3,168 research outputs found

    Elastic wave propagation for plane strain problems by the theory of characteristics

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    Elastic wave propagation in two dimensions using theory of characteristic

    Generalized characteristics method for elastic wave propagation problems

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    Characteristic equations are derived in generalized curvilinear coordinates. Linear elastic, isotropic, and homogeneous constitutive equations have been used in the derivation. The generalized characteristic equations readily lend themselves to any requirements of space dimension and geometry. A simple boundary value problem is solved to indicate the applicability of these equations

    RLZAP: Relative Lempel-Ziv with Adaptive Pointers

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    Relative Lempel-Ziv (RLZ) is a popular algorithm for compressing databases of genomes from individuals of the same species when fast random access is desired. With Kuruppu et al.'s (SPIRE 2010) original implementation, a reference genome is selected and then the other genomes are greedily parsed into phrases exactly matching substrings of the reference. Deorowicz and Grabowski (Bioinformatics, 2011) pointed out that letting each phrase end with a mismatch character usually gives better compression because many of the differences between individuals' genomes are single-nucleotide substitutions. Ferrada et al. (SPIRE 2014) then pointed out that also using relative pointers and run-length compressing them usually gives even better compression. In this paper we generalize Ferrada et al.'s idea to handle well also short insertions, deletions and multi-character substitutions. We show experimentally that our generalization achieves better compression than Ferrada et al.'s implementation with comparable random-access times

    Improved Approximate String Matching and Regular Expression Matching on Ziv-Lempel Compressed Texts

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    We study the approximate string matching and regular expression matching problem for the case when the text to be searched is compressed with the Ziv-Lempel adaptive dictionary compression schemes. We present a time-space trade-off that leads to algorithms improving the previously known complexities for both problems. In particular, we significantly improve the space bounds, which in practical applications are likely to be a bottleneck

    A response to “Trends in tropical tree growth: re-analysis confirms earlier findings”

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    We recently demonstrated that growth trends from tree rings from Van der Sleen et al. (2015) and Groenendijk et al. (2015) are affected by demographic biases. In particular, clustered age distributions led to a negative bias in their growth trends. In a response, they challenge our analysis and present an alternative correction approach. We here show that their arguments are incorrect and based on misunderstanding of our analysis, and that their alternative approach does not work

    Scenarios in the development of Mediterranean cyclones

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    The Mediterranean is one of the most cyclogenetic regions in the world. The cyclones are concentrated along its northern coasts and their tracks are oriented more or less west-east, with several secondary tracks connecting them to Europe and to North Africa. The aim of this study is to examine scenarios in the development of Mediterranean cyclones, based on five selected winter seasons (October–March). We detected the cyclones subjectively using 6-hourly Sea-Level Pressure maps, based on the NCAR/NCEP reanalysis archive. <br><br> HMSO (1962) has shown that most Mediterranean cyclones (58%) enter the Mediterranean from the Atlantic Ocean (through Biscay and Gibraltar), and from the south-west, the Sahara Desert, while the rest are formed in the Mediterranean Basin itself. Our study revealed that only 13% of the cyclones entered the Mediterranean, while 87% were generated in the Mediterranean Basin. The entering cyclones originate in three different regions: the Sahara Desert (6%), the Atlantic Ocean (4%), and Western Europe (3%). <br><br> The cyclones formed within the Mediterranean Basin were found to generate under the influence of external cyclonic systems, i.e. as "daughter cyclones" to "parent cyclones" or troughs. These parent systems are located in three regions: Europe (61%), North Africa and the Red Sea (34.5%) and the Mediterranean Basin itself (4.5%). The study presents scenarios in the development of Mediterranean cyclones during the winter season, emphasizing the cyclogenesis under the influence of various external forcing. <br><br> The large difference with respect to the findings of HMSO (1962) is partly explained by the dominance of spring cyclones generating in the Sahara Desert, especially in April and May that were not included in our study period

    Efficient LZ78 factorization of grammar compressed text

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    We present an efficient algorithm for computing the LZ78 factorization of a text, where the text is represented as a straight line program (SLP), which is a context free grammar in the Chomsky normal form that generates a single string. Given an SLP of size nn representing a text SS of length NN, our algorithm computes the LZ78 factorization of TT in O(nN+mlogN)O(n\sqrt{N}+m\log N) time and O(nN+m)O(n\sqrt{N}+m) space, where mm is the number of resulting LZ78 factors. We also show how to improve the algorithm so that the nNn\sqrt{N} term in the time and space complexities becomes either nLnL, where LL is the length of the longest LZ78 factor, or (Nα)(N - \alpha) where α0\alpha \geq 0 is a quantity which depends on the amount of redundancy that the SLP captures with respect to substrings of SS of a certain length. Since m=O(N/logσN)m = O(N/\log_\sigma N) where σ\sigma is the alphabet size, the latter is asymptotically at least as fast as a linear time algorithm which runs on the uncompressed string when σ\sigma is constant, and can be more efficient when the text is compressible, i.e. when mm and nn are small.Comment: SPIRE 201

    Faster subsequence recognition in compressed strings

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    Computation on compressed strings is one of the key approaches to processing massive data sets. We consider local subsequence recognition problems on strings compressed by straight-line programs (SLP), which is closely related to Lempel--Ziv compression. For an SLP-compressed text of length mˉ\bar m, and an uncompressed pattern of length nn, C{\'e}gielski et al. gave an algorithm for local subsequence recognition running in time O(mˉn2logn)O(\bar mn^2 \log n). We improve the running time to O(mˉn1.5)O(\bar mn^{1.5}). Our algorithm can also be used to compute the longest common subsequence between a compressed text and an uncompressed pattern in time O(mˉn1.5)O(\bar mn^{1.5}); the same problem with a compressed pattern is known to be NP-hard
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