Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

L). Some have advocated the use of the nuclear-encoded, internal transcribed spacer two (ITS2) as an alternative to the traditional chloroplast markers. However, the ITS2 is broadly perceived to be insufficiently conserved or to be confounded by introgression or biparental inheritance patterns, precluding its broad use in phylogenetic reconstruction or as a DNA barcode. A growing body of evidence has shown that simultaneous analysis of nucleotide data with secondary structure information can overcome at least some of the limitations of ITS2. The goal of this investigation was to assess the feasibility of an automated, sequence-structure approach for analysis of IT2 data from a large sampling of phylum Chlorophyta.Sequences and secondary structures from 591 chlorophycean, 741 trebouxiophycean and 938 ulvophycean algae, all obtained from the ITS2 Database, were aligned using a sequence structure-specific scoring matrix. Phylogenetic relationships were reconstructed by Profile Neighbor-Joining coupled with a sequence structure-specific, general time reversible substitution model. Results from analyses of the ITS2 data were robust at multiple nodes and showed considerable congruence with results from published phylogenetic analyses.Our observations on the power of automated, sequence-structure analyses of ITS2 to reconstruct phylum-level phylogenies of the green algae validate this approach to assessing diversity for large sets of chlorophytan taxa. Moreover, our results indicate that objections to the use of ITS2 for DNA barcoding should be weighed against the utility of an automated, data analysis approach with demonstrated power to reconstruct evolutionary patterns for highly divergent lineages

The Battle of the Water Networks II (BWN-II)

The Battle of the Water Networks II (BWN-II) is the latest of a series of competitions related to the design and operation of water distribution systems (WDSs) undertaken within the Water Distribution Systems Analysis (WDSA) Symposium series. The BWN-II problem specification involved a broadly defined design and operation problem for an existing network that has to be upgraded for increased future demands, and the addition of a new development area. The design decisions involved addition of new and parallel pipes, storage, operational controls for pumps and valves, and sizing of backup power supply. Design criteria involved hydraulic, water quality, reliability, and environmental performance measures. Fourteen teams participated in the Battle and presented their results at the 14th Water Distribution Systems Analysis (WDSA 2012) conference in Adelaide, Australia, September 2012. This paper summarizes the approaches used by the participants and the results they obtained. Given the complexity of the BWN-II problem and the innovative methods required to deal with the multi-objective, high dimensional and computationally demanding nature of the problem, this paper represents a snap-shot of state of the art methods for the design and operation of water distribution systems. A general finding of this paper is that there is benefit in using a combination of heuristic engineering experience and sophisticated optimization algorithms when tackling complex real-world water distribution system design problems.Angela Marchi...Angus R. Simpson, Aaron C. Zecchin, Holger R. Maier...Christopher Stokes, Wenyan Wu, Graeme C. Dandy...et al

The Battle of the Water Networks II (BWN-II)

The Battle of the Water Networks II (BWN-II) is the latest of a series of competitions related to the design and operation of water distribution systems (WDSs) undertaken within the Water Distribution Systems Analysis (WDSA) Symposium series. The BWN-II problem specification involved a broadly defined design and operation problem for an existing network that has to be upgraded for increased future demands, and the addition of a new development area. The design decisions involved addition of new and parallel pipes, storage, operational controls for pumps and valves, and sizing of backup power supply. Design criteria involved hydraulic, water quality, reliability, and environmental performance measures. Fourteen teams participated in the Battle and presented their results at the 14th Water Distribution Systems Analysis (WDSA 2012) conference in Adelaide, Australia, September 2012. This paper summarizes the approaches used by the participants and the results they obtained. Given the complexity of the BWN-II problem and the innovative methods required to deal with the multi-objective, high dimensional and computationally demanding nature of the problem, this paper represents a snap-shot of state of the art methods for the design and operation of water distribution systems. A general finding of this paper is that there is benefit in using a combination of heuristic engineering experience and sophisticated optimization algorithms when tackling complex real-world water distribution system design problems.Angela Marchi...Angus R. Simpson, Aaron C. Zecchin, Holger R. Maier...Christopher Stokes, Wenyan Wu, Graeme C. Dandy...et al