Late Quaternary Marine and Terrestrial Environments, Northwestern Baffin Island, Northwest Territories

Paleoenvironmental data were analyzed from terrestrial, lake, and marine sediments collected near Arctic Bay, Baffin Island, N.W.T. Eighteen new radiocarbon dates provide chronological control, superseding earlier results. Spuriously old dates were obtained from both sandy peats and low-organic lake sediments. The most reliable dates were from marine shells and foraminifera. They indicate that déglaciation was underway by 9000 BP rather than 16,000 BP. Over the period of the record, the local environment was characterized by a high arctic pollen assemblage dominated by grass, sedge, and willow; a middle Holocene warm period is indicated by increased willow, herb, and moss values. Sea-ice conditions were severe enough to inhibit the growth of diatoms until ca. 6300 BP and ice proximal and deglacial conditions prevailed in the fiords until ca. 6000 BP. Diatom productivity increased between 3000 BP and 2500 BP, suggesting warmer surface waters and less sea ice. After 2000 BP diatom accumulation decreased sharply, due to a cooling of climate. The foraminifera indicate a major change in bottom water conditions ca. 4000 BP as the benthic species shift from a calcareous to an arenaceous assemblage.On a procédé à l'analyse des données paléoenvironnementales tirées de sédiments terrestres, marins et lacustres, près de Arctic Bay. Dix-huit nouvelles dates au radiocarbone ont permis d'établir une nouvelle chronologie. Les dates les plus anciennes, et les moins fiables, ont été obtenus dans des tourbes sableuses et des sédiments lacustres à basse teneur organique. Les dates les plus sûres proviennent de coquillages marins et des foraminifères. Elles indiquent que la déglaciation était en cours dès 9000 BP plutôt qu'à 16 000 BP. Pendant la période relevée, l'environnement dans le haut Arctique était caractérisé au niveau local par un assemblage pollinique dominé par l'herbe, le carex et le saule; à l'Holocène moyen, les valeurs croissantes du saule, de l'herbe et de la mousse reflètent une période chaude. La densité de la glace marine était assez forte pour empêcher la croissance des diatomées jusqu'à 6300 BP; la déglaciation s'est poursuivie jusque vers 6000 BP dans les fjords. La reproduction des diatomées a augmenté entre 3000 et 2500 BP en raison de températures de surface plus chaudes et une diminution des glaces marines. Après 2000 BP, l'accumulation des diatomées a décru abruptement en raison d'un refroidissement climatique. Les foraminifères démontrent un changement important survenu dans l'état des eaux profondes vers 4000 BP puisqu'il y a eu remplacement des espèces benthoniques à test calcaire par des espèces à test agglutiné.Man hat Palâoumweltdaten von Erd-, See- und Meeres-Sedimenten analysiert, die man in der Nâhe der Arctic Bay, lnsel Baffin, Nordwest-Territorien gesammelt hat. Achtzehn neue Radiocarbondaten liefern eine chronologische Kontrolle und ersetzen so fruhere Resultate. Faische alte Daten hat man sowohi aus sandigem Ton1 wie auch aus Seesedimenten mit niedrigem organischem Gehalt gewonnen. Die zuver-làssigsten Daten stammen von Meeres-muscheln und Foraminiferen. Sie zeigen, dass die Enteisung urn 9000 v.u.Z. und nicht um 16,000 v.u.Z. im Gange war. Liber den Zeitraum des Belegs charakterisierte sich die lokale Umwelt durch eine Pollen-Zusammensetzung der hohen Arktis, die von Gras, Schilfgras und Weide beherrscht war; auf eine warme Période wâhrend des mittleren Holozàns weisen zunehmende Weiden-, Gras- und Mooswerte. Die Meereseisbedingungen waren streng genug, um das Wachstum von Diatomeen bis etwa 6300 v.u.Z. zu verhindern und Proximaleis und Enteisungsbedingungen herrschten in den Fjords bis etwa 6000 v.u.Z. vor. Die Reproduktion von Diatomeen nahm zwischen 3000 v.u.Z. und 2500 v.u.Z. zu, was auf wàrmeres Oberflàchenwasser und weniger Meereseis schliessen làsst. Nach 2000 v.u.Z. nahm die Diatomeen-Akkumulation wegen einer Klimaabkuhlung plôtzlich ab. Die Foraminiferen zeigen einen betràchtlichen Wechsel der Bedingungen im tiefen Wasser um etwa 4000 v.u.Z., wenn die benthonischen Spezies von einer kalkartigen zu einer sandigen Zusammensetzung ubergehen

The Eastern Canadian Arctic at ca. 6 ka BP: A Time of Transition

The middle Holocene was a time of definite environmental transition in the Eastern Canadian Arctic. Based on several proxy indicators (pollen, diatoms, foraminifera, molluscs and nearshore sedimentation rates), it appears that a thermal maximum occurred around middle Holocene (6-4 ka), several thousand years after the insolation maximum — a lag caused by the thermal inertia of the earlier massive ice sheet. Terrestrial records indicate that a warming began around 6 ka, both in the subarctic (Labrador - Ungava) and on Baffin Island. Marine records, on the other hand, suggested major water structure changes around 6 ka both in the Northeastern Canadian Arctic and also along the East Greenland coast with evidence of a marine surface water temperature maximum at 8 ka. We hypothesize that the marine circulation changes, both along the Baffin Island and along the East Greenland coasts, were primarily driven by glacio-isostatic uplift of the Arctic Channels. With the cessation of water flow of Atlantic (warmer) origin, and decrease in water volume from the deeper parts of the Arctic Ocean through the Arctic Channels, the export through the Fram and Denmark straits increased and the water column changed. Changes in the concentration and duration of sea ice along the eastern Canadian coast would have had important repercussions on the biota of the coastal marine and terrestrial ecosystems.L'Holocène moyen a été une période de transition bien déterminée dans l'est de l'Arctique canadien. Selon de nombreux indicateurs (pollen, diatomées, foraminifères, mollusques et taux de sédimentation côtiers), il semble qu'un maximum thermique ait été atteint vers le milieu de l'Holocène (6-4 ka), plusieurs milliers d'années après le maximum d'insolation — un retard dû à l'inertie thermique causée par la présence de l'immense inlandsis. Les données terrestres démontrent qu'un réchauffement s'est amorcé vers 6 ka, à la fois dans le subarctique (Labrador, Ungava) et dans l'île de Baffin. Les données marines, d'autre part, indiquent qu'il y a eu des changements de structure de l'eau vers 6 ka à la fois dans le nord-est de l'Arctique canadien et le long de la côte du Groenland avec des indices de températures maximales marines de surface à 8 ka. Nous posons l'hypothèse selon laquelle les changements de circulation marine, à la fois le long de l'île de Baffin et le long de la côte est du Groenland ont été provoqués par le relèvement isostatique des chenaux arctiques. Avec l'arrêt de l'écoulement (plus chaud) en provenance de l'Atlantique et la diminution du cubage d'eau provenant des grandes profondeurs de l'océan Arctique dans les chenaux arctiques, l'évacuation par les détroits de Fram et du Danemark s'est accrue et la colonne d'eau s'est modifiée. Les changements de concentration et de durée de la glace marine le long de la côte est du Canada auraient eu d'importantes répercussions sur les écosystèmes marins côtiers et terrestres.Das mittlere Holozân war eine eindeutige Umwelt-Ùbergangszeit in der ostkanadischen Arktis. Gestùtzt auf zahlreiche Indikatoren (Pollen, Kieselalgen, Foraminiferen, Mollusken und die Sedimentationsrate am Ufer) scheint es, dap ein thermales Maximum um die Mitte des Holozàns erreicht wurde (6-4 ka), mehrere tausend Jahre nach dem Sonneneinstrahlungsmaximum - eine Verzôgerung, welche durch die thermale Trâgheit der frùheren massiven Eisdecke bewirkt wurde. Belege zu Land zeigen, daB eine Erwârmung um 6 ka begann, sowohl in der Subarktis (Labrador-Ungava) wie auch auf der Baffin-lnsel. Meeresbelege andererseits weisen auf bedeutende Wasserstruktur-Ànderungen um 6 ka, sowohl in der nordôstlichen kanadischen Arktis wie auch entlang der Kùste von Ost-Grônland, mit Anhaltspunkten fur maximale Wassertemperaturen an der Meeresober-flâche um 8 ka. Wir stellen die Hypothèse auf, daB die Wechsel der marinen Zirkulation, sowohl entlang der Baffin-lnsel wie auch der Kùsten von Ost-Grônland, in erster Linie durch die glazial-isostatische Anhebung der arktischen Kanâle hervorgerufen wurden. Mit der Beendigung des (wàrmeren) Wasserflusses vom Atlantik und der Abnahme des Wasservolumes von den tieferen Teilen des arktischen Ozeans durch die arktischen Kanâle nahm die Ausfuhr durch die Meeregen von Fram und Danemark zu, und die Wassersàule ânderte sich. Die Wechsel in der Konzentration und Dauer des Meereises entlang der ostkanadischen Kùste sollen bedeutende Auswirkungen auf Ôkosysteme an der Meereskùste und zu Land gehabt haben

A polyphenol-enriched diet and Ascaris suum infection modulate mucosal immune responses and gut microbiota composition in pigs

<div><p>Polyphenols are a class of bioactive plant secondary metabolites that are thought to have beneficial effects on gut health, such as modulation of mucosal immune and inflammatory responses and regulation of parasite burdens. Here, we examined the interactions between a polyphenol-rich diet supplement and infection with the enteric nematode <i>Ascaris suum</i> in pigs. Pigs were fed either a basal diet or the same diet supplemented with grape pomace (GP), an industrial by-product rich in polyphenols such as oligomeric proanthocyanidins. Half of the animals in each group were then inoculated with <i>A</i>. <i>suum</i> for 14 days to assess parasite establishment, acquisition of local and systemic immune responses and effects on the gut microbiome. Despite <i>in vitro</i> anthelmintic activity of GP-extracts, numbers of parasite larvae in the intestine were not altered by GP-supplementation. However, the bioactive diet significantly increased numbers of eosinophils induced by <i>A</i>. <i>suum</i> infection in the duodenum, jejunum and ileum, and modulated gene expression in the jejunal mucosa of infected pigs. Both GP-supplementation and <i>A</i>. <i>suum</i> infection induced significant and apparently similar changes in the composition of the prokaryotic gut microbiota, and both also decreased concentrations of isobutyric and isovaleric acid (branched-chain short chain fatty acids) in the colon. Our results demonstrate that while a polyphenol-enriched diet in pigs may not directly influence <i>A</i>. <i>suum</i> establishment, it significantly modulates the subsequent host response to helminth infection. Our results suggest an influence of diet on immune function which may potentially be exploited to enhance immunity to helminths.</p></div

Environmental controls of billfish species in the Indian Ocean and implications for their management and conservation

Abstract Background and aim Billfish are epipelagic marine predators facing increasing pressures such as overfishing and rising global temperatures. Overfishing is a major concern, as they are caught by industrial longline fishers targeting tuna. Billfish are targeted by multiple fishing sectors, which provides food, socio-economic and cultural benefits. To support effective billfish management and conservation, it is essential to understand their spatial distribution and the environmental factors that may influence it. Location The focus of this study is the Indian Ocean (IO), where there are gaps in understanding the interactions between fisheries and billfish distribution. Three of six billfish species are at risk from overfishing. Therefore, determining their distribution is crucial to their management and conservation. Methods Using Ocean Biogeographic Information System (OBIS) occurrence data, Indian Ocean Tuna Commission (IOTC) catch data, and environmental covariates, we applied species distribution models to investigate the spatial extent of the realized niches of six billfish species in the IO. We also determined the role and relative importance of environmental drivers. Moreover, we evaluated the association between species’ spatial distribution and the fishing effort distribution. Results We found niche partitioning and overlap among the six species identified spatial distribution, with higher species richness in the northern region of the IO and off the East coast of Africa. Temperature, mixed layer depth and salinity were identified as the most important predictors of species distribution, with moderately warm and stable environments preferred by most billfish species. Areas with high species richness and high fishing effort overlap were primarily found in the Areas Beyond National Jurisdiction (ABNJ). In contrast, areas with high species diversity richness and low fishing effort were found mainly in the Exclusive Economic Zone (EEZ). Main conclusion Spatial overlap between fishing effort and billfish projected distribution suggests inadvertent fishing pressure on billfish populations as they are caught together with targeted tuna. Spatial distribution transcends maritime zones, reinforcing a need to formulate effective management policies for marine areas beyond national jurisdictions

A modified agar pad method for mycobacterial live-cell imaging

<p>Abstract</p> <p>Background</p> <p>Two general approaches to prokaryotic live-cell imaging have been employed to date, growing bacteria on thin agar pads or growing bacteria in micro-channels. The methods using agar pads 'sandwich' the cells between the agar pad on the bottom and a glass cover slip on top, before sealing the cover slip. The advantages of this technique are that it is simple and relatively inexpensive to set up. However, once the cover slip is sealed, the environmental conditions cannot be manipulated. Furthermore, desiccation of the agar pad, and the growth of cells in a sealed environment where the oxygen concentration will be in gradual decline, may not permit longer term studies such as those required for the slower growing mycobacteria.</p> <p>Findings</p> <p>We report here a modified agar pad method where the cells are sandwiched between a cover slip on the bottom and an agar pad on top of the cover slip (rather than the reverse) and the cells viewed from below using an inverted microscope. This critical modification overcomes some of the current limitations with agar pad methods and was used to produce time-lapse images and movies of cell growth for <it>Mycobacterium smegmatis </it>and <it>Mycobacterium bovis </it>BCG.</p> <p>Conclusions</p> <p>This method offers improvement on the current agar pad methods in that long term live cell imaging studies can be performed and modification of the media during the experiment is permitted.</p

Transposon libraries identify novel Mycobacterium bovis BCG genes involved in the dynamic interactions required for BCG to persist during in vivo passage in cattle

Background BCG is the most widely used vaccine of all time and remains the only licensed vaccine for use against tuberculosis in humans. BCG also protects other species such as cattle against tuberculosis, but due to its incompatibility with current tuberculin testing regimens remains unlicensed. BCG’s efficacy relates to its ability to persist in the host for weeks, months or even years after vaccination. It is unclear to what degree this ability to resist the host’s immune system is maintained by a dynamic interaction between the vaccine strain and its host as is the case for pathogenic mycobacteria. Results To investigate this question, we constructed transposon mutant libraries in both BCG Pasteur and BCG Danish strains and inoculated them into bovine lymph nodes. Cattle are well suited to such an assay, as they are naturally susceptible to tuberculosis and are one of the few animal species for which a BCG vaccination program has been proposed. After three weeks, the BCG were recovered and the input and output libraries compared to identify mutants with in vivo fitness defects. Less than 10% of the mutated genes were identified as affecting in vivo fitness, they included genes encoding known mycobacterial virulence functions such as mycobactin synthesis, sugar transport, reductive sulphate assimilation, PDIM synthesis and cholesterol metabolism. Many other attenuating genes had not previously been recognised as having a virulence phenotype. To test these genes, we generated and characterised three knockout mutants that were predicted by transposon mutagenesis to be attenuating in vivo: pyruvate carboxylase, a hypothetical protein (BCG_1063), and a putative cyclopropane-fatty-acyl-phospholipid synthase. The knockout strains survived as well as wild type during in vitro culture and in bovine macrophages, yet demonstrated marked attenuation during passage in bovine lymph nodes confirming that they were indeed involved in persistence of BCG in the host. Conclusion These data show that BCG is far from passive during its interaction with the host, rather it continues to employ its remaining virulence factors, to interact with the host’s innate immune system to allow it to persist, a property that is important for its protective efficacy.</p

Major flaws in conflict prevention policies towards Africa : the conceptual deficits of international actors’ approaches and how to overcome them

Current thinking on African conflicts suffers from misinterpretations oversimplification, lack of focus, lack of conceptual clarity, state-centrism and lack of vision). The paper analyses a variety of the dominant explanations of major international actors and donors, showing how these frequently do not distinguish with sufficient clarity between the ‘root causes’ of a conflict, its aggravating factors and its triggers. Specifically, a correct assessment of conflict prolonging (or sustaining) factors is of vital importance in Africa’s lingering confrontations. Broader approaches (e.g. “structural stability”) offer a better analytical framework than familiar one-dimensional explanations. Moreover, for explaining and dealing with violent conflicts a shift of attention from the nation-state towards the local and sub-regional level is needed.Aktuelle Analysen afrikanischer Gewaltkonflikte sind häufig voller Fehlinterpretationen (Mangel an Differenzierung, Genauigkeit und konzeptioneller Klarheit, Staatszentriertheit, fehlende mittelfristige Zielvorstellungen). Breitere Ansätze (z. B. das Modell der Strukturellen Stabilität) könnten die Grundlage für bessere Analyseraster und Politiken sein als eindimensionale Erklärungen. häufig differenzieren Erklärungsansätze nicht mit ausreichender Klarheit zwischen Ursachen, verschärfenden und auslösenden Faktoren. Insbesondere die richtige Einordnung konfliktverlängernder Faktoren ist in den jahrzehntelangen gewaltsamen Auseinandersetzungen in Afrika von zentraler Bedeutung. Das Diskussionspapier stellt die große Variationsbreite dominanter Erklärungsmuster der wichtigsten internationalen Geber und Akteure gegenüber und fordert einen Perspektivenwechsel zum Einbezug der lokalen und der subregionalen Ebene für die Erklärung und Bearbeitung gewaltsamer Konflikte

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

Single particle diffractive imaging data from Rice Dwarf Virus (RDV) were recorded using the Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS). RDV was chosen as it is a wellcharacterized model system, useful for proof-of-principle experiments, system optimization and algorithm development. RDV, an icosahedral virus of about 70 nm in diameter, was aerosolized and injected into the approximately 0.1 mu m diameter focused hard X-ray beam at the CXI instrument of LCLS. Diffraction patterns from RDV with signal to 5.9 angstrom ngstrom were recorded. The diffraction data are available through the Coherent X-ray Imaging Data Bank (CXIDB) as a resource for algorithm development, the contents of which are described here.11Ysciescopu