Aggregation of self-propelled colloidal rods near confining walls

Non-equilibrium collective behavior of self-propelled colloidal rods in a confining channel is studied using Brownian dynamics simulations and dynamical density functional theory. We observe an aggregation process in which rods self-organize into transiently jammed clusters at the channel walls. In the early stage of the process, fast-growing hedgehog-like clusters are formed which are largely immobile. At later stages, most of these clusters dissolve and mobilize into nematized aggregates sliding past the walls.Comment: 5 pages, 4 figure

The Use of Radar Imagery to Assess the Bottom Topography of Shallow Seas

Under favourable conditions features of the bottom topography of shallow seas are visible in radar images, which are nowadays obtained from satellites on a routine basis. A Bathymetry Assessment System (BAS) was developed to use these images in order to produce depth maps. This paper describes the principles behind the system, indicates for what type of applications it might be useful, notes on the accuracy and gives an example of an application

Nematic order of model goethite nanorods in a magnetic field

We explore the nematic order of model goethite nanorods in an external magnetic field within Onsager-Parsons density functional theory. The goethite rods are represented by monodisperse, charged spherocylinders with a permanent magnetic moment along the rod main axis, forcing the particles to align parallel to the magnetic field at low field strength. The intrinsic diamagnetic susceptibility anisometry of the rods is negative which leads to a preferred perpendicular orientation at higher field strength. It is shown that these counteracting effects may give rise to intricate phase behavior, including a pronounced stability of biaxial nematic order and the presence of reentrant phase transitions and demixing phenomena. The effect of the applied field on the nematic-to-smectic transition will also be addressed.Comment: 12 pages, 5 figures, submitted to Phys. Rev.

Mapping of sea bottom topography

Under suitable conditions the bottom topography of shallow seas is visible in remote sensing radar imagery. Two experiments were performed to establish which remote sensing technique or combination yields optimal imaging of bottom topography and which hydro-meteorological conditions are favorable. A further goal is to gain experience with these techniques. Two experiments were performed over an area in the North Sea near the measuring platform Meetpost Noordwijk (MPN). The bottom topography in the test area is dominated by sand waves. The crests of the sand waves are perpendicular to the coast line and the dominating (tidal-)current direction. A 4x4 sq km wide section of the test area was studied in more detail. The first experiment was undertaken on 16 Aug. 1989. During the experiment the following remote sensing instruments were used: Landsat-Thematic Mapper, and NASA/JPL Airborne Imaging Radar (AIR). The hydro-meteorological conditions; current, wind, wave, and air and water temperature were monitored by MPN, a ship of Rijkswaterstaat (the OCTANS), and a pitch-and-roll WAVEC-buoy. The second experiment took place on 12 July 1992. During this experiment data were collected with the NASA/JPL polarimetric synthetic aperture radar (SAR), and a five-band helicopter-borne scatterometer. Again the hydro-meteorological conditions were monitored at MPN and the OCTANS. Furthermore, interferometric radar data were collected

On the equation of state of a dense columnar liquid crystal

An accurate description of a columnar liquid crystal of hard disks at high packing fractions is presented using an improved free-volume theory. It is shown that the orientational entropy of the disks in the one-dimensional fluid direction leads to a different high-density scaling pressure compared to the prediction from traditional cell theory. Excellent quantitative agreement is found with recent Monte-Carlo simulation results for various thermodynamic and structural properties of the columnar state.Comment: 4 pages, 2 figures, to appear in Phys. Rev. Let

The maintenance gap: a new theoretical perspective on the evolution of aging

One of the prevailing theories of aging, the disposable soma theory, views aging as the result of the accumulation of damage through imperfect maintenance. Aging, then, is explained from an evolutionary perspective by asserting that this lack of maintenance exists because the required resources are better invested in reproduction. However, the amount of maintenance necessary to prevent aging, ‘maintenance requirement’ has so far been largely neglected and has certainly not been considered from an evolutionary perspective. To our knowledge we are the first to do so, and arrive at the conclusion that all maintenance requirement needs an evolutionary explanation. Increases in maintenance requirement can only be selected for if these are linked with either higher fecundity or better capabilities to cope with environmental challenges to the integrity of the organism. Several observations are suggestive of the latter kind of trade-off, the existence of which leads to the inevitable conclusion that the level of maintenance requirement is in principle unbound. Even the allocation of all available resources to maintenance could be unable to stop aging in some organisms. This has major implications for our understanding of the aging process on both the evolutionary and the mechanistic level. It means that the expected effect of measures to reallocate resources to maintenance from reproduction may be small in some species. We need to have an idea of how much maintenance is necessary in the first place. Our explorations of how natural selection is expected to act on the maintenance requirement provides the first step in understanding this

Production of a recombinant polyester-cleaving hydrolase from Thermobifida fusca in Escherichia coli

The hydrolase (Thermobifida fusca hydrolase; TfH) from T. fusca was produced in Escherichia coli as fusion protein using the OmpA leader sequence and a His(6) tag. Productivity could be raised more than 100-fold. Both batch and fed-batch cultivations yield comparable cell specific productivities whereas volumetric productivities differ largely. In the fed-batch cultivations final rTfH concentrations of 0.5 g L(−1) could be achieved. In batch cultivations the generated rTfH is translocated to the periplasm wherefrom it is completely released into the extracellular medium. In fed-batch runs most of the produced rTfH remains as soluble protein in the cytoplasm and only a fraction of about 35% is translocated to the periplasm. Migration of periplasmic proteins in the medium is obviously coupled with growth rate and this final transport step possibly plays an important role in product localization and efficacy of the Sec translocation process

Active Brownian Particles. From Individual to Collective Stochastic Dynamics

We review theoretical models of individual motility as well as collective dynamics and pattern formation of active particles. We focus on simple models of active dynamics with a particular emphasis on nonlinear and stochastic dynamics of such self-propelled entities in the framework of statistical mechanics. Examples of such active units in complex physico-chemical and biological systems are chemically powered nano-rods, localized patterns in reaction-diffusion system, motile cells or macroscopic animals. Based on the description of individual motion of point-like active particles by stochastic differential equations, we discuss different velocity-dependent friction functions, the impact of various types of fluctuations and calculate characteristic observables such as stationary velocity distributions or diffusion coefficients. Finally, we consider not only the free and confined individual active dynamics but also different types of interaction between active particles. The resulting collective dynamical behavior of large assemblies and aggregates of active units is discussed and an overview over some recent results on spatiotemporal pattern formation in such systems is given.Comment: 161 pages, Review, Eur Phys J Special-Topics, accepte