Temporal and spatial distribution of phytoplankton with emphasis on Skeletonema costatum in the Mathamuhuri river – estuary (Chakaria mangrove ecosystem), Bangladesh

A total of 91 species under 44 genera were identified among the phytoplankton community during the course of one year's investigation between May 1982 and April 1983. Bacillariophyta was the most dominant group with 72 specie, Chlorophyta 11 spp, Cyanophyta 6 spp and Pyrrophyta was represented by 2 species. The yearly percentage composition of 4 groups of phytoplankton in order of abundance were Bacillariophyta 50.77%, Cyanophyta 47.70%, Chlorophyta 1.5% and Pyrrophyta 0.02%. The highest densities of phytoplankton were recorded in monsoon months (June-July) with a peak in July (31550 cells/l) and the minimum in February (770 cells/1). Higher concentration of phytoplankton was recorded at station 2, nearer to the Chakaria Sundarbans (mangroves), but abundance of phytoplankton showed no significant difference in the two stations (Mann Whitney U test, P=0.64, Z=-0.642, U=64). Phytoplankton population in this area were positively correlated with rainfall (r=0.655, P=<0.5, df.22) and water temperature (r=0.523, P=<0.05). Skeletonema costatum was the dominant member of phytoplankton and occupied 35.23% of the annual population and occurred throughout the period of study except in September and January. Its abundance was recorded during the monsoon months (April- July) with a maximum density (24185 cells/l) in July. No significant correlation was found between abundance of S. costatum and the hydro-meteorological parameters recorded in the Chakaria mangrove area

Improved Core Genes Prediction for Constructing well-supported Phylogenetic Trees in large sets of Plant Species

The way to infer well-supported phylogenetic trees that precisely reflect the evolutionary process is a challenging task that completely depends on the way the related core genes have been found. In previous computational biology studies, many similarity based algorithms, mainly dependent on calculating sequence alignment matrices, have been proposed to find them. In these kinds of approaches, a significantly high similarity score between two coding sequences extracted from a given annotation tool means that one has the same genes. In a previous work article, we presented a quality test approach (QTA) that improves the core genes quality by combining two annotation tools (namely NCBI, a partially human-curated database, and DOGMA, an efficient annotation algorithm for chloroplasts). This method takes the advantages from both sequence similarity and gene features to guarantee that the core genome contains correct and well-clustered coding sequences (\emph{i.e.}, genes). We then show in this article how useful are such well-defined core genes for biomolecular phylogenetic reconstructions, by investigating various subsets of core genes at various family or genus levels, leading to subtrees with strong bootstraps that are finally merged in a well-supported supertree.Comment: 12 pages, 7 figures, IWBBIO 2015 (3rd International Work-Conference on Bioinformatics and Biomedical Engineering

Massive, Absorption-selected Galaxies at Intermediate Redshifts

The nature of absorption-selected galaxies and their connection to the general galaxy population have been open issues for more than three decades, with little information available on their gas properties. Here we show, using detections of carbon monoxide (CO) emission with the Atacama Large Millimeter/submillimeter Array (ALMA), that five of seven high-metallicity, absorption-selected galaxies at intermediate redshifts, $z \approx 0.5-0.8$, have large molecular gas masses, $M_{\rm Mol} \approx (0.6 - 8.2) \times 10^{10} \: {\rm M}_\odot$ and high molecular gas fractions ($f_{\rm Mol} \equiv \: M_{\rm Mol}/(M_\ast + M_{\rm Mol}) \approx 0.29-0.87)$. Their modest star formation rates (SFRs), $\approx (0.3-9.5) \: {\rm M}_\odot$ yr$^{-1}$, then imply long gas depletion timescales, $\approx (3 - 120)$ Gyr. The high-metallicity absorption-selected galaxies at $z \approx 0.5-0.8$ appear distinct from populations of star-forming galaxies at both $z \approx 1.3-2.5$, during the peak of star formation activity in the Universe, and lower redshifts, $z \lesssim 0.05$. Their relatively low SFRs, despite the large molecular gas reservoirs, may indicate a transition in the nature of star formation at intermediate redshifts, $z \approx 0.7$.Comment: 8 pages, 3 figures; accepted for publication in Astrophysical Journal Letters. Minor changes to match the version in press in ApJ

On Fairness, Diversity and Randomness in Algorithmic Decision Making

Consider a binary decision making process where a single machine learning classifier replaces a multitude of humans. We raise questions about the resulting loss of diversity in the decision making process. We study the potential benefits of using random classifier ensembles instead of a single classifier in the context of fairness-aware learning and demonstrate various attractive properties: (i) an ensemble of fair classifiers is guaranteed to be fair, for several different measures of fairness, (ii) an ensemble of unfair classifiers can still achieve fair outcomes, and (iii) an ensemble of classifiers can achieve better accuracy-fairness trade-offs than a single classifier. Finally, we introduce notions of distributional fairness to characterize further potential benefits of random classifier ensembles

EXPERIMENTAL INVESTIGATION OF THE THERMOPHYSICAL CHARACTERISTICS OF THE MELATIC MEAT

This article presents some results of experimental studies of the thermophysical characteristics of melon pulp. The thermophysical characteristics of the pulp of melons of different varieties in the temperature range from 20 º to 70 ºС are determined. It has been established that thermal conductivity and thermal diffusivity increases with increasing temperature almost linearly. Empirical expressions for the coefficients of thermal conductivity and thermal diffusivity are obtained. These data will be useful in the thermal calculation of drying installations in the production of dried mel

PREVALENCE AND ANTHELMINTIC EFFICACY OF ABAMECTIN AGAINST GASTROINTESTINAL PARASITES IN HORSES

The prevalence and anthelmintic efficacy of Abamectin against gastrointestinal parasites under field conditions in Faisalabad (Punjab, Pakistan) was studied in 100 horses. The overall prevalence of gastrointestinal parasites was 75%, including Strongylus spp. (50%), Oxyuris equi (12%), Parascaris equorum (8%) and mixed infection (5%). Among these naturally infected animals, 15 were selected. These horses were assigned to three groups on the basis of prevalent species of gastrointestinal parasites. Each group had five animals, comprising four treatment horses and a control horse. Abamectin was evaluated against these gastrointestinal parasites with a single shot at the dose rate of 0.2 mg/kg body weight administered through subcutaneous route which resulted in 98% reduction in faecal egg count after day 14 post-treatment. Non-treated horses remained positive for gastrointestinal parasites. No adverse reactions were observed during the experimental period. It was concluded that Abamectin is highly effective against gastrointestinal parasites in horses

Assessment of SnFe2O4 nanoparticles for potential application in theranostics: Synthesis, characterization, in vitro, and in vivo toxicity

In this research, tin ferrite (SnFe2O4 ) NPs were synthesized via hydrothermal route using ferric chloride and tin chloride as precursors and were then characterized in terms of morphology and structure using Fourier-transform infrared spectroscopy (FTIR), Ultraviolet–visible spectroscopy (UV-Vis), X-ray power diffraction (XRD), Scanning electron microscopy (SEM), Transmission electron microscopy (TEM), and Brunauer–Emmett–Teller (BET) method. The obtained UV-Vis spectra was used to measure band gap energy of as-prepared SnFe2O4 NPs. XRD confirmed the spinel structure of NPs, while SEM and TEM analyses disclosed the size of NPs in the range of 15–50 nm and revealed the spherical shape of NPs. Moreover, energy dispersive X-ray spectroscopy (EDS) and BET analysis was carried out to estimate elemental composition and specific surface area, respectively. In vitro cytotoxicity of the synthesized NPs were studied on normal (HUVEC, HEK293) and cancerous (A549) human cell lines. HUVEC cells were resistant to SnFe2O4 NPs; while a significant decrease in the viability of HEK293 cells was observed when treated with higher concentrations of SnFe2O4 NPs. Furthermore, SnFe2O4 NPs induced dramatic cytotoxicity against A549 cells. For in vivo study, rats received SnFe2O4 NPs at dosages of 0, 0.1, 1, and 10 mg/kg. The 10 mg/kg dose increased serum blood urea nitrogen and creatinine compared to the controls (P < 0.05). The pathology showed necrosis in the liver, heart, and lungs, and the greatest damages were related to the kidneys. Overall, the in vivo and in vitro experiments showed that SnFe2O4 NPs at high doses had toxic effects on lung, liver and kidney cells without inducing toxicity to HUVECs. Further studies are warranted to fully elucidate the side effects of SnFe2O4 NPs for their application in theranostics

Detection of Inositol Polyphosphates by Polyacrylamide Gel Electrophoresis (PAGE) under Apoptotic Conditions in Cultured SW480 Cells

Inositol phosphates are naturally occurring compounds that regulate diverse cellular processes including apoptosis. Apoptosis is a mechanism by which cells undergo natural death to maintain cellular homeostasis. It causes cell death in areas during a state that is harmful to the body. It also regulates cellular development. Previous work has shown that exogenously administered, as well as endogenously manipulated inositol phosphates bring about apoptotic changes. It has been demonstrated that cellular levels of inositol phosphates, particularly higher inositol phosphates such as inositol hexakis-phosphate (IP6) and diphosphoinositol pentakis-phosphate (IP7) levels increase during apoptotic conditions. In this study, we have attempted to separate and identify higher inositol phosphates such as IP6 by polyacrylamide gel electrophoresis (PAGE) and shown that changes in inositol phosphate levels can be detected by this method. Cells were treated with etoposide to induce apoptosis, and apoptotic cells were observed under UV light following ethidium bromide/acridine orange staining. This staining showed that IP3 - IP6 induced apoptosis in SW480 cells with IP6 being the most effective inducing agent. The extracts from apoptotic and control cells were then loaded onto the polyacrylamide gel and run along with standard IP6. Results showed that IP6 could be detected using the PAGE method and that cellular levels of IP6 were increased in SW480 cells, in which apoptosis had been induced by etoposide. Our results demonstrated that this technique could be utilized instead of the laborious radioactive labeling and HPLC separation method to study the changes in cellular levels of inositol phosphates particularly IP6

Foliar epidermal anatomy and its systematic implication within the genus Sida L. (malvaceae)

Micro morphological investigations of the foliar epidermal anatomy, particularly the diversity and distribution of glandular and eglandular trichomes on leaves of Sida alba L., S. alii S. Abedin var. alii, S.cordata (Burm. F.) Brss, S. mysorensis Wight and Arn, S. ovata Forssk. S. spinosa L and S.yunnanensis S.Y.Hu have been carried out to assess the systematic relevance of epidermal features and trichome diversity within the genus Sida L. Configuration of epidermal cells is polygonal to irregular with smooth or undulating outline. Leaves are amphistomatic and amphitrichomic. Six diverse morphological types of glandular and eglandular foliar trichomes are described. Stellate and peltate types of trichomes are characteristically found in all taxa studied. S. alii and S.spinosa are distinct in having long-stalked and short-stalked capitate trichomes. S. mysorensis is characterized by multicellular uniseriate trichomes, but these are not observed in other taxa of genus Sida. The results of foliar epidermal anatomy, especially type, distribution and structure of foliar trichomes are of high systematic value in this genus of family Malvaceae