Algorithms to automatically quantify the geometric similarity of anatomical surfaces

We describe new approaches for distances between pairs of 2-dimensional surfaces (embedded in 3-dimensional space) that use local structures and global information contained in inter-structure geometric relationships. We present algorithms to automatically determine these distances as well as geometric correspondences. This is motivated by the aspiration of students of natural science to understand the continuity of form that unites the diversity of life. At present, scientists using physical traits to study evolutionary relationships among living and extinct animals analyze data extracted from carefully defined anatomical correspondence points (landmarks). Identifying and recording these landmarks is time consuming and can be done accurately only by trained morphologists. This renders these studies inaccessible to non-morphologists, and causes phenomics to lag behind genomics in elucidating evolutionary patterns. Unlike other algorithms presented for morphological correspondences our approach does not require any preliminary marking of special features or landmarks by the user. It also differs from other seminal work in computational geometry in that our algorithms are polynomial in nature and thus faster, making pairwise comparisons feasible for significantly larger numbers of digitized surfaces. We illustrate our approach using three datasets representing teeth and different bones of primates and humans, and show that it leads to highly accurate results.Comment: Changes with respect to v1, v2: an Erratum was added, correcting the references for one of the three datasets. Note that the datasets and code for this paper can be obtained from the Data Conservancy (see Download column on v1, v2

Signatures of Inelastic Scattering in Coulomb-Blockade Quantum Dots

We calculate the finite-temperature conductance peak-height distributions in Coublomb-blockade quantum dots in the limit where the inelastic scattering rate in the dot is large compared with the mean elastic tunneling rate. The relative reduction of the standard deviation of the peak-height distribution by a time-reversal symmetry-breaking magnetic field, which is essentially temperature-independent in the elastic limit, is enhanced by the inclusion of inelastic scattering at finite temperature. We suggest this quantity as an independent experimental probe for inelastic scattering in closed dots.Comment: 4 pages, 3 eps figures, revtex

From fields to a super-cluster: the role of the environment at z=0.84 with HiZELS

At z=0, clusters are primarily populated by red, elliptical and massive galaxies, while blue, spiral and lower-mass galaxies are common in low-density environments. Understanding how and when these differences were established is of absolute importance for our understanding of galaxy formation and evolution, but results at high-z remain contradictory. By taking advantage of the widest and deepest H-alpha narrow-band survey at z=0.84 over the COSMOS and UKIDSS UDS fields, probing a wide range of densities (from poor fields to rich groups and clusters, including a confirmed super-cluster with a striking filamentary structure), we show that the fraction of star-forming galaxies falls continuously from ~40% in fields to approaching 0% in rich groups/clusters. We also find that the median SFR increases with environmental density, at least up to group densities - but only for low and medium mass galaxies, and thus such enhancement is mass-dependent at z~1. The environment also plays a role in setting the faint-end slope (alpha) of the H-alpha luminosity function. Our findings provide a sharper view on galaxy formation and evolution and reconcile previously contradictory results at z~1: stellar mass is the primary predictor of star formation activity, but the environment also plays a major role.Comment: 5 pages, 4 figures, to appear in the proceedings of JENAM 2010 S2: `Environment and the Formation of Galaxies: 30 years later', ASSP, Springe

Linear conductance in Coulomb-blockade quantum dots in the presence of interactions and spin

We discuss the calculation of the linear conductance through a Coulomb-blockade quantum dot in the presence of interactions beyond the charging energy. In the limit where the temperature is large compared with a typical tunneling width, we use a rate-equations approach to describe the transitions between the corresponding many-body states. We discuss both the elastic and rapid-thermalization limits, where the rate of inelastic scattering in the dot is either small or large compared with the elastic transition rate, respectively. In the elastic limit, we find several cases where a closed solution for the conductance is possible, including the case of a constant exchange interaction. In the rapid-thermalization limit, a closed solution is possible in the general case. We show that the corresponding expressions for the linear conductance simplify for a Hamiltonian that is invariant under spin rotations.Comment: 11 pages, no figures, revtex

Evaluation of two mobile health apps in the context of smoking cessation: qualitative study of cognitive behavioral therapy (CBT) versus non-CBT-based digital solutions.

BACKGROUND: Mobile health (mHealth) apps can offer users numerous benefits, representing a feasible and acceptable means of administering health interventions such as cognitive behavioral therapy (CBT). CBT is commonly used in the treatment of mental health conditions, where it has a strong evidence base, suggesting that it represents an effective method to elicit health behavior change. More importantly, CBT has proved to be effective in smoking cessation, in the context of smoking-related costs to the National Health Service (NHS) having been estimated to be as high as £2.6bn in 2015. Although the evidence base for computerized CBT in mental health is strong, there is limited literature on its use in smoking cessation. This, combined with the cost-effectiveness of mHealth interventions, advocates a need for research into the effectiveness of CBT-based smoking cessation apps. OBJECTIVE: The objective of this study was, first, to explore participants' perceptions of 2 mHealth apps, a CBT-based app, Quit Genius, and a non-CBT-based app, NHS Smokefree, over a variety of themes. Second, the study aimed to investigate the perceptions and health behavior of users of each app with respect to smoking cessation. METHODS: A qualitative short-term longitudinal study was conducted, using a sample of 29 smokers allocated to one of the 2 apps, Quit Genius or Smokefree. Each user underwent 2 one-to-one semistructured interviews, 1 week apart. Thematic analysis was carried out, and important themes were identified. Descriptive statistics regarding participants' perceptions and health behavior in relation to smoking cessation are also provided. RESULTS: The thematic analysis resulted in five higher themes and several subthemes. Participants were generally more positive about Quit Genius's features, as well as about its design and information engagement and quality. Quit Genius users reported increased motivation to quit smoking, as well as greater willingness to continue using their allocated app after 1 week. Moreover, these participants demonstrated preliminary changes in their smoking behavior, although this was in the context of our limited sample, not yet allowing for the finding to be generalizable. CONCLUSIONS: Our findings underscore the use of CBT in the context of mHealth apps as a feasible and potentially effective smoking cessation tool. mHealth apps must be well developed, preferably with an underlying behavioral change mechanism, to promote positive health behavior change. Digital CBT has the potential to become a powerful tool in overcoming current health care challenges. The present results should be replicated in a wider sample using the apps for a longer period so as to allow for generalizability. Further research is also needed to focus on the effect of greater personalization on behavioral change and on understanding the psychological barriers to the adoption of new mHealth solutions

Probing astrophysically important states in the ²⁶Mg nucleus to study neutron sources for the s process

Background: The ²²Ne(α,n) ²⁵Mg reaction is the dominant neutron source for the slow neutron capture process (s process) in massive stars, and contributes, together with C¹³(α,n)O¹⁶, to the production of neutrons for the s process in asymptotic giant branch (AGB) stars. However, the reaction is endothermic and competes directly with ²²Ne(α,γ)²⁶Mg radiative capture. The uncertainties for both reactions are large owing to the uncertainty in the level structure of ²⁶Mg near the α and neutron separation energies. These uncertainties affect the s-process nucleosynthesis calculations in theoretical stellar models. Purpose: Indirect studies in the past have been successful in determining the energies and the γ-ray and neutron widths of the Mg26 states in the energy region of interest. But, the high Coulomb barrier hinders a direct measurement of the resonance strengths, which are determined by the α widths for these states. The goal of the present experiments is to identify the critical resonance states and to precisely measure the α widths by α-transfer techniques. Methods: The α-inelastic scattering and α-transfer measurements were performed on a solid ²⁶Mg target and a ²²Ne gas target, respectively, using the Grand Raiden Spectrometer at the Research Center for Nuclear Physics in Osaka, Japan. The (α,α′) measurements were performed at 0.45°, 4.1°, 8.6°, and 11.1° and the (⁶Li,d) measurements at 0° and 10°. The scattered α particles and deuterons were detected by the focal plane detection system consisting of multiwire drift chambers and plastic scintillators. The focal plane energy calibration allowed the study of ²⁶Mg levels from Eₓ = 7.69–12.06 MeV in the (α,α′) measurement and Eₓ = 7.36–11.32 MeV in the (⁶Li,d) measurement. Results: Six levels (Eₓ = 10717, 10822, 10951, 11085, 11167, and 11317 keV) were observed above the α threshold in the region of interest (10.61–11.32 MeV). The α widths were calculated for these states from the experimental data. The results were used to determine the α-capture induced reaction rates. Conclusion: The energy range above the α threshold in ²⁶Mg was investigated using a high resolution spectrometer. A number of states were observed for the first time in α-scattering and α-transfer reactions. The excitation energies and spin-parities were determined. Good agreement is observed for previously known levels in ²⁶Mg. From the observed resonance levels the Eₓ = 10717 keV state has a negligible contribution to the α-induced reaction rates. The rates are dominated in both reaction channels by the resonance contributions of the states at Ex = 10951, 11167, and 11317 keV. The Eₓ = 11167 keV state has the most appreciable impact on the (α,γ) rate and therefore plays an important role in the prediction of the neutron production in s-process environments

Pion decay constant in quenched QCD with Kogut-Susskind quarks

We present a non-perturbative calculation for the pion decay constant with quenched Kogut-Susskind quarks. Numerical simulations are carried out at $\beta = 6.0$ and 6.2 with various operators extending over all flavors. The renormalization correction is applied for each flavor by computing non-perturbative renormalization constants, and it is compared with a perturbative calculation. We also study the behavior of $f_\pi$ in the continuum limits for both non-perturbative and perturbative calculations. The results in the continuum limit is also discussed.Comment: LATTICE99(matrix elements) 3 pages, 4 eps figure

SOHO/SWAN Observations of Short-period Spacecraft Target Comets

SWAN, the Solar Wind ANisotropies all-sky hydrogen Ly_ camera on the Solar and Heliospheric Observatory spacecraft that makes all-sky images of interplanetary neutral hydrogen, has an ongoing campaign to make special observations of comets, both short- and long-period ones, in addition to the serendipitous observations of comets as part of the all-sky monitoring program. We report here on a study of several short-period comets that were detected by SWAN: 21P/Giacobini-Zinner (1998 and 2005 apparitions), 19P/Borrelly (2001 apparition), 81P/Wild 2 (1997 apparition), and 103P/Hartley 2 (1997 apparition). SWAN observes comets over long continuous stretches of their visible apparitions and therefore provides excellent temporal coverage of the water production. For some of the observations we are also able to analyze an entire sequence of images over many days to several weeks/months using our time-resolved model and extract daily average water production rates over continuous periods of several days to months. The short-term (outburst) and long-term behavior can be correlated with other observations. The overall long-term variation is examined in light of seasonal effects seen in the pre- to post-perihelion differences. For 21P/Giacobini-Zinner and 81P/Wild 2 the activity variations over each apparition were more continuously monitored but nonetheless consistent with previous observations. For 19P/Borrelly we found a very steep variation of water production rates, again consistent with some previous observations, and a variation over six months around perihelion that was reasonably consistent with the spin-axis model of Schleicher et al. and the illumination of the main active areas. During the 1997-1998 apparition of 103P/Hartley 2, the target comet of the EPOXI mission (the Deep Impact extended mission), we found a variation with heliocentric distance (~ r –3.6 ) that was almost as steep as 19P/Borrelly and, given the small measured radius near aphelion, this places a number of possible constraints on the size, shape, and/or distribution active of areas on the surface.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/90820/1/1538-3881_141_4_128.pd