78 research outputs found
Species-specific responses to drought, salinity and their interactions in Populus euphratica and P. pruinosa seedlings
Aims Drought and salinity are severe abiotic stress factors, which limit plant growth and productivity, particularly in desert regions. In this study, we employed two desert poplars, Populus euphratica Oliver and Populus pruinosa Schrenk seedlings, to compare their tolerance to drought, salinity and combined stress. Methods We investigated species-specific responses of P. euphratica and P. pruinosa in growth, photosynthetic capacity and pigment contents, nonstructural carbohydrate concentrations, Cl- allocation, osmotic regulation and the accumulation of reactive oxygen species (ROS) under drought, salinity and the combined stress. Important Findings Populus pruinosa exhibited greater growth inhibitory effects, photosynthesis decline, stomata! closure and ROS accumulation, and lower antioxidant enzyme activities and osmotic regulation compared with P. euphratica under drought, salinity and especially under their combined stress. On the other hand, salt-stressed P. euphratica plants restricted salt transportation from roots to leaves, and allocated more Cl- to coarse roots and less to leaves, whereas salt-stressed P. pruinosa allocated more Cl- to leaves. It was shown that there is species-specific variation in these two desert poplars, and P. pruinosa suffers greater negative effects compared with P. euphratica under drought, salinity and especially under the combined stress. Therefore, in ecological restoration and afforestation efforts, species-specific responses and tolerances of these two poplar species to drought and salinity should be considered under climate change with increasing drought and soil salinity developing.Peer reviewe
Study on cutting performance of SiCp/Al composite using textured YG8 carbide tool
Precision machining of SiCp/Al composites is a challenge due to the existence of reinforcement phase in this material. This work focuses on the study of the textured tools’ cutting performance on SiCp/Al composite, as well as the comparison with non-textured tools. The results show that the micro-pit textured tool can reduce the cutting force by 5–13% and cutting length by 9–39%. Compared with non-textured tools, the cutting stability of the micro-pit textured tools is better. It is found that the surface roughness is the smallest (0.4 μm) when the texture spacing is 100 μm, and the residual stress can be minimized to around 15 MPa in the case of texture spacing 80 μm. In addition, the SiC particles with size of around 2–12 μm in the SiCp/Al composite may play a supporting role between the texture and the chips, which results in three-body friction, thereby reducing tool wear, sticking, and secondary cutting phenomenon. At the same time, some SiC particles enter into the micro-pit texture, so that the number of residual particles on the surface is reduced and the friction between the tool and the surface then decreases, which improves the surface roughness, and reduces the surface residual stress.TU Berlin, Open-Access-Mittel - 202
Research on the micro-hole texture forming of PCD tool surface
Based on the research on the forming mechanism of textured PCD tool surface, the nanosecond laser is used to study the influence of laser machining parameters on the size and topography of PCD tool surface micro texture. The micro-hole texture is prepared on the surface of the PCD tool, and a single factor experiment is designed to study the influence of laser power, pulse frequency and defocusing amount on the micro-hole texture. The results show that, the micro-hole diameter increases gradually with the laser power, but decreases with the pulse frequency; the overall micro-hole diameter tends to increase with the defocus. The pulse frequency has the greatest impact on the micro-hole diameter, followed by the defocus amount, and finally the laser power. The influence of different parameters on the surface recast layer is also completely different. As a result, the surface and laser power are the main factors that affect the surface recast layer
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting
Crustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of major importance in ecology and fisheries. Here we report the genome sequence of the Pacific white shrimp Litopenaeus vannamei, covering similar to 1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes and a high proportion of simple sequence repeats (>23.93%). The expansion of genes related to vision and locomotion is probably central to its benthic adaptation. Frequent molting of the shrimp may be explained by an intensified ecdysone signal pathway through gene expansion and positive selection. As an important aquaculture organism, L. vannamei has been subjected to high selection pressure during the past 30 years of breeding, and this has had a considerable impact on its genome. Decoding the L. vannamei genome not only provides an insight into the genetic underpinnings of specific biological processes, but also provides valuable information for enhancing crustacean aquaculture
High through-put sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies
Understanding the genetic and evolutionary basis of animal morphological diversity will require comparative developmental studies that use new model organisms. This necessitates development of tools for the study of genetics and also the generation of sequence information of the organism to be studied. The development of next generation sequencing technology has enabled quick and cost effective generation of sequence information. Parhyale hawaiensis has emerged as a model organism of choice due to the development of advanced molecular tools, thus P. hawaiensis genetic information will help drive functional studies in this organism.
Here we present a transcriptome and miRNA collection generated using next generation sequencing platforms. We generated approximately 1.7 million reads from a P. hawaiensis cDNA library constructed from embryos up to the germ band stage. These reads were assembled into a dataset comprising 163,501 transcripts.
Using the combined annotation of Annot8r and pfam2go, Gene Ontology classifications was assigned to 20,597 transcripts. Annot8r was used to provide KEGG orthology to our transcript dataset. A total of 25,292 KEGG pathway assignments were defined and further confirmed with reciprocal blast against the NCBI nr protein database. This has identified many P. hawaiensis gene orthologs of key conserved signalling pathways involved in development. We also generated small RNA sequences from P. hawaiensis, identifying 55 conserved miRNAs. Sequenced small RNAs that were not annotated by stringent comparison to mirBase were used to search the Daphnia pulex for possible novel miRNAs. Using a conservative approach, we have identified 51 possible miRNA candidates conserved in the Daphnia pulex genome, which could be potential crustacean/arthropod specific miRNAs. Our study presents gene and miRNA discovery in a new model organism that does not have a sequenced genome. The data provided by our work will be valuable for the P. hawaiensis community as well as the wider evolutionary developmental biology community
Fast and Cost-Effective Mining of Microsatellite Markers Using NGS Technology: An Example of a Korean Water Deer Hydropotes inermis argyropus
Transcriptome Profiling of Testis during Sexual Maturation Stages in Eriocheir sinensis Using Illumina Sequencing
The testis is a highly specialized tissue that plays dual roles in ensuring fertility by producing spermatozoa and hormones. Spermatogenesis is a complex process, resulting in the production of mature sperm from primordial germ cells. Significant structural and biochemical changes take place in the seminiferous epithelium of the adult testis during spermatogenesis. The gene expression pattern of testis in Chinese mitten crab (Eriocheir sinensis) has not been extensively studied, and limited genetic research has been performed on this species. The advent of high-throughput sequencing technologies enables the generation of genomic resources within a short period of time and at minimal cost. In the present study, we performed de novo transcriptome sequencing to produce a comprehensive transcript dataset for testis of E. sinensis. In two runs, we produced 25,698,778 sequencing reads corresponding with 2.31 Gb total nucleotides. These reads were assembled into 342,753 contigs or 141,861 scaffold sequences, which identified 96,311 unigenes. Based on similarity searches with known proteins, 39,995 unigenes were annotated based on having a Blast hit in the non-redundant database or ESTscan results with a cut-off E-value above 10−5. This is the first report of a mitten crab transcriptome using high-throughput sequencing technology, and all these testes transcripts can help us understand the molecular mechanisms involved in spermatogenesis and testis maturation
A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance
Sharpness evaluation of microscopic detection image for micro parts
According to the characteristics of micro parts microscopic detection image, including the image texture is similar, the edge information is too little and the gray distribution Range is limited, based on the basic principles of algorithm, analyzes the traditional sharpness evaluation function. Aiming at the defect that the traditional sharpness evaluation function cannot have both high sensitivity and noise immunity, an algorithm based on local variance information entropy is proposed. The method uses the local variance to weight the self-information of each gray level, on the one hand, it makes up for the lack of spatial information of information entropy and avoids misjudgement of sharpness; on the other hand, it can increase the weights of clear region pixels when they participate in the calculation of information, while reducing the weights of background and noise region pixels, thereby improve the function sensitivity. The experimental results show that compared with the traditional sharpness evaluation function, the local variance information entropy function not only has high sensitivity, but also has better noise immunity and is suitable for actual auto-focusing systems
The role of noggin in regulation of high glucose-induced apoptosis and insulin secretion in INS-1 rat beta cells
Objective(s):The purpose of this study was to investigate the effects of Noggin on high glucose-induced apoptosis and insulin secretion in pancreatic beta cells. Materials and Methods: Different concentrations of glucose were used to examine their effects on INS-1 rat beta cells in vitro. When specific siRNA targeting Noggin and recombinant Noggin were added, apoptosis and insulin secretion were measured, respectively to determine their effects in INS-1 cells. Results: Glucose stimulated the expression of Noggin in a dose-dependent manner. Knockdown of Noggin further increased apoptosis and reduced insulin secretion when INS-1 cells were exposed to high glucose. Conversely, administration of recombinant Noggin significantly reduced apoptotic cell number, and promoted insulin secretion. Finally, treatment with inhibitor of Smad phosphorylation exerted similar effects on cell apoptosis and insulin production to Noggin administration in glucose-treated INS-1 cells. Conclusion: Our findings indicate that Noggin inhibits apoptosis and promotes insulin secretion in pancreatic beta cells through the inhibition of Smad signaling. Gene therapy of delivering Noggin may facilitate the treatment for patients with type 2 diabetes mellitus
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