growth. In transgenic lines, RNA-seq showed that gene expression involved in plant innate immunity was activated. Expression of genes involved in photosynthesis, ER stress and multiple phytohormone pathways was also activated. Optimized expression of CERK1-V in wheat can confer disease resistance without compromising growth or defense fitness

WaveFormer: transformer-based denoising method for gravitational-wave data

With the advent of gravitational-wave astronomy and the discovery of more compact binary coalescences, data quality improvement techniques are desired to handle the complex and overwhelming noise in gravitational wave (GW) observational data. Though recent machine learning-based studies have shown promising results for data denoising, they are unable to precisely recover both the GW signal amplitude and phase. To address such an issue, we develop a deep neural network centered workflow, WaveFormer, for significant noise suppression and signal recovery on observational data from the Laser Interferometer Gravitational-Wave Observatory (LIGO). The WaveFormer has a science-driven architecture design with hierarchical feature extraction across a broad frequency spectrum. As a result, the overall noise and glitch are decreased by more than one order of magnitude and the signal recovery error is roughly 1% and 7% for the phase and amplitude, respectively. Moreover, on 75 reported binary black hole events of LIGO we obtain a significant improvement of inverse false alarm rate. Our work highlights the potential of large neural networks in GW data analysis and, while primarily demonstrated on LIGO data, its adaptable design indicates promise for broader application within the International Gravitational-Wave Observatories Network in future observational runs

Characterization of sucrose nonfermenting-1-related protein kinase 2 (SnRK2) gene family in Haynaldia villosa demonstrated SnRK2.9-V enhances drought and salt stress tolerance of common wheat

Abstract Background The sucrose nonfermenting-1-related protein kinase 2 (SnRK2) plays a crucial role in responses to diverse biotic/abiotic stresses. Currently, there are reports on these genes in Haynaldia villosa, a diploid wild relative of wheat. Results To understand the evolution of SnRK2-V family genes and their roles in various stress conditions, we performed genome-wide identification of the SnRK2-V gene family in H. villosa. Ten SnRK2-V genes were identified and characterized for their structures, functions and spatial expressions. Analysis of gene exon/intron structure further revealed the presence of evolutionary paths and replication events of SnRK2-V gene family in the H. villosa. In addition, the features of gene structure, the chromosomal location, subcellular localization of the gene family were investigated and the phylogenetic relationship were determined using computational approaches. Analysis of cis-regulatory elements of SnRK2-V gene members revealed their close correlation with different phytohormone signals. The expression profiling revealed that ten SnRK2-V genes expressed at least one tissue (leave, stem, root, or grain), or in response to at least one of the biotic (stripe rust or powdery mildew) or abiotic (drought or salt) stresses. Moreover, SnRK2.9-V was up-regulated in H. villosa under the drought and salt stress and overexpressing of SnRK2.9-V in wheat enhanced drought and salt tolerances via enhancing the genes expression of antioxidant enzymes, revealing a potential value of SnRK2.9-V in wheat improvement for salt tolerance. Conclusion Our present study provides a basic genome-wide overview of SnRK2-V genes in H. villosa and demonstrates the potential use of SnRK2.9-V in enhancing the drought and salt tolerances in common wheat

Pleiotropic Effect of the compactum Gene and Its Combined Effects with Other Loci for Spike and Grain-Related Traits in Wheat

Club wheat (Triticum aestivum ssp. compactum) with a distinctly compact spike morphology was conditioned by the dominant compactum (C) locus on chromosome 2D and resulted in a redistribution of spike yield components. The disclosure of the genetic basis of club wheat was a prerequisite for the development of widely adapted, agronomically competitive club wheat cultivars. In this study, we used a recombinant inbred line population derived from a cross between club wheat Hiller and modern cultivar Yangmai 158 to construct a genetic linkage map and identify quantitative trait loci associated with 15 morphological traits. The club allele acted in a semi-dominant manner and the C gene was mapped to 370.12–406.29 Mb physical region on the long arm of 2D. Apart from compact spikes, C exhibited a pleiotropic effect on ten other agronomic traits, including plant height, three spike-related traits and six grain-related traits. The compact spike phenotype was correlated with decreased grain size and weight, but with an increase in floret fertility and grain number. These pleiotropic effects make club wheat have compatible spike weight with a normal spike from common wheat. The genetic effects of various gene combinations of C with four yield-related genes, including Ppd-D1, Vrn-D3, Rht-B1b and Rht8, were evaluated. C had no epistatic interaction with any of these genes, indicating that their combinations would have an additive effect on other agronomically important traits. Our research provided a theoretical foundation for the potentially effective deployment of C gene into modern breeding varieties in combination with other favorable alleles

The Regulatory Network of CMPG1-V in Wheat–Blumeria graminis f. sp. tritici Interaction Revealed by Temporal Profiling Using RNA-Seq

Wheat powdery mildew (Pm), caused by Blumeria graminis f. sp. tritici (Bgt), is a prevalent fungal disease. The diploid wheat relative Haynaldia villosa (H. villosa) showed broad-spectrum resistance (BSR) to Pm. A previous study reported an E3 ligase gene, CMPG1-V from H. villosa, showing BSR to Pm. To elucidate the regulatory network mediated by CMPG1-V, in this study, gene expression profiling of CMPG1-V transgenic plant (CMPG1-VOE) and its receptor Yangmai 158 was analyzed and compared after Bgt inoculation at four infection stages. GO and KEGG analysis revealed obvious reprogramming of SA and ABA signaling, starch/sucrose metabolism, and photosynthesis in CMPG1-VOE, compared with those in Yangmai 158. Transcripts of SA synthesis genes SARD1 and UGT, signaling factors TGA and PRs, and SnRKs in ABA signaling were specifically upregulated in CMPG1-VOE rather than Yangmai 158. Transcripts of LHCII in photosynthesis, GLUC and TPP in starch/sucrose metabolism were also induced distinctly in CMPG1-VOE. WGCNA analysis showed crucial regulatory candidates of CMPG1-V, involving serine/threonine-protein kinase in phosphorylation, glucosyltransferase in flavonoid biosynthesis, defense factor WRKYs, and peroxidase in oxidative stress. Our results facilitate the deciphering of the resistant regulatory network of CMPG1-V and the identification of key candidates which might be employed in breeding programs

Ruthenium Dye N749 Covalently Functionalized Reduced Graphene Oxide: A Novel Photocatalyst for Visible Light H₂ Evolution

To improve the photocatalytic activity of graphene-based catalysts, an efficient photocatalytic hydrogen evolution system based on black dye N749 covalently functionalized reduced graphene oxide (rGO-N749) was synthesized. The obtained product was characterized with transmission electron microscopy (TEM), atomic force microscopy (AFM), Fourier transform infrared spectroscopy (FTIR), Raman spectra, X-ray photoelectron spectroscopy (XPS), and fluorescence and UV–vis spectroscopy. The results demonstrate that N749 has been successfully grafted on the surface of rGO. The rGO-N749 nanocomposite exhibits high light-harvesting efficiency and covered a range of wavelengths from the ultraviolet to visible light. The efficient fluorescence quenching and the enhanced photocurrent response confirm that the photoinduced electron transfers from the N749 moiety to the rGO sheet. Moreover, we chose Pt nanoparticles (NPs) as cocatalyst loading on rGO-N749 sheets to obtain the optimal H₂ production effect. The platinized rGO-N749 (rGO-N749-Pt) demonstrates a quite high photocatalytic activity for hydrogen evolution from water under both UV–vis and visible light (λ > 400 nm) irradiation. The apparent quantum yields are 0.54 and 0.21% at 365 and 420 nm, respectively. These results reveal that the rGO-N749-Pt nanocomposite consolidated the advantages of N749, rGO, and Pt NPs and can be a potential candidate for hydrogen evolution from water under UV–vis or visible-light irradiation

Silicon Phthalocyanine Covalently Functionalized N‑Doped Ultrasmall Reduced Graphene Oxide Decorated with Pt Nanoparticles for Hydrogen Evolution from Water

To improve the photocatalytic activity of graphene-based catalysts, silicon phthalocyanine (SiPc) covalently functionalized N-doped ultrasmall reduced graphene oxide (N-usRGO) has been synthesized through 1,3-dipolar cycloaddition of azomethine ylides. The obtained product (N-usRGO/SiPc) was characterized by transmission electron microscopy, atomic force microscopy, Fourier transform infrared spectroscopy, Raman spectra, X-ray photoelectron spectroscopy, fluorescence, and UV–vis spectroscopy. The results demonstrate that SiPc has been successfully grafted on the surface of N-usRGO. The N-usRGO/SiPc nanocomposite exhibits high light-harvesting efficiency covering a range of wavelengths from the ultraviolet to visible light. The efficient fluorescence quenching and the enhanced photocurrent response confirm that the photoinduced electron transfers from the SiPc moiety to the N-usRGO sheet. Moreover, we chose Pt nanoparticles as cocatalyst to load on N-usRGO/SiPc sheets to obtain the optimal H₂ production effect. The platinized N-usRGO/SiPc (N-usRGO/SiPc/Pt) demonstrates good hydrogen evolution performance under both UV–vis and visible light (λ>400 nm) irradiation. The apparent quantum yields are 1.3% and 0.56% at 365 and 420 nm, respectively. These results reveal that N-usRGO/SiPc/Pt nanocomposite, consolidating the advantages of SiPc, N-usRGO, and Pt NPs, can be a potential candidate for hydrogen evolution from water under UV–vis or visible light irradiation