Predicting the past, present and future distributions of an endangered marsupial in a semi‐arid environment

This is the final version. Available on open access from Wiley via the DOI in this recordGlobally, the impacts of anthropogenic climate change can displace species into more favourable climates. Semi‐arid desert specialists, such as the sandhill dunnart, Sminthopsis psammophila, are typically susceptible to rainfall deficits, wildfires and extreme temperatures caused by anthropogenic climate change. We first used maximum entropy (MaxEnt) species distribution models (SDMs) to predict the current distribution of S. psammophila. Between 2016 and 2018, we ground validated the model’s predictions throughout Western Australia, confirming S. psammophila in 18 locations in which it was predicted to occur. The predicted distribution of S. psammophila appears mostly constrained to within its known range. However, S. psammophila was verified 150 km north of its range in Western Australia and connectivity between the South Australian populations was correctly predicted. In 2019, we used updated occurrence data to project SDMs for S. psammophila during the mid‐Holocene, present day and under two future representative concentration pathways (RCPs) of RCP 4.5 (an optimistic emissions scenario) and RCP 8.5 (“business as usual”) for 2050 and 2070. By 2050 (RCP 8.5), almost all Western Australian Great Victoria Desert (WAGVD) habitat is predicted to be unsuitable for S. psammophila. By 2070 (RCP 8.5), the climates of the WAGVD and Yellabinna Regional Reserve populations are predicted to become unsuitable, and the species’ geographical range is predicted to contract in Australia by 80%. However, the 2070 (RCP 4.5) scenario predicts that this contraction could be halved. As a sandy desert specialist, the distribution of S. psammophila is geographically limited at its southern bounds due to the cessation of suitable spinifex (Triodia spp.) habitats, and so further extension of the range southwards is not possible. Sympatric desert species may be similarly affected, and we suggest that SDMs will be a useful tool in helping to predict the effects of climate change on their distributions.Goldfields Environmental Management Group (GEMG

Molecular diet analysis of two african free-tailed bats (molossidae) using high throughput sequencing.

Given the diversity of prey consumed by insectivorous bats, it is difficult to discern the composition of their diet using morphological or conventional PCR-based analyses of their faeces. We demonstrate the use of a powerful alternate tool, the use of the Roche FLX sequencing platform to deep-sequence uniquely 5' tagged insect-generic barcode cytochrome c oxidase I (COI) fragments, that were PCR amplified from faecal pellets of two free-tailed bat species Chaerephon pumilus and Mops condylurus (family: Molossidae). Although the analyses were challenged by the paucity of southern African insect COI sequences in the GenBank and BOLD databases, similarity to existing collections allowed the preliminary identification of 25 prey families from six orders of insects within the diet of C. pumilus, and 24 families from seven orders within the diet of M. condylurus. Insects identified to families within the orders Lepidoptera and Diptera were widely present among the faecal samples analysed. The two families that were observed most frequently were Noctuidae and Nymphalidae (Lepidoptera). Species-level analysis of the data was accomplished using novel bioinformatics techniques for the identification of molecular operational taxonomic units (MOTU). Based on these analyses, our data provide little evidence of resource partitioning between sympatric M. condylurus and C. pumilus in the Simunye region of Swaziland at the time of year when the samples were collected, although as more complete databases against which to compare the sequences are generated this may have to be re-evaluated.This study was supported by Bat Conservation International, Etatsraad Georg Bestle og Hustrus Mindelegat and the Oticon Fonden (KB and CN), the Danish Council for Independent Research Natural Sciences ‘Skou’ award (MTPG), and a Natural Sciences and Engineering Research Council of Canada post-doctoral fellowship (ELC). These funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. This study was also supported by the Royal Swaziland Sugar Corporation, who provided field assistance and therefore had a role in data collection

Mitigating the impact of Bats in historic churches: The response of Natterer's Bats Myotis nattereri to artificial roosts and deterrence

© 2016 Zeale et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Bats frequently roost in historic churches, and these colonies are of considerable conservation value. Inside churches, bat droppings and urine can cause damage to the historic fabric of the building and to items of cultural significance. In extreme cases, large quantities of droppings can restrict the use of a church for worship and/or other community functions. In the United Kingdom, bats and their roosts are protected by law, and striking a balance between conserving the natural and cultural heritage can be a significant challenge. We investigated mitigation strategies that could be employed in churches and other historic buildings to alleviate problems caused by bats without adversely affecting their welfare or conservation status. We used a combination of artificial roost provision and deterrence at churches in Norfolk, England, where significant maternity colonies of Natterer's bats Myotis nattereri damage church features. Radio-tracking data and population modelling showed that excluding M. nattereri from churches is likely to have a negative impact on their welfare and conservation status, but that judicious use of deterrents, especially high intensity ultrasound, can mitigate problems caused by bats. We show that deterrence can be used to move bats humanely from specific roosting sites within a church and limit the spread of droppings and urine so that problems to congregations and damage to cultural heritage can be much reduced. In addition, construction of bespoke roost spaces within churches can allow bats to continue to roost within the fabric of the building without flying in the church interior. We highlight that deterrence has the potential to cause serious harm toM. nattereri populations if not used judiciously, and so the effects of deterrents will need careful monitoring, and their use needs strict regulation

Molecular diagnosis of bird-mediated pest consumption in tropical farmland

Biodiversity loss will likely have surprising and dramatic consequences for human wellbeing. Identifying species that benefit society represents a critical first step towards predicting the consequences of biodiversity loss. Though natural predators prevent billions of dollars in agricultural pest damage annually, characterizing which predators consume pests has proven challenging. Emerging molecular techniques may illuminate these interactions. In the countryside of Costa Rica, we identified avian predators of coffee’s most damaging insect pest, the coffee berry borer beetle (Coleoptera:Scolytidae Hypothenemus hampeii), by assaying 1430 fecal samples of 108 bird species for borer DNA. While feeding trials confirmed the efficacy of our approach, detection rates were low. Nevertheless, we identified six species that consume the borer. These species had narrow diet breadths, thin bills, and short wings; traits shared with borer predators in other systems. Borer predators were not threatened; therefore, safeguarding pest control necessitates managing species beyond those at risk of regional extinction by maintaining populations in farmland habitats. Generally, our results demonstrate potential for pairing molecular methods with ecological analyses to yield novel insights into species interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/2193-1801-3-630) contains supplementary material, which is available to authorized users

High diversity of picornaviruses in rats from different continents revealed by deep sequencing

Outbreaks of zoonotic diseases in humans and livestock are not uncommon, and an important component in containment of such emerging viral diseases is rapid and reliable diagnostics. Such methods are often PCR-based and hence require the availability of sequence data from the pathogen. Rattus norvegicus (R. norvegicus) is a known reservoir for important zoonotic pathogens. Transmission may be direct via contact with the animal, for example, through exposure to its faecal matter, or indirectly mediated by arthropod vectors. Here we investigated the viral content in rat faecal matter (n=29) collected from two continents by analyzing 2.2 billion next-generation sequencing reads derived from both DNA and RNA. Among other virus families, we found sequences from members of the Picornaviridae to be abundant in the microbiome of all the samples. Here we describe the diversity of the picornavirus-like contigs including near-full-length genomes closely related to the Boone cardiovirus and Theiler's encephalomyelitis virus. From this study, we conclude that picornaviruses within R. norvegicus are more diverse than previously recognized. The virome of R. norvegicus should be investigated further to assess the full potential for zoonotic virus transmission

Molecular tools reveal diets of insectivorous birds from predator fecal matter

The emerging field of molecular scatology enables critical testing of food web theory. The non-invasive application of molecular tools allows for sequencing of prey DNA from predator fecal matter, evaluating diet breadth and foraging guild. While insectivorous bats are obscure foragers compared to most insectivorous birds, more is known about which arthropod species bats consume because molecular techniques have been optimized for mammalian systems, not avian physiology. Our research objective was to use molecular tools to detect arthropod prey in the fecal matter of an insectivorous avian predator. We used Western Bluebird (Sialia mexicana) as a model predator due to its generalist foraging strategy. We compared two fecal DNA extraction kits: (1) Qiagen's DNA stool mini kits, used widely in dietary studies on bats and (2) Zymo's Soil/Fecal DNA MiniPrep kits, not currently cited in the molecular scatology literature. We successfully extracted DNA only with the Zymo kit, amplified mitochondrial cytochrome oxidase c subunit I genes, sequenced, and identified the arthropod prey. A spiked PCR experiment showed evidence of possible inhibitors remaining in the Qiagen kit extractions. Overall, arthropod prey from seven different orders and five different classes were identified. We discuss the ecological implications of these data and suggest areas of future research applying molecular techniques to avian fecal matter. Consistent methodological advancement will enable molecular scatology to identify ecosystem services provided by insectivorous birds, develop ecological theory, and inform predator conservation efforts. © 2013 Springer Science+Business Media Dordrecht