Birth of strange nonchaotic attractors in a piecewise linear oscillator

ACKNOWLEDGMENTS We sincerely thank the people who gave valuable comments. This paper was supported by the National Natural Science Foundation of China (NNSFC) (No. 12172306) and the Innovation Fund Project of Colleges and Universities in Gansu Province (No. 2021A-040).Peer reviewedPostprin

Symbolic dynamics for a kinds of piecewise smooth maps

Acknowledgments We sincerely thank the people who give valuable comments. The paper is supported by the National Natural Science Foundation of China (NNSFC) (Nos. 12362002 and 12172340), the Fundamental Research Funds for the Central Universities, China University of Geosciences (Wuhan) (Nos. G1323523061 and G1323523041), and the Young Top-notch Talent Cultivation Program of Hubei Province.Peer reviewe

Comprehensive single-cell analysis reveals novel anergic antigen-presenting cell subtypes in human sepsis

BackgroundSepsis is a life-threatening condition with high mortality. A few studies have emerged utilizing single-cell RNA sequencing (scRNA-seq) to analyze gene expression at the single-cell resolution in sepsis, but a comprehensive high-resolution analysis of blood antigen-presenting cells has not been conducted.MethodsAll published human scRNA-seq data were downloaded from the single cell portal database. After manually curating the dataset, we extracted all antigen-presenting cells, including dendritic cells (DCs) and monocytes, for identification of cell subpopulations and their gene profiling and intercellular interactions between septic patients and healthy controls. Finally, we further validated the findings by performing deconvolution analysis on bulk RNA sequencing (RNA-seq) data and flow cytometry.ResultsWithin the traditional DC populations, we discovered novel anergic DC subtypes characterized by low major histocompatibility complex class II expression. Notably, these anergic DC subtypes showed a significant increase in septic patients. Additionally, we found that a previously reported immunosuppressive monocyte subtype, Mono1, exhibited a similar gene expression profile to these anergic DCs. The consistency of our findings was confirmed through validation using bulk RNA-seq and flow cytometry, ensuring accurate identification of cell subtypes and gene expression patterns.ConclusionsThis study represents the first comprehensive single-cell analysis of antigen-presenting cells in human sepsis, revealing novel disease-associated anergic DC subtypes. These findings provide new insights into the cellular mechanisms of immune dysregulation in bacterial sepsis

S-Nitrosylation inhibits the kinase activity of tomato phosphoinositide-dependent kinase 1 (PDK1)

It is well known that the reactive oxygen species NO can trigger cell death in plants and other organisms, but the underlying molecular mechanisms are not well understood. Here we provide evidence that NO may trigger cell death in tomato (Solanum lycopersicum) by inhibiting the activity of phosphoinositide-dependent kinase 1 (SlPDK1), a conserved negative regulator of cell death in yeasts, mammals, and plants, via S-nitrosylation. Biotin-switch assays indicated that SlPDK1 is a target of S-nitrosylation. Moreover, the kinase activity of SlPDK1 was inhibited by S-nitrosoglutathione in a concentration-dependent manner, indicating that SlPDK1 activity is abrogated by S-nitrosylation. The S-nitrosoglutathione–induced inhibition was reversible in the presence of a reducing agent but additively enhanced by hydrogen peroxide (H2O2). Our LC-MS/MS analyses further indicated that SlPDK1 is primarily S-nitrosylated on a cysteine residue at position 128 (Cys128), and substitution of Cys128 with serine completely abolished SlPDK1 kinase activity, suggesting that S-nitrosylation of Cys128 is responsible for SlPDK1 inhibition. In summary, our results establish a potential link between NO-triggered cell death and inhibition of the kinase activity of tomato PDK1

Genetic analysis of chikungunya viruses imported to mainland China in 2008

<p>Abstract</p> <p>Background</p> <p>Chikungunya virus (CHIKV) has caused large outbreaks worldwide in recent years, especially on the islands of the Indian Ocean and India. The virus is transmitted by mosquitoes (<it>Aedes aegypti</it>), which are widespread in China, with an especially high population density in southern China. Analyses of full-length viral sequences revealed the acquisition of a single adaptive mutation providing a selective advantage for the transmission of CHIKV by this species. No outbreaks due to the local transmission of CHIKV have been reported in China, and no cases of importation were detected on mainland China before 2008. We followed the spread of imported CHIKV in southern China and analyzed the genetic character of the detected viruses to evaluate their potential for evolution.</p> <p>Results</p> <p>The importation of CHIKV to mainland China was first detected in 2008. The genomic sequences of four of the imported viruses were identified, and phylogenetic analysis demonstrated that the sequences were clustered in the Indian Ocean group; however, seven amino acid changes were detected in the nonstructural protein-coding region, and five amino acid changes were noted in the structural protein-coding regions. In particular, a novel substitution in E2 was detected (K252Q), which may impact the neurovirulence of CHIKV. The adaptive mutation A226V in E1 was observed in two imported cases of chikungunya disease.</p> <p>Conclusions</p> <p>Laboratory-confirmed CHIKV infections among travelers visiting China in 2008 were presented, new mutations in the viral nucleic acids and proteins may represent adaptive mutations for human or mosquito hosts.</p

An improved method for calculating slope length (λ) and the LS parameters of the Revised Universal Soil Loss Equation for large watersheds

The Universal Soil Loss Equation (USLE) and its revised version (RUSLE) are often used to estimate soil erosion at regional landscape scales. USLE/RUSLE contain parameters for slope length factor (L) and slope steepness factor (S), usually combined as LS. However a major limitation is the difficulty in extracting the LS factor. Methods to estimate LS based on geographic information systems have been developed in the last two decades. L can be calculated for large watersheds using the unit contributing area (UCA) or the slope length (λ) as input parameters. Due to the absence of an estimation of slope length, the UCA method is insufficiently accurate. Improvement of the spatial accuracy of slope length and LS factor is still necessary for estimating soil erosion. The purpose of this study was to develop an improved method to estimate the slope length and LS factor. We combined the algorithm for multiple-flow direction (MFD) used in the UCA method with the LS-TOOL (LS-TOOLSFD) algorithms, taking into account the calculation errors and cutoff conditions for distance, to obtain slope length (λ) and the LS factor. The new method, LS-TOOLMFD, was applied and validated in a catchment with complexly variable slopes. The slope length and LS calculated by LS-TOOLMFD both agreed better with field data than with the calculations using the LS-TOOLSFD and UCA methods, respectively. We then integrated the LS-TOOLMFD algorithm into LS-TOOL developed in Microsoft's.NET environment using C# with a user-friendly interface. The method can automatically calculate slope length, slope steepness, L, S, and LS factor, providing the results as ASCII files that can be easily used in GIS software and erosion models. This study is an important step forward in conducting accurate large-scale erosion evaluation

An 18.9-minute Blue Large-Amplitude Pulsator Crossing the 'Hertzsprung Gap' of Hot Subdwarfs

Blue large-amplitude pulsators (BLAPs) represent a new and rare class of hot pulsating stars with unusually large amplitudes and short periods. Up to now, only 24 confirmed BLAPs have been identified from more than one billion monitored stars, including a group with pulsation period longer than $\sim 20$ min (classical BLAPs, hereafter) and the other group with pulsation period below $\sim 8$ min. The evolutionary path that could give rise to such kinds of stellar configurations is unclear. Here we report on a comprehensive study of the peculiar BLAP discovered by the Tsinghua University - Ma Huateng Telescopes for Survey (TMTS), TMTS J035143.63+584504.2 (TMTS-BLAP-1). This new BLAP has an 18.9 min pulsation period and is similar to the BLAPs with a low surface gravity and an extended helium-enriched envelope, suggesting that it is a low-gravity BLAP at the shortest-period end. In particular, the long-term monitoring data reveal that this pulsating star has an unusually large rate of period change, P_dot/P=2.2e-6/yr. Such a significant and positive value challenges its origins from both helium-core pre-white-dwarfs and core helium-burning subdwarfs, but is consistent with that derived from shell helium-burning subdwarfs. The particular pulsation period and unusual rate of period change indicate that TMTS-BLAP-1 is at a short-lived (~10^6 yr) phase of shell-helium ignition before the stable shell-helium burning; in other words, TMTS-BLAP-1 is going through a "Hertzsprung gap" of hot subdwarfs.Comment: 26 pages, 12 figures, 4 tables, published on Nature Astronomy, URL: https://www.nature.com/articles/s41550-022-01783-

Dietary Modulation of Gut Microbiota Contributes to Alleviation of Both Genetic and Simple Obesity in Children

Gut microbiota has been implicated as a pivotal contributing factor in diet-related obesity; however, its role in development of disease phenotypes in human genetic obesity such as Prader–Willi syndrome (PWS) remains elusive. In this hospitalized intervention trial with PWS (n = 17) and simple obesity (n = 21) children, a diet rich in non-digestible carbohydrates induced significant weight loss and concomitant structural changes of the gut microbiota together with reduction of serum antigen load and alleviation of inflammation. Co-abundance network analysis of 161 prevalent bacterial draft genomes assembled directly from metagenomic datasets showed relative increase of functional genome groups for acetate production from carbohydrates fermentation. NMR-based metabolomic profiling of urine showed diet-induced overall changes of host metabotypes and identified significantly reduced trimethylamine N-oxide and indoxyl sulfate, host-bacteria co-metabolites known to induce metabolic deteriorations. Specific bacterial genomes that were correlated with urine levels of these detrimental co-metabolites were found to encode enzyme genes for production of their precursors by fermentation of choline or tryptophan in the gut. When transplanted into germ-free mice, the pre-intervention gut microbiota induced higher inflammation and larger adipocytes compared with the post-intervention microbiota from the same volunteer. Our multi-omics-based systems analysis indicates a significant etiological contribution of dysbiotic gut microbiota to both genetic and simple obesity in children, implicating a potentially effective target for alleviation