31 research outputs found

    Near-atomic cryo-electron microscopy structures of varicella-zoster virus capsids

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    VZV是一种广泛存在并且具有高度传染性的人类α-疱疹病毒。初次感染VZV可导致水痘,人群普遍易感(感染率约为61%~100%)。该病毒可在背根神经节潜伏感染,持续终生。夏宁邵教授团队长期开展VZV相关基础与新型疫苗研究,通过系统和精细探索建立了高效的VZV规模化培养和病毒颗粒纯化技术体系,成功获得高质量的VZV颗粒样品。首次揭示了疱疹病毒α家族的水痘-带状疱疹病毒(VZV)不同类型核衣壳的近原子分辨率结构,阐明了VZV核衣壳不同组成蛋白的相互作用网络与衣壳装配机制,可为进一步开展新型载体疫苗设计及抗病毒药物等研究提供重要支持。 我校博士后王玮、高级工程师郑清炳、博士生潘德全和俞海副教授为该论文共同第一作者,我校夏宁邵教授、程通副教授、李少伟教授以及美国罗格斯大学朱桦(Hua Zhu)教授、加利福尼亚大学洛杉矶分校周正洪(Z. Hong Zhou)教授为该论文的共同通讯作者。【Abstract】Varicella-zoster virus (VZV) is a medically important human herpesvirus that causes chickenpox and shingles, but its cell-associated nature has hindered structure studies. Here we report the cryo-electron microscopy structures of purified VZV A-capsid and C-capsid, as well as of the DNA-containing capsid inside the virion. Atomic models derived from these structures show that, despite enclosing a genome that is substantially smaller than those of other human herpesviruses, VZV has a similarly sized capsid, consisting of 955 major capsid protein (MCP), 900 small capsid protein (SCP), 640 triplex dimer (Tri2) and 320 triplex monomer (Tri1) subunits. The VZV capsid has high thermal stability, although with relatively fewer intra- and inter-capsid protein interactions and less stably associated tegument proteins compared with other human herpesviruses. Analysis with antibodies targeting the N and C termini of the VZV SCP indicates that the hexon-capping SCP—the largest among human herpesviruses—uses its N-terminal half to bridge hexon MCP subunits and possesses a C-terminal flexible half emanating from the inner rim of the upper hexon channel into the tegument layer. Correlation of these structural features and functional observations provide insights into VZV assembly and pathogenesis and should help efforts to engineer gene delivery and anticancer vectors based on the currently available VZV vaccine.This research was supported by grants from the National Science and Technology Major Projects for Major New Drugs Innovation and Development (no. 2018ZX09711003-005-003), the National Science and Technology Major Project of Infectious Diseases (no. 2017ZX10304402), the National Natural Science Foundation of China (no. 81871648, 81601762), the Research Unit of Frontier Technology of Structural Vaccinology of Chinese Academy of Medical Sciences (no. 2019RU022) and the US National Institutes of Health (DE025567/028583). 该研究获得了国家自然科学基金、新药创制国家科技重大专项和传染病防治国家科技重大专项等资助

    Robust estimation of bacterial cell count from optical density

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    Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

    Uniform estimate and strong convergence of minimizers of a p-energy functional with penalization

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    This article concerns the asymptotic behavior of minimizers of a p-energy functional with penalization as a parameter epsilon approaches zero. By establishing W1,pW^{1,p} uniform estimates, we obtain W1,pW^{1,p} convergence of the minimizer to a p-harmonic map

    A note on p(x)-harmonic maps

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    This article is concerned with L^{p(x)} estimates of the gradient of p(x)-harmonic maps. It is known that p(x)-harmonic maps are the weak solutions of a system with natural growth conditions, but it is difficult to use the classical elliptic techniques to find gradient estimates. In this article, we use the monotone inequality to show that the minimum p(x)-energy can be expressed by the L^{p(x)} norm of a gradient of a function Phi, which is a weak solution of a single equation

    Chiral Primary Amine/Ketone Cooperative Catalysis for Asymmetric α-Hydroxylation with Hydrogen Peroxide

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    Carbonyl and amine are yin and yang in organocatalysis that mutually activate and transform each other. As intrinsically reacting partners, carbonyl and amine tend to condensate, depleting their individual activity when employed as catalysts. Though widely established as prominent catalytic strategies, aminocatalysis and carbonyl catalysis seems not coexist well and a cooperative amine/carbonyl dual catalysis remains virtually unknown. Here we report a cooperative primary amine and ketone dual catalysis in the asymmetric α-hydroxylation with H2O2. Besides participating in the typical enamine catalytic cycle, the chiral primary amine catalyst was found to work cooperatively with a ketone catalyst to activate H2O2 via an oxaziridine intermediate derived from in-situ generated ketimine intermediate. The resulted enamine-oxaziridine coupling then facilitated highly-controlled hydroxylation of β-ketocarbonyls that are not possible with other catalytic methods. The dual catalytic approach allows for highly enantioselective α-hydroxylation of a broad range of β-ketocarbonyls. Particularly, late-stage hydroxylation for peptidyl amide or chiral esters can also be achieved with high stereoselectivity. With its operational simplicity and mild conditions, this cooperative amine/ketone catalysis provides a new strategy in catalytic activation of H2O2 and expands the domain of typical amine and carbonyl catalysis to include those challenging transformations.</p

    Numerical Study on the Long-Term Performance and Load Imbalance Ratio for Medium-Shallow Borehole Heat Exchanger System

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    To contribute to the goal of carbon neutralization, the closed-loop borehole heat exchanger system is widely applied to use geothermal energy for building cooling and heating. In this work, a new type of medium-shallow borehole heat exchanger (MSBHE) is proposed, which is coaxial type and has a depth range between 200 m to 500 m. To investigate the long-term performance of MSBHE in the area with unbalanced cooling and heating load of buildings and the sustainable load imbalance ratio under different design parameters, a comprehensive numerical model is established. The results show that the drilling depth significantly influences the sustainable load imbalance ratio of MSBHE. As the drilling depth is increased from 200 m to 500 m, the load imbalance ratio of the MSBHE increases from 20.76% to 60.29%. In contrast, the load imbalance ratio is always kept at the same level with different inlet velocities and operation modes. Furthermore, in a 9-MSBHE array system, the heat exchanger located in the middle of the array has the lowest load imbalance ratio of 48.97%, which is 15.98% lower than the borehole in the edge location. This is caused by the significant influence of the shifted-load phenomenon among MSBHEs in an array system. The findings of the work imply that this newly proposed MSBHE can sustain a notable load imbalance ratio, which is particularly applicable to the areas with a strong imbalance of annual building load

    A Novel Grid-Forming Strategy for Self-Synchronous PMSG under Nearly 100% Renewable Electricity

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    The demand for decarbonization calls for building up a nearly 100% renewable electricity resulting in Grid-forming (GFM) capability requirements. The foregoing paradigm shifts from synchronous AC systems to converter-based systems that need to remain stable and self-synchronous while providing GFM services. However, as this article’s analysis in the introduction, achieving such goals inevitably necessitates the implementation of a PLL controller and energy storage in a wind turbine, whereas it is not suitable to operate in a weak energy system. To tackle this issue, a novel grid-forming method is proposed. The suggested idea calls for creating a DC voltage controller in a grid-side converter that mimics inertia response and applying a Rotor kinetic energy storage (RKES) controller in a Generator-side converter. Moreover, a coordinated controller of RKES controllers and conventional low voltage ride-through (LVRT) is proposed to gain increases in dynamic performance and maintain grid-forming capabilities in the transient process. Extensive modeling, experimental results based on a semi-physical platform, and an actual wind farm demonstration project are provided to validate the proposed controls. The results demonstrate the effectiveness of the presented method when applied to the future 100% renewable electricity

    Near-atomic cryo-electron microscopy structures of varicella-zoster virus capsids

    No full text
    Varicella-zoster virus (VZV) is a medically important human herpesvirus that causes chickenpox and shingles, but its cell-associated nature has hindered structure studies. Here we report the cryo-electron microscopy structures of purified VZV A-capsid and C-capsid, as well as of the DNA-containing capsid inside the virion. Atomic models derived from these structures show that, despite enclosing a genome that is substantially smaller than those of other human herpesviruses, VZV has a similarly sized capsid, consisting of 955 major capsid protein (MCP), 900 small capsid protein (SCP), 640 triplex dimer (Tri2) and 320 triplex monomer (Tri1) subunits. The VZV capsid has high thermal stability, although with relatively fewer intra- and inter-capsid protein interactions and less stably associated tegument proteins compared with other human herpesviruses. Analysis with antibodies targeting the N and C termini of the VZV SCP indicates that the hexon-capping SCP-the largest among human herpesviruses-uses its N-terminal half to bridge hexon MCP subunits and possesses a C-terminal flexible half emanating from the inner rim of the upper hexon channel into the tegument layer. Correlation of these structural features and functional observations provide insights into VZV assembly and pathogenesis and should help efforts to engineer gene delivery and anticancer vectors based on the currently available VZV vaccine
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