217 research outputs found

    On the use of satellite-derived frontal metrics in time series analyses of shelf-sea fronts, a study of the Celtic Sea

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    Satellite-derived frontal metrics describe characteristics of oceanic thermal fronts, such as their strength or persistence. They are used in marine science to investigate spatio-temporal variability of thermal fronts or in ecological studies to assist in explaining animal distributions. Although these metrics represent highly processed data, which is based on sometimes complex algorithms, little guidance is available on their correct application in quantitative analyses, in particular for non-specialist users. This research aims to improve accurate use of frontal data. This case study investigates the inter--annual and seasonal variability of two tidal mixing fronts on the Celtic Sea shelf, based on monthly time series of daily frontal maps at ∌1km2 resolution from 1990 to 2010. Some metrics are almost identical and can be grouped, e.g. frontal probability, persistence and so-called “composites” (Pearson correlation: r = 0.8–1.0; p < 0.001), whereas the metric describing frontal strength is distinct from other ones. Consequently, strength and metrics of the frontal probability group showed pronounced differences in their inter-annual and seasonal variability: Strength displayed an oscillating pattern between 1990 and 2010 while there were no significant changes in probability over time. In addition, seasonal variability was affected by segments from adjacent fronts, not belonging to the fronts of interest, which could result in biased estimates. Most important, there was a doubling of available satellite imagery between 1990 and 2010 due to a greater number of operational satellites, which negatively affected frontal probability, positively frontal strength and consequently, changed the temporal pattern of both. When using frontal maps for temporal analyses, we should choose the metric carefully, be aware of biased estimates caused by variability from unwanted frontal segments in the data and account for the variable data quantity. This guide on the use of frontal metrics will be helpful to improve correct interpretations of statistical analyses

    Fine-scale hydrodynamics influence the spatio-temporal distribution of harbour porpoises at a coastal hotspot

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    The coastal Runnelstone Reef, off southwest Cornwall (UK), is characterised by complex topography and strong tidal flows and is a known high-density site for harbour porpoise (. Phocoena phocoena); a European protected species. Using a multidisciplinary dataset including: porpoise sightings from a multi-year land-based survey, Acoustic Doppler Current Profiling (ADCP), vertical profiling of water properties and high-resolution bathymetry; we investigate how interactions between tidal flow and topography drive the fine-scale porpoise spatio-temporal distribution at the site. Porpoise sightings were distributed non-uniformly within the survey area with highest sighting density recorded in areas with steep slopes and moderate depths. Greater numbers of sightings were recorded during strong westward (ebbing) tidal flows compared to strong eastward (flooding) flows and slack water periods. ADCP and Conductivity Temperature Depth (CTD) data identified fine-scale hydrodynamic features, associated with cross-reef tidal flows in the sections of the survey area with the highest recorded densities of porpoises. We observed layered, vertically sheared flows that were susceptible to the generation of turbulence by shear instability. Additionally, the intense, oscillatory near surface currents led to hydraulically controlled flow that transitioned from subcritical to supercritical conditions; indicating that highly turbulent and energetic hydraulic jumps were generated along the eastern and western slopes of the reef. The depression and release of isopycnals in the lee of the reef during cross-reef flows revealed that the flow released lee waves during upslope currents at specific phases of the tidal cycle when the highest sighting rates were recorded. The results of this unique, fine-scale field study provide new insights into specific hydrodynamic features, produced through tidal forcing, that may be important for creating predictable foraging opportunities for porpoises at a local scale. Information on the functional mechanisms linking porpoise distribution to static and dynamic physical habitat variables is extremely valuable to the monitoring and management of the species within the context of European conservation policies and marine renewable energy infrastructure development

    Ongoing evolution of submarine canyon rockwalls; examples from the Whittard Canyon, Celtic Margin (NE Atlantic)

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    During the CODEMAP 2015 research expedition to the Whittard Canyon, Celtic Margin (NE Atlantic), a Remotely Operated Vehicle (ROV) gathered High Definition video footage of the canyon rockwalls at depths of approximately 412–4184 m below sea level. This dataset was supplemented by predominantly carbonate rock samples collected during the dives, which were subsequently tested for key physical property characteristics in a geotechnical laboratory. The high-resolution video footage revealed small-scale rockwall slope processes that would not have been visible if shipboard geophysical equipment was solely relied upon during the survey. Of particular interest was the apparent spalling failure of mudstone and chalk rockwalls, with fresh superficial “flaking” scars and an absence of sessile fauna possibly suggesting relatively recent mass-wasting activity. Extensive talus slopes, often consisting of coarse gravel, cobble and occasionally boulder-sized clasts, were observed at the foot of slopes impacted by spalling failures; this debris was rarely colonised by biological communities, which could be an indicator of frequent rockfall events. Bio-erosion was also noted on many of the walls prone to this form of rock slope failure (RSF). As in subaerial equivalents, internal fracture networks appear to control the prevalence of RSF and the geometries of blocks, often resulting in cubic and tabular blocks (0.2–1.0 m scale) of bedrock toppling or sliding out of the cliff face. Tensile strength parameters of carbonate rock samples were determined and these may affect the mass wasting processes observed within the canyon. It was found that carbonate samples which appeared to have a higher mud content, and reduced porosity, produced significantly higher tensile strength values. It is proposed that these stronger, “muddy” carbonate units form the overhanging ledges that often provide an ideal setting for sessile species, such as Acesta excavata clams, to colonise whereas the weaker “pure” carbonate units are more easily eroded and therefore form the undercutting, receding sections of the rockwall

    Comparing the Effect of Naturally Restored Forest and Grassland on Carbon Sequestration and Its Vertical Distribution in the Chinese Loess Plateau

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    Vegetation restoration has been conducted in the Chinese Loess Plateau (CLP) since the 1950s, and large areas of farmland have been converted to forest and grassland, which largely results in SOC change. However, there has been little comparative research on SOC sequestration and distribution between secondary forest and restored grassland. Therefore, we selected typical secondary forest (SF-1 and SF-2) and restored grassland (RG-1 and RG-2) sites and determined the SOC storage. Moreover, to illustrate the factors resulting in possible variance in SOC sequestration, we measured the soil ή13C value. The average SOC content was 6.8, 9.9, 17.9 and 20.4 g kg−1 at sites SF-1, SF-2, RG-1 and RG-2, respectively. Compared with 0–100 cm depth, the percentage of SOC content in the top 20 cm was 55.1%, 55.3%, 23.1%, and 30.6% at sites SF-1, SF-2, RG-1 and RG-2, suggesting a higher SOC content in shallow layers in secondary forest and in deeper layers in restored grassland. The variation of soil ή13C values with depth in this study might be attributed to the mixing of new and old carbon and kinetic fractionation during the decomposition of SOM by microbes, whereas the impact of the Suess effect (the decline of 13C atmospheric CO2 values with the burning of fossil fuel since the Industrial Revolution) was minimal. The soil ή13C value increased sharply in the top 20 cm, which then increased slightly in deeper layers in secondary forest, indicating a main carbon source of surface litter. However the soil ή13C values exhibited slow increases in the whole profile in the restored grasslands, suggesting that the contribution of roots to soil carbon in deeper layers played an important role. We suggest that naturally restored grassland would be a more effective vegetation type for SOC sequestration due to higher carbon input from roots in the CLP

    The importance of Portuguese Continental Shelf Waters to Balearic Shearwaters revealed by aerial census

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    The Balearic shearwater Puffinus mauretanicus is one of the most threatened seabirds in the world. To evaluate the abundance and distribution of Balearic Shearwaters in Portuguese Continental Shelf Waters, during the post-breeding period when migrating birds are outside the Mediterranean Sea, we conducted 5 aerial surveys between 2010 and 2014 (21 survey days covering 62,716 km2). Following a line transect method, observers recorded a total of 181 Balearic Shearwaters sightings. Using Distance sampling software, we estimated an overall species abundance (2010–2014) of 10,182, ranging between 2338 in 2010 and 23,221 individuals in 2012. During the 2012 post-breeding period, the Portuguese Continental Shelf Waters were used by up to 96.8% of the latest migratory population assessment. Considering Balearic Shearwater estimates per sampling block, there was a preference for the North and Center sectors of the Portuguese coast (respectively, 7058 and 1366 individuals) where several SPAs were already designated. We computed the annual and overall habitat predictive models for Balearic Shearwaters using a maximum entropy algorithm on MaxEnt software. In all models, the Balearic shearwater distribution was best predicted by mean chlorophyll concentration. Balearic Shearwaters are mostly present in shallow shelf and coastal waters particularly in the widest portions of the continental shelf. These areas are strongly influenced by upwelling, which concurs with the chlorophyll concentration being the most important predicting variable. Portuguese Continental Shelf Waters are one of the most important post-breeding grounds to the Balearic ShearwaterPortuguese Wildlife Society and projects SafeSea EEA-Grants, FAME (Proj. 2009-1/089) and European Commission’s Life Programme (MarPro NAT/PT/00038). This study was also partly supported by the Portuguese Foundation for Science and Technology (FCT) with Grants SFRH/ BD/30240/2006 to M. Ferreira and SFRH/BD/32841/2006 to P. C. Rodrigues. C. Eira is supported by FCT through CESAM UID/AMB/50017/2013 co-funded by FCT/MEC and FEDER, within PT2020 and Compete 2020 and S. Monteiro is financed by a Grant (BPD/0043/AMB/50017) from UID/AMB/50017/2013. This work was also partially supported by the strategic programme UID/BIA/04050/2013 (POCI-01-0145-FEDER-007569) funded by FCT and by ERDF (COMPETE2020). The authors thank observers and airplane pilots who contributed to this workinfo:eu-repo/semantics/publishedVersio

    The Role of Alpha 6 Integrin in Prostate Cancer Migration and Bone Pain in a Novel Xenograft Model

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    Of the estimated 565,650 people in the U.S. who will die of cancer in 2008, almost all will have metastasis. Breast, prostate, kidney, thyroid and lung cancers metastasize to the bone. Tumor cells reside within the bone using integrin type cell adhesion receptors and elicit incapacitating bone pain and fractures. In particular, metastatic human prostate tumors express and cleave the integrin A6, a receptor for extracellular matrix components of the bone, i.e., laminin 332 and laminin 511. More than 50% of all prostate cancer patients develop severe bone pain during their remaining lifetime. One major goal is to prevent or delay cancer induced bone pain. We used a novel xenograft mouse model to directly determine if bone pain could be prevented by blocking the known cleavage of the A6 integrin adhesion receptor. Human tumor cells expressing either the wildtype or mutated A6 integrin were placed within the living bone matrix and 21 days later, integrin expression was confirmed by RT-PCR, radiographs were collected and behavioral measurements of spontaneous and evoked pain performed. All animals independent of integrin status had indistinguishable tumor burden and developed bone loss 21 days after surgery. A comparison of animals containing the wild type or mutated integrin revealed that tumor cells expressing the mutated integrin resulted in a dramatic decrease in bone loss, unicortical or bicortical fractures and a decrease in the ability of tumor cells to reach the epiphyseal plate of the bone. Further, tumor cells within the bone expressing the integrin mutation prevented cancer induced spontaneous flinching, tactile allodynia, and movement evoked pain. Preventing A6 integrin cleavage on the prostate tumor cell surface decreased the migration of tumor cells within the bone and the onset and degree of bone pain and fractures. These results suggest that strategies for blocking the cleavage of the adhesion receptors on the tumor cell surface can significantly prevent cancer induced bone pain and slow disease progression within the bone. Since integrin cleavage is mediated by Urokinase-type Plasminogen Activator (uPA), further work is warranted to test the efficacy of uPA inhibitors for prevention or delay of cancer induced bone pain

    New approaches to high-resolution mapping of marine vertical structures

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    Vertical walls in marine environments can harbour high biodiversity and provide natural protection from bottom-trawling activities. However, traditional mapping techniques are usually restricted to down-looking approaches which cannot adequately replicate their 3D structure. We combined sideways-looking multibeam echosounder (MBES) data from an AUV, forward-looking MBES data from ROVs and ROV-acquired videos to examine walls from Rockall Bank and Whittard Canyon, Northeast Atlantic. High-resolution 3D point clouds were extracted from each sonar dataset and structure from motion photogrammetry (SfM) was applied to recreate 3D representations of video transects along the walls. With these reconstructions, it was possible to interact with extensive sections of video footage and precisely position individuals. Terrain variables were derived on scales comparable to those experienced by megabenthic individuals. These were used to show differences in environmental conditions between observed and background locations as well as explain spatial patterns in ecological characteristics. In addition, since the SfM 3D reconstructions retained colours, they were employed to separate and quantify live coral colonies versus dead framework. The combination of these new technologies allows us, for the first time, to map the physical 3D structure of previously inaccessible habitats and demonstrates the complexity and importance of vertical structures

    Clinical and Organizational Factors Related to the Reduction of Mechanical Restraint Application in an Acute Ward: An 8-Year Retrospective Analysis

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    Background: The purpose of this study was to describe the frequency of mechanical restraint use in an acute psychiatric ward and to analyze which variables may have significantly influenced the use of this procedure. Methods: This retrospective study was conducted in the Servizio Psichiatrico di Diagnosi e Cura (SPDC) of Modena Centro. The following variables of our sample, represented by all restrained patients admitted from 1-1-2005 to 31-12-2012, were analyzed: age, gender, nationality, psychiatric diagnoses, organic comorbidity, state and duration of admission, motivation and duration of restraints, nursing shift and hospitalization day of restraint, number of patients admitted at the time of restraint and institutional changes during the observation period. The above variables were statistically compared with those of all other non-restrained patients admitted to our ward in the same period. Results: Mechanical restraints were primarily used as a safety procedure to manage aggressive behavior of male patients, during the first days of hospitalization and night shifts. Neurocognitive disorders, organic comorbidity, compulsory state and long duration of admission were statistically significantly related to the increase of restraint use (p<.001, multivariate logistic regression). Institutional changes, especially more restricted guidelines concerning restraint application, were statistically significantly related to restraint use reduction (p<.001, chi2 test, multivariate logistic regression). Conclusion: The data obtained highlight that mechanical restraint use was influenced not only by clinical factors, but mainly by staff and policy factors, which have permitted a gradual but significant reduction in the use of this procedure through a multidimensional approach

    Optimal Management of Marine Inspection with Autonomous Underwater Vehicles

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    t New technologies and system communications are being applied in the industry, improving the efficiency and effectiveness. This paper is focused on novel technologies, software and materials that allow to explore deep ocean floor. Autonomous underwater vehicles require planning navigation models and algorithms. Sensors equipped in underwater vehicles allow to inspect and analyse inaccessible areas. Monitor and control measurement process is required to ensure suitable underwater operations. This paper presents a model using the main inspection process variables. The model calculates the field of view of the autonomous underwater vehicle to be determined according to the type of sensor, the orientation and the distance from the floor. This study aims at stabilising the fundaments to develop an autonomous route for the autonomous underwater vehicles and optimize its operation performance
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