Providing scientific visualisation for spatial data analysis: criteria and an assessment of SAGE

A consistent theme in recent work on developing exploratory spatial data analysis (ESDA) has been the importance attached to visualization techniques, particularly following the pioneering development of packages such as REGARD by Haslett et al (1990). The focus on visual techniques is often justified in two ways: (a) the power of modern graphical interfaces means that graphics is no longer a way of simply presenting results in the form of maps or graphs, but a tool for the extraction of information from data; (b)graphical, exploratory methods are felt to be more intuitive for non-specialists to use than methods of numerical spatial statistics enabling wider participation in the process of getting data insights. Despite the importance attached to visualisation techniques, very little work has been done to assess the effectiveness of techniques, either in the wider scientific visualisation community, or among those working with spatial data. This paper will describe a theoretical framework for developing visualisation tools for ESDA that incorporates a data model of what the analyst is looking for based on the concepts of "rough" and "smooth" elements of a data set and a theoretical scheme for assessing visual tools. The paper will include examples of appropriate tools and a commentary on the effectiveness of some existing packages

Chemical Release Observation Program Description and Flight Results

The Chemical Release Observation (CRO) program developed three small satellites that were deployed from the Shuttle on flight STS-39. These were small experimental satellites built with a minimum of paperwork. While meeting all the necessary NASAISTS requirements. Each satellite contained a chemical (either hydrazine or an oxidizer) which was released on ground command. The satellites were approximately 18 diameter and 31 high. and weighed 160 to 195 pounds when loaded. The satellites carried 60 pounds of MMH (MonoMethyl Hydrazine), 52 pounds of UDMH (Unsymmetrical DiMethyl Hydrazine) and 11 pounds of N10 4 (Nitrogen Tetroxide). The satellites were designed and built by DS1, under a contract with Los Alamos National Laboratory, with funding provided by SDIO. Environmental and operational testing was performed at Goddard Space Flight Center, Los Alamos National Laboratory and Vandenberg AFB. Through a long and arduous process, they were fully qualified for use on the Shuttle. The satellites were launched on board Space Shuttle DISCOVERY on April 28, 1991 as a part of the IBSS program. The satellites were deployed from the Shuttle, one at a time, and all three were successfully commanded from Vandenberg AFB to release its chemical at the scheduled time

Gradient instability for ω < - 1

We show that in single scalar field models of the dark energy with equations of state satisfying w ≡ p/ρ < − 1, the effective Lagrangian for fluctuations about the homogeneous background has a wrong sign spatial kinetic term. In most cases, spatial gradients are ruled out by microwave background observations. The sign of w + 1 is not connected to the sign of the time derivative kinetic term in the effective Lagrangian

Response to comment on "solid recovered fuel: Materials flow analysis and fuel property development during the mechanical processing of biodried waste"

Laner and Cencic1 comment on Velis et al. (2013)2 clarifying certain points on the use of the material flow analysis (MFA) software STAN3. We welcome the correspondence and the opportunity this exchange provides to discuss optimal approaches to using STAN. In keeping with Velis et al.2 these physically impossible, and otherwise insignificant, negative flows have enabled improvements to STAN. Here, we elaborate on the practicalities of using STAN in our research and on the correctness and validation of our results, notwithstanding the inclusion of negative flows. We explain the contribution of our approach to solid waste management and resource recovery

Prazosin Reduces Alcohol Intake in an Animal Model of Alcohol Relapse

BACKGROUND: Many alcoholics and heavy drinkers undergo repeated cycles of alcohol abstinence followed by relapse to alcohol drinking; a pattern that contributes to escalated alcohol intake over time. In rodents, alcohol drinking that is interspersed with periods of alcohol deprivation (imposed abstinence) increases alcohol intake during reaccess to alcohol. This is termed the "alcohol deprivation effect" or "ADE" and is a model of alcohol relapse in humans. We have previously reported that prazosin reduces alcohol drinking during both brief and prolonged treatment in rats selectively bred for alcohol preference ("P" rats). This study explores whether prazosin prevents alcohol "relapse" in P rats, as reflected by a reduced or abolished ADE. METHODS: Adult male P rats were given 24-hour access to food and water and scheduled access to alcohol (15 and 30% v/v solutions presented concurrently) for 2 h/d. After 5 weeks, rats underwent imposed alcohol deprivation for 2 weeks, followed by alcohol reaccess for 2 weeks, and this pattern was repeated for a total of 3 cycles. Rats were injected with prazosin (0, 0.5, 1.0, or 2.0 mg/kg body weight, intraperitoneally) once a day for the first 5 days of each alcohol reaccess cycle. RESULTS: Alcohol intake increased on the first day of each alcohol reaccess cycle, demonstrating the formation of an ADE. The ADE was short-lived, lasting only 1 day, during each of the 3 cycles. Prazosin, in all doses tested, prevented the expression of an ADE in all 3 alcohol reaccess cycles. CONCLUSIONS: Prazosin decreases alcohol intake in P rats even in a situation that would be expected to increase alcohol drinking, namely following periods of alcohol deprivation. This suggests that prazosin may be effective in reducing alcohol relapse that often occurs during attempts to achieve permanent alcohol abstinence in treatment-seeking alcoholics and heavy drinkers

Optimized Multi-Frequency Spectra for Applications in Radiative Feedback and Cosmological Reionization

The recent implementation of radiative transfer algorithms in numerous hydrodynamics codes has led to a dramatic improvement in studies of feedback in various astrophysical environments. However, because of methodological limitations and computational expense, the spectra of radiation sources are generally sampled at only a few evenly-spaced discrete emission frequencies. Using one-dimensional radiative transfer calculations, we investigate the discrepancies in gas properties surrounding model stars and accreting black holes that arise solely due to spectral discretization. We find that even in the idealized case of a static and uniform density field, commonly used discretization schemes induce errors in the neutral fraction and temperature by factors of two to three on average, and by over an order of magnitude in certain column density regimes. The consequences are most severe for radiative feedback operating on large scales, dense clumps of gas, and media consisting of multiple chemical species. We have developed a method for optimally constructing discrete spectra, and show that for two test cases of interest, carefully chosen four-bin spectra can eliminate errors associated with frequency resolution to high precision. Applying these findings to a fully three-dimensional radiation-hydrodynamic simulation of the early universe, we find that the HII region around a primordial star is substantially altered in both size and morphology, corroborating the one-dimensional prediction that discrete spectral energy distributions can lead to sizable inaccuracies in the physical properties of a medium, and as a result, the subsequent evolution and observable signatures of objects embedded within it.Comment: 15 pages, 13 figures, 2 tables, accepted for publication in the Astrophysical Journa

Concentrations of Polychlorinated Biphenyls (PCB’s), Chlorinated Pesticides, and Heavy Metals and Other Elements in Tissues of Belugas, Delphinapterus leucas, from Cook Inlet

Tissues from Cook Inlet beluga whales, Delphinapterus leucas, that were collected as part of the Alaska Marine Mammal Tissue Archival Project were analyzed for polychlorinated biphenyls (PCB’s), chlorinated pesticides, and heavy metals and other elements. Concentrations of total PCB’s (ΣPCB’s), total DDT (ΣDDT), chlordane compounds, hexachlorobenzene (HCB), dieldrin, mirex, toxaphene, and hexachlorocyclohexane (HCH) measured in Cook Inlet beluga blubber were compared with those reported for belugas from two Arctic Alaska locations (Point Hope and Point Lay), Greenland, Arctic Canada, and the highly contaminated stock from the St. Lawrence estuary in eastern Canada. The Arctic and Cook Inlet belugas had much lower concentrations (ΣPCB’s and ΣDDT were an order of magnitude lower) than those found in animals from the St. Lawrence estuary. The Cook Inlet belugas had the lowest concentrations of all (ΣPCB’s aver-aged 1.49 ± 0.70 and 0.79 ± 0.56 mg/kg wet mass, and ΣDDT averaged 1.35 ± 0.73 and 0.59 ± 0.45 mg/kg in males and females, respectively). Concentrations in the blubber of the Cook Inlet males were significantly lower than those found in the males of the Arctic Alaska belugas (ΣPCB’s and ΣDDT were about half). The lower levels in the Cook Inlet animals might be due to differences in contaminant sources, food web differences, or different age distributions among the animals sampled. Cook Inlet males had higher mean and median concentrations than did females, a result attributable to the transfer of these compounds from mother to calf during pregnancy and during lactation. Liver concentrations of cadmium and mercury were lower in the Cook Inlet belugas (most cadmium values were <1 mg/kg and mercury values were 0.704–11.42 mg/kg wet mass), but copper levels were significantly higher in the Cook Inlet animals (3.97–123.8 mg/kg wet mass) than in Arctic Alaska animals and similar to those reported for belugas from Hudson Bay. Although total mercury levels were the lowest in the Cook Inlet population, methylmercury concentrations were similar among all three groups of the Alaska animals examined (0.34–2.11 mg/kg wet mass). As has been reported for the Point Hope and Point Lay belugas, hepatic concentrations of silver were r

Functional analysis of a human A1 adenosine receptor/green fluorescent protein/Gi1α fusion protein following stable expression in CHO cells

AbstractFusion proteins between the human A1 adenosine receptor and the pertussis toxin resistant (Cys351Gly) mutant of the G-protein α subunit Gi1α (A1/Gi), and between the human A1 adenosine receptor, the Aequorea victoria green fluorescent protein (GFP) and Cys351Gly Gi1α (A1/GFP/Gi), were expressed in CHO cells. The agonist NECA caused a stimulation of [35S]GTPγS binding at both fusion proteins with similar concentration dependence as at the native receptor. However in the presence of pertussis toxin NECA stimulation of [35S]GTPγS binding was only seen at the A1/GFP/Gi fusion protein. The regulation of the adenylyl cyclase and MAP kinase effector systems by both fusion proteins was attenuated following pertussis toxin treatment. These studies demonstrate for the first time the characterisation of a fusion protein between a G-protein coupled receptor, GFP and a G-protein α subunit

TDT-HET: A new transmission disequilibrium test that incorporates locus heterogeneity into the analysis of family-based association data

<p>Abstract</p> <p>Background</p> <p>Locus heterogeneity is one of the most documented phenomena in genetics. To date, relatively little work had been done on the development of methods to address locus heterogeneity in genetic association analysis. Motivated by Zhou and Pan's work, we present a mixture model of linked and unlinked trios and develop a statistical method to estimate the probability that a heterozygous parent transmits the disease allele at a di-allelic locus, and the probability that any trio is in the linked group. The purpose here is the development of a test that extends the classic transmission disequilibrium test (<it>TDT</it>) to one that accounts for locus heterogeneity.</p> <p>Results</p> <p>Our simulations suggest that, for sufficiently large sample size (1000 trios) our method has good power to detect association even the proportion of unlinked trios is high (75%). While the median difference (<it>TDT-HET </it>empirical power - <it>TDT </it>empirical power) is approximately 0 for all MOI, there are parameter settings for which the power difference can be substantial. Our multi-locus simulations suggest that our method has good power to detect association as long as the markers are reasonably well-correlated and the genotype relative risk are larger. Results of both single-locus and multi-locus simulations suggest our method maintains the correct type I error rate.</p> <p>Finally, the <it>TDT-HET </it>statistic shows highly significant p-values for most of the idiopathic scoliosis candidate loci, and for some loci, the estimated proportion of unlinked trios approaches or exceeds 50%, suggesting the presence of locus heterogeneity.</p> <p>Conclusions</p> <p>We have developed an extension of the <it>TDT </it>statistic (<it>TDT-HET</it>) that allows for locus heterogeneity among coded trios. Benefits of our method include: estimates of parameters in the presence of heterogeneity, and reasonable power even when the proportion of linked trios is small. Also, we have extended multi-locus methods to <it>TDT-HET </it>and have demonstrated that the empirical power may be high to detect linkage. Last, given that we obtain PPBs, we conjecture that the <it>TDT-HET </it>may be a useful method for correctly identifying linked trios. We anticipate that researchers will find this property increasingly useful as they apply next-generation sequencing data in family based studies.</p