789 research outputs found
Global DNA hypomethylation prevents consolidation of differentiation programs and allows reversion to the embryonic stem cell state.
DNA methylation patterns change dynamically during mammalian development and lineage specification, yet scarce information is available about how DNA methylation affects gene expression profiles upon differentiation. Here we determine genome-wide transcription profiles during undirected differentiation of severely hypomethylated (Dnmt1⁻/⁻) embryonic stem cells (ESCs) as well as ESCs completely devoid of DNA methylation (Dnmt1⁻/⁻;Dnmt3a⁻/⁻;Dnmt3b⁻/⁻ or TKO) and assay their potential to transit in and out of the ESC state. We find that the expression of only few genes mainly associated with germ line function and the X chromosome is affected in undifferentiated TKO ESCs. Upon initial differentiation as embryoid bodies (EBs) wild type, Dnmt1⁻/⁻ and TKO cells downregulate pluripotency associated genes and upregulate lineage specific genes, but their transcription profiles progressively diverge upon prolonged EB culture. While Oct4 protein levels are completely and homogeneously suppressed, transcription of Oct4 and Nanog is not completely silenced even at late stages in both Dnmt1⁻/⁻ and TKO EBs. Despite late wild type and Dnmt1⁻/⁻ EBs showing a much higher degree of concordant expression, after EB dissociation and replating under pluripotency promoting conditions both Dnmt1⁻/⁻ and TKO cells, but not wild type cells rapidly revert to expression profiles typical of undifferentiated ESCs. Thus, while DNA methylation seems not to be critical for initial activation of differentiation programs, it is crucial for permanent restriction of developmental fate during differentiation
Cluster Perturbation Theory for Hubbard models
Cluster perturbation theory is a technique for calculating the spectral
weight of Hubbard models of strongly correlated electrons, which combines exact
diagonalizations on small clusters with strong-coupling perturbation theory at
leading order. It is exact in both the strong- and weak-coupling limits and
provides a good approximation to the spectral function at any wavevector.
Following the paper by S\'en\'echal et al. (Phys. Rev. Lett. {\bf 84}, 522
(2000)), we provide a more complete description and derivation of the method.
We illustrate some of its capabilities, in particular regarding the effect of
doping, the calculation of ground state energy and double occupancy, the
disappearance of the Fermi surface in the Hubbard model, and so on. The
method is applicable to any model with on-site repulsion only.Comment: 11 pages, 10 figures (RevTeX 4
Interrelation of Superconducting and Antiferromagnetic Gaps in High-Tc Compounds: a Test Case for a Microscopic Theory
Recent angle resolved photoemission (ARPES) data, which found evidence for a
d-wave-like modulation of the antiferromagnetic gap, suggest an intimate
interrelation between the antiferromagnetic insulator and the superconductor
with its d-wave gap. This poses a new challenge to microscopic descriptions,
which should account for this correlation between, at first sight, very
different states of matter. Here, we propose a microscopic mechanism which
provides a definite correlation between these two different gap structures: it
is shown that a projected SO(5) theory, which aims at unifying
antiferromagnetism and d-wave superconductivity via a common symmetry principle
while explicitly taking the Mott-Hubbard gap into account, correctly describes
the observed gap characteristics. Specifically, it accounts for both the
dispersion and the order of magnitude difference between the antiferromagnetic
gap modulation and the superconducting gap.Comment: 8 pages, 5 figure
A pulsed, mono-energetic and angular-selective UV photo-electron source for the commissioning of the KATRIN experiment
The KATRIN experiment aims to determine the neutrino mass scale with a
sensitivity of 200 meV/c^2 (90% C.L.) by a precision measurement of the shape
of the tritium -spectrum in the endpoint region. The energy analysis of
the decay electrons is achieved by a MAC-E filter spectrometer. To determine
the transmission properties of the KATRIN main spectrometer, a mono-energetic
and angular-selective electron source has been developed. In preparation for
the second commissioning phase of the main spectrometer, a measurement phase
was carried out at the KATRIN monitor spectrometer where the device was
operated in a MAC-E filter setup for testing. The results of these measurements
are compared with simulations using the particle-tracking software
"Kassiopeia", which was developed in the KATRIN collaboration over recent
years.Comment: 19 pages, 16 figures, submitted to European Physical Journal
Personal pack display and active smoking at outdoor café strips: assessing the impact of plain packaging 1 year postimplementation
Aims: We observed tobacco pack display and smoking at outdoor venues over three summers to assess changes in their prevalence following Australia's introduction of plain tobacco packaging with larger pictorial health warnings. Methods: Between January and April 2012 (preplain packaging (PP)), 2013 (early post-PP) and 2014 (1 year post-PP), we counted patrons, smokers and tobacco packs at cafés, restaurants and bars with outdoor seating. Pack type (branded, plain or unknown) and orientation were noted. Rates of active smoking, pack display and pack orientation were analysed using multilevel Poisson regression. Results: Prevalence of pack display among patrons declined from pre-PP (1 pack per 8.7 patrons) to early post-PP (1 pack per 10.4), and remained low 1 year post-PP (1 pack per 10.3). This appeared to be driven by a sustained decline in active smoking post-PP (pre-PP: 8.4% of patrons were smoking; early post-PP: 6.4%; 1 year post-PP: 6.8%). Notably, active smoking declined more in venues with children present than in those without. While early post-PP, plain packs were less often displayed face-up (74.0%) and more often concealed (8.9%) than branded packs pre-PP (face-up: 85.2%; concealed: 4.0%), this was not sustained 1 year post-PP (face-up: 85.7%; concealed: 4.4%). Also, external case use increased from pre-PP (1.2%) to early post-PP (3.5%), but returned to pre-PP levels 1 year post-PP (1.9%). Conclusions: This study demonstrated a sustained reduction in visibility of tobacco products and smoking in public, particularly in the presence of children, from pre-PP to 1 year post-PP. This effect is likely to reduce smoking-related social norms, thereby weakening an important influence on smoking uptake and better supporting quit attempts.Meghan Zacher, Megan Bayly, Emily Brennan, Joanne Dono, Caroline Miller, Sarah Durkin, Michelle Scollo, Melanie Wakefiel
The spectral weight of the Hubbard model through cluster perturbation theory
We calculate the spectral weight of the one- and two-dimensional Hubbard
models, by performing exact diagonalizations of finite clusters and treating
inter-cluster hopping with perturbation theory. Even with relatively modest
clusters (e.g. 12 sites), the spectra thus obtained give an accurate
description of the exact results. Thus, spin-charge separation (i.e. an
extended spectral weight bounded by singularities) is clearly recognized in the
one-dimensional Hubbard model, and so is extended spectral weight in the
two-dimensional Hubbard model.Comment: 4 pages, 5 figure
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