Implications of the Tribolium genome project for pest biology

Implications of the Tribolium genome project for pest biology The universal availability of the complete Tribolium castaneum genome sequence assembly and annotation (Richards et al., 2008) and concomitant development of the versatile Tribolium genome browser, BeetleBase (Kim et al., 2010, http://beetlebase.org/) open new realms of possibility for stored product pest control by greatly simplifying the task of connecting biology and behavior with underlying molecular mechanisms. This genome has enabled sequence similarity searches that have resulted in a flood of new discovery involving thousands of genes with important functions in digestion, osmoregulation, metamorphosis, olfaction, xenobiotic metabolism, vision, and embryonic and larval growth and development. The value of the T. castaneum genome sequence is greatly enhanced by the availability of a sophisticated functional genomic toolkit for laboratory studies of this insect. These tools include high-resolution physical and genetic maps, genomic and cDNA libraries, balancer chromosomes, and effective and reliable techniques for specific knockout of any target gene via RNA interference (RNAi). In this paper we briefly discuss just two areas of Tribolium biology research that are being revitalized by the availability of the genome sequence, namely olfaction and exoskeleton, or “smell and skin”

Cuticular protein with a low complexity sequence becomes cross-linked during insect cuticle sclerotization and is required for the adult molt

Citation: Mun, S., Noh, M. Y., Dittmer, N. T., Muthukrishnan, S., Kramer, K. J., Kanost, M. R., & Arakane, Y. (2015). Cuticular protein with a low complexity sequence becomes cross-linked during insect cuticle sclerotization and is required for the adult molt. Scientific Reports, 5, 11. doi:10.1038/srep10484In the insect cuticle, structural proteins (CPs) and the polysaccharide chitin are the major components. It has been hypothesized that CPs are cross-linked to other CPs and possibly to chitin by quinones or quinone methides produced by the laccase2-mediated oxidation of N-acylcatechols. In this study we investigated functions of TcCP30, the third most abundant CP in protein extracts of elytra (wing covers) from Tribolium castaneum adults. The mature TcCP30 protein has a low complexity and highly polar amino acid sequence. TcCP30 is localized with chitin in horizontal laminae and vertically oriented columnar structures in rigid cuticles, but not in soft and membranous cuticles. Immunoblot analysis revealed that TcCP30 undergoes laccase2-mediated cross-linking during cuticle maturation in vivo, a process confirmed in vitro using recombinant rTcCP30. We identified TcCPR27 and TcCPR18, the two most abundant proteins in the elytra, as putative crosslinking partners of TcCP30. RNAi for the TcCP30 gene had no effect on larval and pupal growth and development. However, during adult eclosion, similar to 70% of the adults were unable to shed their exuvium and died. These results support the hypothesis that TcCP30 plays an integral role as a cross-linked structural protein in the formation of lightweight rigid cuticle of the beetle

Observation of Fermi-surface-dependent nodeless superconducting gaps in Ba0.6K0.4Fe2As2

The recent discovery of superconductivity in iron-arsenic compounds below a transition temperature (Tc) as high as 55K ended the monopoly of copper oxides (cuprates) in the family of high-Tc superconductors. A critical issue in understanding this new superconductor, as in the case of cuprates, is the nature, in particular the symmetry and orbital dependence, of the superconducting gap. There are conflicting experimental results, mostly from indirect measurements of the low energy excitation gap, ranging from one gap to two gaps, from line nodes to nodeless gap function in momentum space. Here we report a direct observation of the superconducting gap, including its momentum, temperature, and Fermi surface (FS) dependence in Ba0.6K0.4Fe2As2 (Tc = 37 K) using angle-resolved photoelectron spectroscopy. We find two superconducting gaps with different values: a large gap (~ 12 meV) on the two small hole-like and electron-like FS sheets, and a small gap (~ 6 meV) on the large hole-like FS. Both gaps, closing simultaneously at the bulk Tc, are nodeless and nearly isotropic around their respective FS sheets. The isotropic pairing interactions are strongly orbital dependent, as the ratio 2Delta/kBTc switches from weak to strong coupling on different bands. The same and surprisingly large superconducting gap due to strong pairing on the two small FS, which are connected by the (pi, 0) spin-density-wave vector in the parent compound, strongly suggests that the pairing mechanism originates from the inter-band interactions between these two nested FS sheets.Comment: 4 figure

Infinity Cancellation, Type I' Compactification and String S-Matrix Functional

Nonvanishing tadpoles and possible infinities associated in the multiparticle amplitudes are discussed with regard to the disk and $RP^{2}$ diagrams of the Type I' compactification. We find that the infinity cancellation of $SO(32)$ type $I$ theory extends to this case as well despite the presence of tadpoles localized in the D-brane world-volume and the orientifold surfaces. Formalism of string S-matrix generating functional is presented to find a consistent string background as c-number source function: we find this only treats the cancellation of the tadpoles in the linearized approximation. Our formalism automatically provides representation of the string amplitudes on this background to all orders in $\alpha'$.Comment: 18 pages, Latex, more references adde

Photoemission study of electronic structure evolution across the metal-insulator transition of heavily B-doped diamond

We studied the electronic structure evolution of heavily B-doped diamond films across the metal-insulator transition (MIT) using ultraviolet photoemission spectroscopy (UPS). From high-temperature UPS, through which electronic states near the Fermi level (E(F)) up to similar to 5k(B)T can be observed (k(B) is the Boltzmann constant and T the temperature), we observed the carrier concentration dependence of spectral shapes near E(F). Using another carrier concentration dependent UPS, we found that the change in energy position of sp-band of the diamond valence band, which corresponds to the shift of E(F), can be explained by the degenerate semiconductor model, indicating that the diamond valence band is responsible for the metallic states for samples with concentrations above MIT. We discuss a possible electronic structure evolution across MIT

Two-dimensional universal conductance fluctuations and the electron-phonon interaction of topological surface states in Bi2Te2Se nanoribbons

The universal conductance fluctuations (UCFs), one of the most important manifestations of mesoscopic electronic interference, have not yet been demonstrated for the two-dimensional surface state of topological insulators (TIs). Even if one delicately suppresses the bulk conductance by improving the quality of TI crystals, the fluctuation of the bulk conductance still keeps competitive and difficult to be separated from the desired UCFs of surface carriers. Here we report on the experimental evidence of the UCFs of the two-dimensional surface state in the bulk insulating Bi2Te2Se nanoribbons. The solely-B\perp-dependent UCF is achieved and its temperature dependence is investigated. The surface transport is further revealed by weak antilocalizations. Such survived UCFs of the topological surface states result from the limited dephasing length of the bulk carriers in ternary crystals. The electron-phonon interaction is addressed as a secondary source of the surface state dephasing based on the temperature-dependent scaling behavior

Growth of High-Mobility Bi2Te2Se Nanoplatelets on hBN Sheets by van der Waals Epitaxy

The electrical detection of the surface states of topological insulators is strongly impeded by the interference of bulk conduction, which commonly arises due to pronounced doping associated with the formation of lattice defects. As exemplified by the topological insulator Bi2Te2Se, we show that via van der Waals epitaxial growth on thin hBN substrates the structural quality of such nanoplatelets can be substantially improved. The surface state carrier mobility of nanoplatelets on hBN is increased by a factor of about 3 compared to platelets on conventional Si/SiOx substrates, which enables the observation of well-developed Shubnikov-de Haas oscillations. We furthermore demonstrate the possibility to effectively tune the Fermi level position in the films with the aid of a back gate

Progress in QCD next-to-leading order calculations

I review progress related to the calculation of QCD jet cross sections at the NLO accuracy. After a short introduction into the theory of NLO calculations, I discuss two recent developments: the calculation of two- and three-jet leptoproduction at the NLO accuracy and the extension of the dipole subtraction method for computing NLO corrections for processes involving massive partons.Comment: 5 pages, 4 figures, LaTeX using JHEP3.cls, Invited talk at the International Europhysics Conference on High-Energy Physics (HEP 2001

Comparative Genomic Analysis of Chitinase and Chitinase-Like Genes in the African Malaria Mosquito (Anopheles gambiae)

Chitinase is an important enzyme responsible for chitin metabolism in a wide range of organisms including bacteria, yeasts and other fungi, nematodes and arthropods. However, current knowledge on chitinolytic enzymes, especially their structures, functions and regulation is very limited. In this study we have identified 20 chitinase and chitinase-like genes in the African malaria mosquito, Anopheles gambiae, through genome-wide searching and transcript profiling. We assigned these genes into eight different chitinase groupings (groups I–VIII). Domain analysis of their predicted proteins showed that all contained at least one catalytic domain. However, only seven (AgCht4, AgCht5-1, AgCht6, AgCht7, AgCht8, AgCht10 and AgCht23) displayed one or more chitin-binding domains. Analyses of stage- and tissue-specific gene expression revealed that most of these genes were expressed in larval stages. However, AgCht8 was mainly expressed in the pupal and adult stages. AgCht2 and AgCht12 were specifically expressed in the foregut, whereas AgCht13 was only expressed in the midgut. The high diversity and complexity of An. gambiae chitinase and chitinase-like genes suggest their diverse functions during different developmental stages and in different tissues of the insect. A comparative genomic analysis of these genes along with those present in Drosophila melanogaster, Tribolium castaneum and several other insect species led to a uniform classification and nomenclature of these genes. Our investigation also provided important information for conducting future studies on the functions of chitinase and chitinase-like genes in this important malaria vector and other species of arthropods