The upstream area of the chicken α-globin gene domain is transcribed in both directions in the same cells

AbstractIt was demonstrated previously that in erythroid chicken cells an extended upstream area of the α-globin gene domain is transcribed in both directions as a part of ggPRX gene and a part of a full domain transcript of the α-globin gene domain. Here, we show that both DNA chains of the above-mentioned region are transcribed in the same cells and that the corresponding transcripts coexist in nuclei. The data obtained suggest that cells possess a molecular mechanism which in some cases prevents the formation of dsRNA and subsequent destruction of both transcripts in spite of the presence of complementary RNA chains in the cell nucleus

Development-dependent changes in the tight DNA-protein complexes of barley on chromosome and gene level

<p>Abstract</p> <p>Background</p> <p>The tightly bound to DNA proteins (TBPs) is a protein group that remains attached to DNA with covalent or non-covalent bonds after its deproteinisation. The functional role of this group is as yet not completely understood. The main goal of this study was to evaluate tissue specific changes in the TBP distribution in barley genes and chromosomes in different phases of shoot and seed development. We have: 1. investigated the TBP distribution along <it>Amy32b </it>and <it>Bmy1 </it>genes encoding low pI α-amylase A and endosperm specific β-amylase correspondingly using oligonucleotide DNA arrays; 2. characterized the polypeptide spectrum of TBP and proteins with affinity to TBP-associated DNA; 3. localized the distribution of DNA complexes with TBP (TBP-DNA) on barley 1H and 7H chromosomes using mapped markers; 4. compared the chromosomal distribution of TBP-DNA complexes to the distribution of the nuclear matrix attachment sites.</p> <p>Results</p> <p>In the <it>Amy32b </it>gene transition from watery ripe to the milky ripeness stage of seed development was followed by the decrease of TBP binding along the whole gene, especially in the promoter region and intron II. Expression of the <it>Bmy1 </it>gene coupled to ripening was followed by release of the exon III and intron III sequences from complexes with TBPs. Marker analysis revealed changes in the association of chromosome 1H and 7H sites with TBPs between first leaf and coleoptile and at Zadoks 07 and Zadoks 10 stages of barley shoot development. Tight DNA-protein complexes of the nuclear matrix and those detected by NPC-chromatography were revealed as also involved in tissue- and development-dependent transitions, however, in sites different from TBP-DNA interactions. The spectrum of TBPs appeared to be organ and developmental-stage specific. Development of the first leaf and root system (from Zadoks 07 to Zadoks 10 stage) was shown as followed by a drastic increase in the TBP number in contrast to coleoptile, where the TBPs spectrum became poor during senescence. It was demonstrated that a nuclear protein of low molecular weight similar to the described TBPs possessed a high affinity to the DNA involved in TBP-DNA complexes.</p> <p>Conclusion</p> <p>Plant development is followed by redistribution of TBP along individual genes and chromosomes.</p

Functional muscle impairment in facioscapulohumeral muscular dystrophy is correlated with oxidative stress and mitochondrial dysfunction

International audienceFacioscapulohumeral muscular dystrophy (FSHD),the most frequent muscular dystrophy, is an autosomal dominant disease. In most individuals with FSHD, symptoms are restricted to muscles of the face, arms, legs, and trunk. FSHD is genetically linked to contractions of the D4Z4 repeat array causing activation of several genes.One of these maps in the repeat itself and expresses the DUX4 (the double homeobox 4) transcription factor causing a gene deregulation cascade. In addition, analyses of the RNA or protein expression profiles in muscle have indicated deregulations in the oxidative stress response. Since oxidative stress affects peripheral muscle function, we investigated mitochondrial function and oxidative stress in skeletal muscle biopsies and blood samples from patients with FSHD and age-matched healthy controls, and evaluated their association with physical performances.We show that specifically, oxidative stress (lipid peroxidation and protein carbonylation), oxidative damage (lipofuscin accumulation), and antioxidant enzymes (catalase, copper–zinc-dependent super- oxide dismutase, and glutathione reductase) were higher in FSHD than in control muscles. FSHD muscles also presented abnormal mitochondrial function (decreased cytochrome c oxidase activity and reduced ATP synthesis). In addition, the ratio between reduced (GSH) and oxidized glutathione (GSSG) was strongly decreased in all FSHD blood samples as a consequence of GSSG accumulation. Patients with FSHD also had reduced systemic antioxidative response molecules, such as low levels of zinc (a SOD cofactor), selenium (a GPx cofactor involved in the elimination of lipid peroxides), and vitamin C. Half of them had a low ratio of gamma/alpha tocopherol and higher ferritin concentrations. Both systemic oxidative stress and mitochondrial dysfunction were correlated with functional muscle impairment. Mitochondrial ATP production was significantly correlated with both quadriceps endurance (TLimQ) and maximal voluntary contraction (MVCQ) values (rho¼0.79, P¼0.003; rho¼0.62, P¼0.05, respectively). The plasma concentration of oxidized glutathione was negatively correlated with the TLimQ, MVCQ values, and the 2-min walk distance (MWT) values (rho¼0.60, P¼0.03; rho¼0.56, P¼0.04; rho¼0.93, Po0.0001, respectively). Our data characterized oxidative stress in patients with FSHD and demonstrated a correlation with their peripheral skeletal muscle dysfunction. They suggest that antioxidants that might modulate or delay oxidative insult maybe useful in maintaining FSHD muscle functions

Ring-Like Distribution of Constitutive Heterochromatin in Bovine Senescent Cells

Background: Cells that reach ‘‘Hayflick limit’ ’ of proliferation, known as senescent cells, possess a particular type of nuclear architecture. Human senescent cells are characterized by the presence of highly condensed senescent associated heterochromatin foci (SAHF) that can be detected both by immunostaining for histone H3 three-methylated at lysine 9 (H3K9me3) and by DAPI counterstaining. Methods: We have studied nuclear architecture in bovine senescent cells using a combination of immunofluorescence and 3D fluorescent in-situ hybridization (FISH). Results: Analysis of heterochromatin distribution in bovine senescent cells using fluorescent in situ hybridization for pericentric chromosomal regions, immunostaining of H3K9me3, centromeric proteins CENP A/B and DNA methylation showed a lower level of heterochromatin condensation as compared to young cells. No SAHF foci were observed. Instead, we observed fibrous ring-like or ribbon-like heterochromatin patterns that were undetectable with DAPI counterstaining. These heterochromatin fibers were associated with nucleoli

A Functional Role for 4qA/B in the Structural Rearrangement of the 4q35 Region and in the Regulation of FRG1 and ANT1 in Facioscapulohumeral Dystrophy

The number of D4Z4 repeats in the subtelomeric region of chromosome 4q is strongly reduced in patients with Facio-Scapulo-Humeral Dystrophy (FSHD). We performed chromosome conformation capture (3C) analysis to document the interactions taking place among different 4q35 markers. We found that the reduced number of D4Z4 repeats in FSHD myoblasts was associated with a global alteration of the three-dimensional structure of the 4q35 region. Indeed, differently from normal myoblasts, the 4qA/B marker interacted directly with the promoters of the FRG1 and ANT1 genes in FSHD cells. Along with the presence of a newly identified transcriptional enhancer within the 4qA allele, our demonstration of an interaction occurring between chromosomal segments located megabases away on the same chromosome 4q allows to revisit the possible mechanisms leading to FSHD

High Resolution Genome-Wide Analysis of Chromosomal Alterations in Burkitt's Lymphoma

Additional chromosomal abnormalities are currently detected in Burkitt's lymphoma. They play major roles in the progression of BL and in prognosis. The genes involved remain elusive. A whole-genome oligonucleotide array CGH analysis correlated with karyotype and FISH was performed in a set of 27 Burkitt's lymphoma-derived cell lines and primary tumors. More than half of the 145 CNAs<2 Mb were mapped to Mendelian CNVs, including GSTT1, glutathione s-transferase and BIRC6, an anti-apoptotic protein, possibly predisposing to some cancers. Somatic cell line-specific CNVs localized to the IG locus were consistently observed with the 244 K aCGH platform. Among 136 CNAs >2 Mb, gains were found in 1q (12/27), 13q (7/27), 7q (6/27), 8q(4/27), 2p (3/27), 11q (2/27) and 15q (2/27). Losses were found in 3p (5/27), 4p (4/27), 4q (4/27), 9p (4/27), 13q (4/27), 6p (3/27), 17p (3/27), 6q (2/27),11pterp13 (2/27) and 14q12q21.3 (2/27). Twenty one minimal critical regions (MCR), (range 0.04–71.36 Mb), were delineated in tumors and cell lines. Three MCRs were localized to 1q. The proximal one was mapped to 1q21.1q25.2 with a 6.3 Mb amplicon (1q21.1q21.3) harboring BCA2 and PIAS3. In the other 2 MCRs, 1q32.1 and 1q44, MDM4 and AKT3 appeared as possible drivers of these gains respectively. The 13q31.3q32.1 <89.58–96.81> MCR contained an amplicon and ABCC4 might be the driver of this amplicon. The 40 Kb 2p16.1 <60.96–61> MCR was the smallest gained MCR and specifically encompassed the REL oncogene which is already implicated in B cell lymphomas. The most frequently deleted MCR was 3p14.1 <60.43–60.53> that removed the fifth exon of FHIT. Further investigations which combined gene expression and functional studies are essential to understand the lymphomagenesis mechanism and for the development of more effective, targeted therapeutic strategies

Réorganisation nucléaire et régulation de la transcription dans le lymphome du manteau (Implication du nucléole et de la nucléoline )

LE KREMLIN-B.- PARIS 11-BU Méd (940432101) / SudocSudocFranceF

Remaniement nucléaire dans les lymphocytes B provoqué par les virus EBV et VIH-1

Le lymphome de Burkitt (BL) est due dans 80% des cas à une translocation chromosomique t(8;14)(q24;q32). Cette translocation marque l évènement initial de la transformation maligne d une cellule B normale, par délocalisation de l oncogène CMYC à proximité du locus du gène codant pour la chaîne lourde d immunoglobuline IGH par le mécanisme de réparation de l ADN NHEJ durant l hypermutation somatique (SMH). La probabilité de cette translocation est inversement proportionnelle à la distance qui sépare les loci portés par les deux chromosomes. La translocation (8;14) (q24;q32) qui apparaît durant les étapes de différentiation des lymphocytes B est encore plus importante chez les patients infectés par le virus Epstein-Barr (EBV) et le virus de l immunodéficience humaine (VIH-1). L objectif de notre étude est de déterminer les origines possibles de la translocation t(8;14) (q24;q32)dans les lymphocytes B normaux humains. Nous nous sommes intéressés tout d abord à la dynamique de la localisation nucléaire des loci IGH et CMYC dans les lymphocytes B activés. Nous avons particulièrement étudié l impact des virus EBV et VIH-1 sur l organisation des gènes IGH et CMYC.Nous avons utilisé la technique d hybridation in situ à fluorescence FISH pour la détection de CMYC (8q24) et IGH (14q32). Dans les lymphocytes B naïfs, CMYC est localisé du côté de la périphérie nucléaire, en revanche IGH est central, les deux loci sont complétement distants dans le noyau.L activation des lymphocytes B induisait une augmentation de la colocalisation IGH-CMYC. La proximité physique entre les deux loci augmente la probabilité de leur translocation durant la SHM et favorise la t(8;14) (q24;q32) dans les lymphocytes B. Nous avons montré que les virus EBV et VIH-1ont un effet important sur la délocalisation IGH-CMYC dans les lymphocytes B. Nous avons aussi déterminé une molécule virale VIH-1 qui intervenait aussi dans la dérégulation de la localisation nucléaire des gènes IGH et CMYC. Nous avons déterminé deux mécanismes différents et indépendants impliqués dans la dynamique des loci IGH et CMYC : le premier mécanisme intervient dans le processus de développement normal des lymphocytes B, et le deuxième mécanisme dépend des virus ainsi que des molécules virales (particulièrement la Tat-HIV-1).Eighty percent of Burkitt's lymphomas (BL) cases bear translocation t(8;14)(q24;q32). Thistranslocation is the initial event in malignant transformation of normal B-cell and derives from nonhomologousend joining of the oncogene CMYC to the immunoglobulin heavy chain locus IGH duringSomatic Hypermutation (SHM) of IGH. The probability of this translocation is inversely proportionalto the distance between the loci of involved chromosomes. The translocation t(8;14)(q24;q32) occursduring normal development of B-lymphocytes and more probable in patients infected with Epstein-Barr virus (EBV) and the human immunodeficiency virus (HIV-1).The subject of this study was to determine the possible origin of the translocation t(8;14)(q24;q32) inhuman normal B-lymphocytes. We followed the dynamics of the nuclear localization of IGH andCMYC genes in activated B-lymphocytes. We payed particular attention to the impact of EBV andHIV-1 viruses on dynamics of both IGH and CMYC. We applied Fluorescence in situ hybridization(FISH) for detection of CMYC (8q24) and IGH (14q32). In naïve B-cells CMYC is mainly localized inthe periphery of nucleus, whereas IGH is preferentially localized in the nuclear centre, i.e. these lociare distanced by a radius of cell nucleus. Activated B-lymphocytes displayed dramatic increase ofnumber of cells with colocalized IGH and CMYC. Close physical proximity of CMYC to IGH duringSHM amplifies the probability of occurance of translocation t(8;14)(q24;q32) in human Blymphocytes.Interestingly, we observed even more pronounced impact of EBVand HIV-1onproximity of IGH and CMYC. Finaly, among the molecules of HIV-1 we revealed those which possessthe most regulative role on dynamics of both IGH and CMYC. Our results suggest about twoindependent mechanisms of IGH and CMYC dynamics: the first is appropriate for normal developmentof B-lymphocytes and the second depends on virus and viral molecules, such as transactivator of viraltranscription HIV Tat.PARIS11-SCD-Bib. électronique (914719901) / SudocSudocFranceF