Desktop software for patch-clamp raw binary data conversion and preprocessing

Via a graphical user interface, raw binary data files can be converted into several kinds of ASCII text files for further analysis, with several pre-processing options. The parameters can also be viewed, modified and exported into ASCII files by a user-friendly Explorer style window. In this study, the desktop software, called PCDReader along with a novel class module, called clsPulseData, directly reads raw data along with the parameters recorded from HEKA instruments without any other program support. The real-time data loading technique and optimized memory management programming makes PCDReader a fast and efficient tool

Spermidine enhances heat tolerance of rice seeds during mid-filling stage and promote subsequent seed germination

IntroductionHeat stress is a vital factor which restricts rice seed quality and yield. However, the response mechanism to heat stress in the mid filling stage of rice seed is unclear.MethodsIn the present study we integrated phenotypic analysis with biochemical, hormone, and gene expression analysis in order to explore technologies for improving rice seeds heat tolerance and subsequent seed germination.ResultsSpermidine (Spd) application effectively alleviated the damage of heat stress treatment during mid-filling stage (HTM, 12-20 days after pollination) on seed development, promoted subsequent seed germination and seedlings establishment. Spd significantly increased seed dry weight, starch and amylose contents during seed development under heat stress, and improved seed germinate, seedlings establishment and seedling characteristics during germination time. Biochemical analysis indicated that, HTM significantly decreased the activities of several starch synthase enzymes and led to a decrease in starch content. While Spd treatment significantly enhanced the activities of ADP-glucose pyrophosphorylas and granule-bound starch synthase, as well as the corresponding-genes expressions in HTM rice seeds, resulting in the increases of amylose and total starch contents. In addition, Spd significantly increased the catalase and glutathione reductase activities together with corresponding-genes expressions, and lowered the overaccumulation of H2O2 and malondialdehyde in HTM seeds. In the subsequent seed germination process, HTM+Spd seeds exhibited dramatically up-regulated levels of soluble sugars, glucose, ATP and energy charges. Consistently, HTM+Spd seeds showed significantly increased of α-amylose and α-glucosidase activities as well as corresponding-genes expressions during early germination. Moreover, HTM evidently increased the abscisic acid (ABA) content, decreased the gibberellin (GA) content, and accordingly significantly declined the GA/ABA ratio during early rice seeds germination. However, Spd treatment did not significantly affect the metabolism of GA and ABA in seed germination stage.DiscussionThe present study suggested that Spd treatment could effectively alleviate the negative impact of HTM on seed development and the subsequent seed germination, which might be closely correlated with starch synthesis and antioxidant defense during seed filling period, starch decomposition and energy supply in seed germination period

Influence of bimodal non-basal texture on microstructure characteristics, texture evolution and deformation mechanisms of AZ31 magnesium alloy sheet rolled at liquid-nitrogen temperature

Cryogenic rolling experiments have been conducted on the AZ31 magnesium (Mg) alloy sheet with bimodal non-basal texture, which is fabricated via the newly developed equal channel angular rolling and continuous bending process with subsequent annealing (ECAR-CB-A) process. Results demonstrate that this sheet shows no edge cracks until the accumulated thickness reduction reaches about 18.5%, which is about 105.6% larger than that of the sheet with traditional basal texture. Characterization experiments including optical microstructure (OM), X-ray diffractometer (XRD), and electron backscatter diffraction (EBSD) measurements are then performed to explore the microstructure characteristics, texture evolution and deformation mechanisms during cryogenic rolling. Experimental observations confirm the occurrence of abundant {10–12} extension twins (ETs), twin-twin interactions among {10–12} ET variants and {10–12}-{10–12} double twins (DTs). The twinning behaviors as for {10–12} ETs are responsible for the concentration of c-axes of grains towards normal direction (ND) and the formation of transverse direction (TD)-component texture at the beginning of cryogenic rolling. The twinning behaviors with respect to {10–12}-{10–12} DTs are responsible for the disappearance of TD-component texture at the later stage of cryogenic rolling. The involved deformation mechanisms can be summarized as follows: Firstly {10–12} ETs dominate the plastic deformation. Subsequently, dislocation slip, especially basal slip, starts to sustain more plastic strain, while {10–12} ETs occur more frequently and enlarge continuously, resulting in the formation of twin-twin interaction among {10–12} ET variants. With the increasing rolling passes, {10–12}-{10–12} DTs incorporate in the plastic deformation and dislocation slip serves as the major one to sustain plastic strain. The activities of basal slip, {10–12} ETs and {10–12}-{10–12} DTs benefit in accommodating the plastic strain in sheet thickness, which contributes to the improved rolling formability in AZ31 Mg alloy sheet with bimodal non-basal texture during cryogenic rolling

A global map of p53 transcription-factor binding sites in the human genome

10.1016/j.cell.2005.10.043Cell1241207-219CELL

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function