Improving Catalogue Matching By Supplementing Astrometry with Additional Photometric Information

This is the author accepted manuscript. The final version is available from Oxford University Press via the DOI in this record.The matching of sources between photometric catalogues can lead to cases where objects of differing brightness are incorrectly assumed to be detections of the same source. The rejection of unphysical matches can be achieved through the inclusion of information about the sources’ magnitudes. The method described here uses the additional photometric information from both catalogues in the process of accepting or rejecting counterparts, providing approximately a factor 10 improvement in Bayes’ factor with its inclusion. When folding in the photometric information we avoid using prior astrophysical knowledge. Additionally, the method allows for the possibility of no counterparts to sources as well as the possibility that sources overlap multiple potential counterparts. We formally describe the probability of two sources being the same astrometric object, allowing systematic effects of astrometric perturbation (by, e.g., contaminant objects) to be accounted for. We apply the method to two cases. First, we test IPHAS-Gaia matches to compare the resulting matches in two catalogues of similar wavelength coverage but differing dynamical ranges. Second, we apply the method to matches between IPHAS and 2MASS and show that the method holds when considering two catalogues with approximately equal astrometric precision. We discuss the importance of including the magnitude information in each case. Additionally, we discuss extending the method to multiple catalogue matches through an iterative matching process. The method allows for the selection of high-quality matches by providing an overall probability for each pairing, giving the flexibility to choose stars known to be good matches.The authors thank the referee for their thorough report and useful comments, which helped us to improve this paper. TJW acknowledges support from an STFC Studentship. This work has made use of the SciPy (Jones et al. 2001), NumPy (van der Walt et al. 2011), Matplotlib (Hunter 2007), and F2PY (Peterson 2009) Python modules. This paper makes use of data obtained as part of the INT Photometric H_ Survey of the Northern Galactic Plane (IPHAS, www.iphas.org) carried out at the Isaac Newton Telescope (INT). The INT is operated on the island of La Palma by the Isaac Newton Group in the Spanish Obser- vatorio del Roque de los Muchachos of the Instituto de Astro_sica de Canarias. All IPHAS data are processed by the Cambridge Astronomical Survey Unit, at the Institute of Astronomy in Cambridge. The bandmerged DR2 cata- logue was assembled at the Centre for Astrophysics Re- search, University of Hertfordshire, supported by STFC grant ST/J001333/1. This publication makes use of data products from the Two Micron All Sky Survey, which is a joint project of the University of Massachusetts and the Infrared Processing and Analysis Center/California Institute of Technology, funded by the National Aeronautics and Space Administration and the National Science Foundation. This work has made use of data from the European Space Agency (ESA) mission Gaia (http://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC, http://www.cosmos.esa.int/web/gaia/dpac/consortium). Funding for the DPAC has been provided by national insti- tutions, in particular the institutions participating in the Gaia Multilateral Agreement

Inferring muscle functional roles of the ostrich pelvic limb during walking and running using computer optimization

Owing to their cursorial background, ostriches (Struthio camelus) walk and run with high metabolic economy, can reach very fast running speeds and quickly execute cutting manoeuvres. These capabilities are believed to be a result of their ability to coordinate muscles to take advantage of specialized passive limb structures. This study aimed to infer the functional roles of ostrich pelvic limb muscles during gait. Existing gait data were combined with a newly developed musculoskeletal model to generate simulations of ostrich walking and running that predict muscle excitations, force and mechanical work. Consistent with previous avian electromyography studies, predicted excitation patterns showed that individual muscles tended to be excited primarily during only stance or swing. Work and force estimates show that ostrich gaits are partially hip-driven with the bi-articular hip–knee muscles driving stance mechanics. Conversely, the knee extensors acted as brakes, absorbing energy. The digital extensors generated large amounts of both negative and positive mechanical work, with increased magnitudes during running, providing further evidence that ostriches make extensive use of tendinous elastic energy storage to improve economy. The simulations also highlight the need to carefully consider non-muscular soft tissues that may play a role in ostrich gait

Metabolism, personality and pace of life in the Trinidadian guppy, Poecilia reticulata

This is the author accepted manuscript. The final version is available from Brill Academic Publishers via the DOI in this record.While among-individual variation in behaviour, or personality, is common across taxa, its mechanistic underpinnings are poorly understood. The Pace of Life syndrome (POLS) provides one possible explanation for maintenance of personality differences. POLS predicts that metabolic differences will covary with behavioural variation, with high metabolism associated with risk prone behaviour and ‘faster’ life histories (e.g., high growth, early maturation). We used a repeated measures approach, assaying metabolic traits (rate and scope), behaviour and growth to test these predictions in the Trinidadian guppy, Poecilia reticulata. We found that while individuals varied significantly in their behaviour and growth rate, more risk prone individuals did not grow significantly faster. Furthermore, after accounting for body size there was no support for among-individual variation in metabolic traits. Thus, while personality differences are clearly present in this population, they do not covary with metabolism and the POLS framework is not supported

Understanding the relative importance of vertical and horizontal flow in ice-wedge polygons

Ice-wedge polygons are common Arctic landforms. The future of these landforms in a warming climate depends on the bidirectional feedback between the rate of ice-wedge degradation and changes in hydrological characteristics. This work aims to better understand the relative roles of vertical and horizontal water fluxes in the subsurface of polygonal landscapes, providing new insights and data to test and calibrate hydrological models. Field-scale investigations were conducted at an intensively instrumented location on the Barrow Environmental Observatory (BEO) near Utqiagvik, AK, USA. Using a conservative tracer, we examined controls of microtopography and the frost table on subsurface flow and transport within a low-centered and a high-centered polygon. Bromide tracer was applied at both polygons in July 2015 and transport was monitored through two thaw seasons. Sampler arrays placed in polygon centers, rims, and troughs were used to monitor tracer concentrations. In both polygons, the tracer first infiltrated vertically until encountering the frost table and was then transported horizontally. Horizontal flow occurred in more locations and at higher velocities in the low-centered polygon than in the high-centered polygon. Preferential flow, influenced by frost table topography, was significant between polygon centers and troughs. Estimates of horizontal hydraulic conductivity were within the range of previous estimates of vertical conductivity, highlighting the importance of horizontal flow in these systems. This work forms a basis for understanding complexity of flow in polygonal landscapes

Photographs of George Thomas Wilson

Photographs of George Wilson (1907–1991). George Wilson joined the University of Tasmania in 1945 as a lecturer in history, making a very big contribution to the study of Asian history . For the 14 years before his retirement in 1974 he was Warden of Hytten Hall, the University's first residential college where he became a genuinely beloved fatherly figure to the student body. He continued as Reader in the History Department. During the 1950s he was a student counsellor and a keen rugby union player and coach, helping re-establish the game of rugby union in Tasmania after the Second World War

Wireless monitoring of liver hemodynamics in vivo

Liver transplants have their highest technical failure rate in the first two weeks following surgery. Currently, there are limited devices for continuous, real-time monitoring of the graft. In this work, a three wavelengths system is presented that combines near-infrared spectroscopy and photoplethysmography with a processing method that can uniquely measure and separate the venous and arterial oxygen contributions. This strategy allows for the quantification of tissue oxygen consumption used to study hepatic metabolic activity and to relate it to tissue stress. The sensor is battery operated and communicates wirelessly with a data acquisition computer which provides the possibility of implantation provided sufficient miniaturization. In two in vivo porcine studies, the sensor tracked perfusion changes in hepatic tissue during vascular occlusions with a root mean square error (RMSE) of 0.135 mL/min/g of tissue. We show the possibility of using the pulsatile wave to measure the arterial oxygen saturation similar to pulse oximetry. The signal is also used to extract the venous oxygen saturation from the direct current (DC) levels. Arterial and venous oxygen saturation changes were measured with an RMSE of 2.19% and 1.39% respectively when no vascular occlusions were induced. This error increased to 2.82% and 3.83% when vascular occlusions were induced during hypoxia. These errors are similar to the resolution of a commercial oximetry catheter used as a reference. This work is the first realization of a wireless optical sensor for continuous monitoring of hepatic hemodynamics. © 2014 Akl et al

blandaltman: A command to create variants of Bland–Altman plots

Bland–Altman plots can be useful in paired data settings such as measurement-method comparison studies. A Bland–Altman plot has differences, percentage differences, or ratios on the y axis and a mean of the data pairs on the x axis, with 95% limits of agreement indicating the central 95% range of differences, percentage differences, or ratios. This range can vary with the mean. We introduce the community-contributed blandaltman command, which uniquely in Stata can 1) create Bland–Altman plots featuring ratios in addition to differences and percentage differences, 2) allow the limits of agreement for ratios and percentage differences to vary as a function of the mean, and 3) add confidence intervals, prediction intervals, and tolerance intervals to the plots

Appearance and Disappearance of Quantum Correlations in Measurement-Based Feedback Control of a Mechanical Oscillator

Quantum correlations between imprecision and backaction are a hallmark of continuous linear measurements. Here, we study how measurement-based feedback can be used to improve the visibility of quantum correlations due to the interaction of a laser field with a nanomechanical oscillator. Backaction imparted by the meter laser, due to radiation-pressure quantum fluctuations, gives rise to correlations between its phase and amplitude quadratures. These quantum correlations are observed in the experiment both as squeezing of the meter field fluctuations below the vacuum level in a homodyne measurement and as sideband asymmetry in a heterodyne measurement, demonstrating the common origin of both phenomena. We show that quantum feedback, i.e., feedback that suppresses measurement backaction, can be used to increase the visibility of the sideband asymmetry ratio. In contrast, by operating the feedback loop in the regime of noise squashing, where the in-loop photocurrent variance is reduced below the vacuum level, the visibility of the sideband asymmetry is reduced. This is due to backaction arising from vacuum noise in the homodyne detector. These experiments demonstrate the possibility, as well as the fundamental limits, of measurement-based feedback as a tool to manipulate quantum correlations.Research is funded by an ERC Advanced Grant (QuREM), a Marie Curie Initial Training Network Cavity Quantum Optomechanics, the Swiss National Science Foundation, and through support from the NCCR of Quantum Engineering (QSIT). D. J. W. acknowledges support from the European Commission through a Marie Curie Fellowship (IIF Project No. 331985)

The influence of perfusion solution on renal graft viability assessment

BACKGROUND: Kidneys from donors after cardiac or circulatory death are exposed to extended periods of both warm ischemia and intra-arterial cooling before organ recovery. Marshall’s hypertonic citrate (HOC) and Bretschneider’s histidine-tryptophan-ketoglutarate (HTK) preservation solutions are cheap, low viscosity preservation solutions used clinically for organ flushing. The aim of the present study was to evaluate the effects of these two solutions both on parameters used in clinical practice to assess organ viability prior to transplantation and histological evidence of ischemic injury after reperfusion. METHODS: Rodent kidneys were exposed to post-mortem warm ischemia, extended intra-arterial cooling (IAC) (up to 2 h) with preservation solution and reperfusion with either Krebs-Hensleit or whole blood in a transplant model. Control kidneys were either reperfused directly after retrieval or stored in 0.9% saline. Biochemical, immunological and histological parameters were assessed using glutathione-S-transferase (GST) enzymatic assays, polymerase chain reaction and mitochondrial electron microscopy respectively. Vascular function was assessed by supplementing the Krebs-Hensleit perfusion solution with phenylephrine to stimulate smooth muscle contraction followed by acetylcholine to trigger endothelial dependent relaxation. RESULTS: When compared with kidneys reperfused directly post mortem, 2 h of IAC significantly reduced smooth muscle contractile function, endothelial function and upregulated vascular cellular adhesion molecule type 1 (VCAM-1) independent of the preservation solution. However, GST release, vascular resistance, weight gain and histological mitochondrial injury were dependent on the preservation solution used. CONCLUSIONS: We conclude that initial machine perfusion viability tests, including ischemic vascular resistance and GST, are dependent on the perfusion solution used during in situ cooling. HTK-perfused kidneys will be heavier, have higher GST readings and yet reduced mitochondrial ischemic injury when compared with HOC-perfused kidneys. Clinicians should be aware of this when deciding which kidneys to transplant or discard