Enhanced heat extraction from hot-dry-rock geothermal reservoirs due to interacting secondary thermal cracks. Final report

How the fluid circulating through the main hydraulic fracture and the thermally-induced secondary, growing, interacting cracks affects the time-varying temperature, deformations, stresses, thermal crack geometry, water flow rates through the main and thermal cracks, reservoir coolant outlet temperature, and reservoir thermal power of the cracked geothermal reservoir is investigated. First, a simplified version of the proposed hot-dry-rock reservoir is considered. A closed-form solution of the rock temperature without thermal crack was found and substituted into SAP-IV computer code to calculate the stresses. These stresses being superposed with earth stresses and fluid pressure were used in conjunction with the fracture mechanics criterion to determine the initiation of secondary thermal crack. After the initiation of secondary thermal crack, the rock temperature was then calculated by a two-dimensional heat conduction program AYER. The detailed procedures for carrying out these steps are listed. Solutions developed are applied to studying the time-varying temperature field, thermal stresses and crack geometry produced, and additional heat power generated in the reservoir. Conclusions were discussed and summarized. (MHR

Minimum-error discrimination between symmetric mixed quantum states

We provide a solution of finding optimal measurement strategy for distinguishing between symmetric mixed quantum states. It is assumed that the matrix elements of at least one of the symmetric quantum states are all real and nonnegative in the basis of the eigenstates of the symmetry operator.Comment: 10 page

Screening of compactin-resistant microorganisms capable of converting compactin to pravastatin

A simple method of using compactin for effective screening of microbial strains with high hydroxylation activity at the 6 beta position of compactin was developed. Agar plates containing different carbon sources and 500 mu g compactin mL(-1) were used to screen the microorganisms that can convert compactin to pravastatin. About 100 compactin-resistant strains were isolated from the Basal agar containing 7% (w/v) mannitol as a carbon source, in which two bacteria, Pseudomocardia autotrophica BCRC 12444 and Streptomyces griseolus BCRC 13677, capable of converting compactin to pravastatin with the yield of 20 and 32% (w/w), respectively, were found. High-performance liquid chromatography using C-18 column and two sequential mobile phases, 30% and 50% (v/v) acetonitrile, was also established to simultaneously determine the concentration of compactin and pravastatin in the culture broth. As such, about 2% of target microorganisms could be obtained from the screening program

Application of simulation technique on debris flow hazard zone delineation: a case study in the Daniao tribe, Eastern Taiwan

Typhoon Morakot struck Taiwan in August 2009 and induced considerable disasters, including large-scale landslides and debris flows. One of these debris flows was experienced by the Daniao tribe in Taitung, Eastern Taiwan. The volume was in excess of 500 000 m(3), which was substantially larger than the original design mitigation capacity. This study considered large-scale debris flow simulations in various volumes at the same area by using the DEBRIS-2D numerical program. The program uses the generalized Julien and Lan (1991) rheological model to simulate debris flows. In this paper, the sensitivity factor considered on the debris flow spreading is the amount of the debris flow initial volume. These simulated results in various amounts of debris flow initial volume demonstrated that maximal depths of debris flows were almost deposited in the same area, and also revealed that a 20% variation in estimating the amount of total volume at this particular site results in a 2.75% variation on the final front position. Because of the limited watershed terrain, the hazard zones of debris flows were not expanded. Therefore, the amount of the debris flow initial volume was not sensitive

A Non-coding RNA of Insect HzNV-1 Virus Establishes Latent Viral Infection through MicroRNA

Heliothis zea nudivirus-1 (HzNV-1) is an insect virus previously known as Hz-1 baculovirus. One of its major early genes, hhi1, is responsible for the establishment of productive viral infection; another gene, pag1, which expresses a non-coding RNA, is the only viral transcript detectable during viral latency. Here we showed that this non-coding RNA was further processed into at least two distinct miRNAs, which targeted and degraded hhi1 transcript. This is a result strikingly similar to a recent report that herpes simplex virus produces tightly-regulated latent specific miRNAs to silence its own key early transcripts. Nevertheless, proof for the establishment of viral latency by miRNA is still lacking. We further showed that HzNV-1 latency could be directly induced by pag1-derived miRNAs in cells infected with a pag1-deleted, latency-deficient virus. This result suggests the existence of a novel mechanism, where miRNAs can be functional for the establishment of viral latency

A single amino acid substitution in PthA of Xanthomonas axonopodis pv. citri altering canker formation on grapefruit leaves

The typical citrus canker lesions produced by Xanthomonas axonopodis pv. citri are erumpent, callus-like, with water-soaked margins. Three novel atypical symptom-producing variants of X. axonopodis pv. citri were described recently in Taiwan. Only the variant designated as A(f) type produces typical erumpent canker lesions on Mexican lime (Citrus aurantifolia) but induces flat necrotic with water-soaked margin lesions on grapefruit leaves (C. paradisi). Two homologous pthA were cloned and characterized from strains XW19 (a typical canker lesion producing strain) and XW47 (a strain of A(f) type). The pthA homolog from XW19 was transformed into XW47. The transformant of XW47 induced typical erumpent canker lesions on grapefruit leaves. Sequence analyses of transformants XW19 and XW47 revealed over 99% homology in nucleotide and deduced amino acid sequences compared with pthA homologs deposited in GenBank. The amino acid residues located at positions 49, 286, 742 and 767 of PthA were different between XW47 and XW19. The PthA mutants with a single amino acid substitution at each of these four positions were constructed by site-directed mutagenesis. Modified PthA (S286P) from XW47 in transformant 47SP induced erumpent canker lesions on grapefruit leaves, whereas another modified PthA (P286S) from XW19 in transformant 47PS only induced flat necrotic lesions. These results suggested that a single amino acid substitution from either serine to proline or proline to serine at position 286 of PthA can alter canker formation by X. axonopodis pv. citri on grapefruit leaves

A Four-Gene Signature from NCI-60 Cell Line for Survival Prediction in Non-Small Cell Lung Cancer

Purpose: Metastasis is the main cause of mortality in non-small cell lung cancer (NSCLC) patients. Genes that can discriminate the invasion ability of cancer cells may become useful candidates for clinical outcome prediction. We identify invasion-associated genes through computational and laboratorial approach that supported this idea in NSCLC. Experimental Design: We first conducted invasion assay to characterize the invasion abilities of NCI-60 lung cancer cell lines. We then systematically exploited NCI-60 microarray databases to identify invasion-associated genes that showed differential expression between the high and the low invasion cell line groups. Furthermore, using the microarray data of Duke lung cancer cohort (GSE 3141), invasion-associated genes with good survival prediction potentials were obtained. Finally, we validated the findings by conducting quantitative PCR assay on an in-house collected patient group (n = 69) and by using microarray data from two public western cohorts (n = 257 and 186). Results: The invasion-associated four-gene signature (ANKRD49, LPHN1, RABAC1, and EGLN2) had significant prediction in three validation cohorts (P = 0.0184, 0.002, and 0.017, log-rank test). Moreover, we showed that four-gene signature was an independent prognostic factor (hazard ratio, 2.354, 1.480, and 1.670; P = 0.028, 0.014, and 0.033), independent of other clinical covariates, such as age, gender, and stage. Conclusion: The invasion-associated four-gene signature derived from NCI-60 lung cancer cell lines had good survival prediction power for NSCLC patients. (Clin Cancer Res 2009;15(23):7309-15

Acetogenin and Prenylated Flavonoids from Helminthostachys zeylanica with Inhibitory Activity on Superoxide Generation and Elastase Release by Neutrophils

One new acetogenin, 6-hydroxy-8-pentadecyloxocane-2,7-dione (1), and four new prenylated flavonoids, 4 '' a,5 '',6 '',7 '',8 '',8 '' a-hexahydro-5,3',4'-trihydroxy-5 '',5 '',8 '' a-trimethyl-4H-chromeno[2 '',3 '': 7,6] flavone (2), 4 '' a,5 '',6 '',7 '',8 '',8 '' a-hexahydro5,3', 4',-trihydroxy-5 '',5 '',8 '' a-trimethyl-4Hchromeno[2 '', 3 '': 7,8] flavone (3), 2-(3,4-dihydroxyphenyl)6-((2,2-dimethyl-6-methylenecyclohexyl) methyl)-5,7-dihydroxy-chroman-4-one (4), and 2-(3,4-dihydroxy-2-[(2,6,6-trimethylcyclohex-2-enyl) methyl] phenyl)-3,5,7-trihydroxy-4H-chromen-4-one (5), together with six known compounds, were isolated and purified from the rhizomes of Helminthostachys zeylanica by column chromatography and high performance liquid chromatography (HPLC) via bioactivity-guided fractionation isolation. The structures of the new isolates were elucidated by spectroscopic methods. Compounds 1, 3, and 5 showed inhibitory activities on either superoxide anion generation or elastase release by human neutrophils in response to formyl-L-methionyl-L-leucyl-L-phenylalanine/cytochalasin B (FMLP/CB)